Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8034552.1

Orthogroup ID

OG0007036

Physical Location & Seq

Genomic Coordinates Reverse (-)

293 .. 549

Gene Structure 257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8034552.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 257 bp

attcagggaaggatgcaactgatgatttcgaagacgtgggtcacagtgataatgccagagacatgttgaaggacttctatgtgggagagatcgatgcctctactatccccaagaagaccacatacactcctcccaagcagcctcagtacaatcaagacaagacttcagagttcatcatcaaacttctccagttccttgttcccattgccatattgggtttggcttttggcatccgcctttacgccaagtcctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

84

Amino Acids

9.38

Weight (kDa)

5.17

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32720 AT2G32720
fragaria_vesca	FvH4_4g00670
malus_domestica	MD00G1019100.v1.1 MD04G1006200.v1.1
prunus_persica	Prupe.1G006400_v2.0.a1 Prupe.1G006400_v2.0.a1
pyrus_communis	pycom04g00560 pycom13g29590
rosa_chinensis	RchiOBHm_Chr4g0386041
rosa_laevigata	RLG00000010178
rosa_multiflora	Rmu_co8034552.1_g000001 Rmu_sc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_5G00333800
rosa_rugosa	Rorug03G0306500
rosa_samantha	Rh4AG010300 Rh4BG007400 Rh4CG011000 Rh4DG008500 Rh6CG052200 Rh6CG052300 Rh6CG053200 Rh6DG049200 Rh6DG050600
rosa_wichuraiana	Rw4G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	2 cut(s)	38, 121
BbvI	GCAGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	36
BmsI	GCATC	3 cut(s)	3, 84, 239
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	2 cut(s)	38, 121
BpmI	CTGGAG	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	92
BseGI	GGATG	2 cut(s)	18, 230
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	18, 230
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	66
BstPAI	GACNNNNGTC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	2 cut(s)	38, 121
Bsu15I	ATCGAT	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	18, 230
BtsIMutI	CAGTG	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	2 cut(s)	141, 223
CviKI_1	RGCY	2 cut(s)	141, 223
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	149
FaeI	CATG	1 cut(s)	66
FaiI	YATR	4 cut(s)	64, 80, 123, 211
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	2 cut(s)	25, 217
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	172
Hin1II	CATG	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	3, 63
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	2 cut(s)	69, 202
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	3 cut(s)	3, 84, 239
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	43, 126
MnlI	CCTC	3 cut(s)	108, 140, 152
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	1 cut(s)	255
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	29
PciI	ACATGT	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	62
PshAI	GACNNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	89
SetI	ASST	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	3, 84, 239
SfuI	TTCGAA	1 cut(s)	29
SsiI	CCGC	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	29, 92
TatI	WGTACW	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	51
XceI	RCATGY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 216
XmnI	GAANNNNTTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.