Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007036

Physical Location & Seq

Genomic Coordinates Forward (+)

5347524 .. 5347928

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGGCGATGGAAAGGTCTTCACTTTGGCTCAGGTCTCCGACCACAACACCGAGAAAGACTGCTGGCTAATCATCAATGGCAAGGTTTATGATGTGACCAAGTTCTTGGAGGAGCATCCTGGTGCTGATGATATTTTGTTGTCAGCAACAGGGAAGGATGCAACTGATGATTTCGAAGACGTGGGTCACAGTGATAGAGCCAGAGACATATTGAAGGACCTTTACGTGGGAGAGATCGATGCCTCTACTATCCCCAAGAAGACCACATGCACTCCTCCCAAGCAGCCTCAGTACAATCAAGACAAGACATCAGATTTCATCATCAAACTTCCCCAGTTCCTTGTTCCCATTGCCGCATTGGGTTTGGCTTTTGGCATCCGCCTTTACACCAAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

134

Amino Acids

14.76

Weight (kDa)

4.91

Isoelectric Point (pI)

23.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	9 - 80	9e-29	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32720 AT2G32720
fragaria_vesca	FvH4_4g00670
malus_domestica	MD00G1019100.v1.1 MD04G1006200.v1.1
prunus_persica	Prupe.1G006400_v2.0.a1 Prupe.1G006400_v2.0.a1
pyrus_communis	pycom04g00560 pycom13g29590
rosa_chinensis	RchiOBHm_Chr4g0386041
rosa_laevigata	RLG00000010178
rosa_multiflora	Rmu_co8034552.1_g000001 Rmu_sc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_5G00333800
rosa_rugosa	Rorug03G0306500
rosa_samantha	Rh4AG010300 Rh4BG007400 Rh4CG011000 Rh4DG008500 Rh6CG052200 Rh6CG052300 Rh6CG053200 Rh6DG049200 Rh6DG050600
rosa_wichuraiana	Rw4G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	357, 382
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	43, 201
ApeKI	GCWGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbsI	GAAGAC	3 cut(s)	13, 186, 269
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	43, 201
BisI	GCNGC	2 cut(s)	287, 357
BlsI	GCNGC	2 cut(s)	288, 358
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	4 cut(s)	127, 151, 232, 387
BmuI	ACTGGG	1 cut(s)	331
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	3 cut(s)	13, 186, 269
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	3 cut(s)	118, 166, 378
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	47, 305
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	128, 267
BseXI	GCAGC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	43, 201
Bso31I	GGTCTC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	357, 382
BspCNI	CTCAG	2 cut(s)	46, 304
BspDI	ATCGAT	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	33, 291
BstF5I	GGATG	3 cut(s)	118, 166, 378
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	43, 201
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	3 cut(s)	13, 186, 269
BstXI	CCANNNNNNTGG	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	118, 166, 378
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	5 cut(s)	32, 70, 203, 289, 371
CviKI_1	RGCY	5 cut(s)	32, 70, 203, 289, 371
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	33, 291
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	273
FaiI	YATR	3 cut(s)	93, 212, 271
FatI	CATG	1 cut(s)	269
Fnu4HI	GCNGC	2 cut(s)	287, 357
FokI	GGATG	3 cut(s)	105, 173, 365
Fsp4HI	GCNGC	2 cut(s)	287, 357
GluI	GCNGC	2 cut(s)	287, 357
Hin1II	CATG	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	43, 316
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	151, 211
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	183, 228
HpyCH4V	TGCA	2 cut(s)	164, 273
HpyF3I	CTNAG	2 cut(s)	33, 291
HpySE526I	ACGT	2 cut(s)	183, 228
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	20, 52, 108, 135, 138, 217, 350
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	4 cut(s)	127, 151, 232, 387
MaeII	ACGT	2 cut(s)	183, 228
MaeIII	GTNAC	2 cut(s)	97, 188
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	13, 191, 274
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	106, 256, 288, 300
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	97, 188
NspI	RCATGY	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	288, 358
Ppu21I	YACGTR	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	2 cut(s)	287, 357
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	6 cut(s)	21, 39, 90, 186, 225, 231
SfaNI	GCATC	4 cut(s)	127, 151, 232, 387
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	123
SsiI	CCGC	2 cut(s)	357, 382
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	186, 231
TaqI	TCGA	2 cut(s)	177, 240
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	97, 188
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	97, 188
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.