Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007036

Physical Location & Seq

Genomic Coordinates Reverse (-)

542133 .. 545812

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G006400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGTTGATGGAAAGTTCTTCACTTTGGCTCAAGTCTCTGAGCACAACACCCCCAAGGACTGTTGGCTGATCATCAATGGCAAGGTTTATGACGTGACCAAGTTTTTGGAGGACCATCCAGGTGGTGATGATGTTTTGTTGTCTGCAACAGGGAAGGATGCAACTGATGATTTTGAGGACGTGGGTCATAGTGATAATGCCAGAGACATGTTGAAGGACATGTACGTCGGAGACATCGATGCCTCTACTATCCCCAGCAGTACCACATATACTCCTCCGAAGCAGCCTCATTACAATCAGGACAAGACTTCTGAATTTATCGTCAAACTTCTGCAGTTCCTTGTTCCCATTGCAATCTTGGGTTTGGCTTTTGGCATCCGCCTTTACACCAAGTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

135

Amino Acids

14.83

Weight (kDa)

4.73

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32720 AT2G32720
fragaria_vesca	FvH4_4g00670
malus_domestica	MD00G1019100.v1.1 MD04G1006200.v1.1
prunus_persica	Prupe.1G006400_v2.0.a1 Prupe.1G006400_v2.0.a1
pyrus_communis	pycom04g00560 pycom13g29590
rosa_chinensis	RchiOBHm_Chr4g0386041
rosa_laevigata	RLG00000010178
rosa_multiflora	Rmu_co8034552.1_g000001 Rmu_sc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_5G00333800
rosa_rugosa	Rorug03G0306500
rosa_samantha	Rh4AG010300 Rh4BG007400 Rh4CG011000 Rh4DG008500 Rh6CG052200 Rh6CG052300 Rh6CG053200 Rh6DG049200 Rh6DG050600
rosa_wichuraiana	Rw4G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	2 cut(s)	227, 265
AflIII	ACRYGT	2 cut(s)	210, 222
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	2 cut(s)	97, 184
AjnI	CCWGG	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	43, 201, 228
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	317
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	5, 126
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	43, 201, 228
BfmI	CTRYAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	2 cut(s)	97, 184
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	151, 232, 387
BoxI	GACNNNNGTC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	18
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	118, 166, 378
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	48
BsmAI	GTCTC	3 cut(s)	43, 201, 228
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	118, 166, 378
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	3 cut(s)	43, 201, 228
BstMBI	GATC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	2 cut(s)	214, 226
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	298
BstXI	CCANNNNNNTGG	2 cut(s)	109, 125
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtrI	CACGTC	2 cut(s)	97, 184
BtsCI	GGATG	3 cut(s)	118, 166, 378
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	226, 264
CviAII	CATG	2 cut(s)	211, 223
CviJI	RGCY	4 cut(s)	32, 70, 289, 371
CviKI_1	RGCY	4 cut(s)	32, 70, 289, 371
CviQI	GTAC	2 cut(s)	226, 264
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	214, 226
FaiI	YATR	6 cut(s)	93, 192, 212, 224, 271, 273
FatI	CATG	2 cut(s)	210, 222
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	3 cut(s)	105, 173, 365
Fsp4HI	GCNGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	287
GsaI	CCCAGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	214, 226
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	43, 233, 282, 316
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	151, 211
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	3 cut(s)	96, 183, 228
HpyCH4V	TGCA	4 cut(s)	149, 164, 337, 356
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	3 cut(s)	96, 183, 228
Hsp92II	CATG	2 cut(s)	214, 226
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	72
LpnPI	CCDG	6 cut(s)	108, 135, 138, 217, 271, 287
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	151, 232, 387
MaeII	ACGT	3 cut(s)	96, 183, 228
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	106, 172, 256, 288, 300
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	214, 226
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	2 cut(s)	214, 226
PciI	ACATGT	2 cut(s)	210, 222
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	288
PscI	ACATGT	2 cut(s)	210, 222
PshAI	GACNNNNGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	227, 265
RsaNI	GTAC	2 cut(s)	226, 264
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	90, 99, 127, 186, 231
SfaNI	GCATC	3 cut(s)	151, 232, 387
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	3 cut(s)	99, 186, 231
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	2 cut(s)	214, 226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.