Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

32508773 .. 32511762

Gene Structure 2990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0306500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGAAGGCACTCACCAAGTCTAGTCTTAAGAGTACTAGTCCTTCACACTCTGCTGTGAGTTCATGGAGCTCAAATTCTGGAGGAATGCCAAGAGATGAACTCAAAGAACGGGCATATGACAAAGACTACTACTATAAGGCTTCTTATCAGAGCAAGTCTCCTACAAGAGAAAGTACCAAGCCTCAAGAAGTTAAACTTCACACTCAACAAAGGGCAACCAAACGGGCAATGTTCAACTACATGGTTGCAGCAAAGCTGAGTATCTTGGAGCAGCGGAGAAAGCAAGAAGAGATGTTGCATAAGATGATAGAAGAGGAAGAGATTCGCTTACTGAGAAAGGAGATGATTCCAAGGGCTCAACTCATGCCGTTTTTCGATAGACCTTTTATTCCTCAAAGATCAAGCAGGCCTTTGACAATTCCTAAAGAACCAAGCTGCTTCCGCATGATGAGCAGCAAGGGCTTCACTGCTTGTAGATCTGGTACCCCAATCTACAGTTTCCAACACACTACTCAAGCCCCCATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0003838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006275 GO:0006629 GO:0006694 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008156 GO:0008168 GO:0008169 GO:0008202 GO:0008610 GO:0008757 GO:0009058 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010051 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0012505 GO:0016049 GO:0016125 GO:0016126 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0032875 GO:0032876 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00100 ko01110 map00100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Sterol_MT_C

Protein Analysis

177

Amino Acids

20.58

Weight (kDa)

9.93

Isoelectric Point (pI)

78.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	66 - 140	2.7e-22	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	485
AciI	CCGC	2 cut(s)	277, 445
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	3 cut(s)	37, 178, 487
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	3 cut(s)	72, 259, 438
AluI	AGCT	3 cut(s)	72, 259, 438
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	251, 274, 438, 456
ApoI	RAATTY	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	74, 361
BarI	GAAGNNNNNNTAC	2 cut(s)	28, 60
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	263, 286, 425, 468
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	2 cut(s)	24, 39
BfmI	CTRYAG	1 cut(s)	496
BfrI	CTTAAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	479
BisI	GCNGC	4 cut(s)	252, 275, 439, 457
BlsI	GCNGC	4 cut(s)	253, 276, 440, 458
BmcAI	AGTACT	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	487
BplI	GAGNNNNNCTC	4 cut(s)	87, 119, 145, 177
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	171, 501
BsaJI	CCNNGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	251, 326
BseXI	GCAGC	4 cut(s)	263, 286, 425, 468
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	2 cut(s)	74, 361
Bsp143I	GATC	2 cut(s)	401, 479
BspACI	CCGC	2 cut(s)	277, 445
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	252, 327
BspLI	GGNNCC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	485
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	401, 479
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	3 cut(s)	285, 309, 315
BstAFI	CTTAAG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	260, 335
BstKTI	GATC	2 cut(s)	404, 482
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	401, 479
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 444, 453, 462
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	263, 286, 425, 468
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	36, 177, 486
CviAII	CATG	4 cut(s)	66, 244, 367, 448
CviJI	RGCY	9 cut(s)	72, 143, 184, 259, 359, 412, 438, 465, 521
CviKI_1	RGCY	9 cut(s)	72, 143, 184, 259, 359, 412, 438, 465, 521
CviQI	GTAC	3 cut(s)	36, 177, 486
DdeI	CTNAG	2 cut(s)	260, 335
DpnI	GATC	2 cut(s)	403, 481
DpnII	GATC	2 cut(s)	401, 479
Eam1104I	CTCTTC	3 cut(s)	285, 309, 315
EarI	CTCTTC	3 cut(s)	285, 309, 315
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	2 cut(s)	74, 361
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	74, 361
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	69, 247, 370, 451
FaiI	YATR	8 cut(s)	67, 118, 120, 138, 245, 303, 368, 449
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 397, 429
FatI	CATG	4 cut(s)	65, 243, 366, 447
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	252, 275, 439, 457
FriOI	GRGCYC	2 cut(s)	74, 361
Fsp4HI	GCNGC	4 cut(s)	252, 275, 439, 457
FspBI	CTAG	2 cut(s)	24, 39
GluI	GCNGC	4 cut(s)	252, 275, 439, 457
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	412
Hin1II	CATG	4 cut(s)	69, 247, 370, 451
HinfI	GANTC	2 cut(s)	325, 349
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	81, 188
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	2 cut(s)	251, 301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 444, 453, 462
HpyF3I	CTNAG	2 cut(s)	260, 335
Hsp92II	CATG	4 cut(s)	69, 247, 370, 451
KpnI	GGTACC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	401, 479
LmnI	GCTCC	2 cut(s)	69, 271
LpnPI	CCDG	3 cut(s)	66, 394, 468
Lsp1109I	GCAGC	4 cut(s)	263, 286, 425, 468
MaeI	CTAG	2 cut(s)	24, 39
MalI	GATC	2 cut(s)	403, 481
MboI	GATC	2 cut(s)	401, 479
MboII	GAAGA	3 cut(s)	302, 326, 332
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	2 cut(s)	74, 361
MluCI	AATT	2 cut(s)	76, 420
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	4 cut(s)	77, 195, 310, 405
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	2 cut(s)	30, 195
MspA1I	CMGCKG	1 cut(s)	277
MspCI	CTTAAG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	283, 444, 453, 462
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	401, 479
NlaIII	CATG	4 cut(s)	69, 247, 370, 451
NlaIV	GGNNCC	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	412
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	325, 349
PkrI	GCNGC	4 cut(s)	253, 276, 440, 458
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	3 cut(s)	37, 178, 487
RsaNI	GTAC	3 cut(s)	36, 177, 486
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	30, 195
SatI	GCNGC	4 cut(s)	252, 275, 439, 457
Sau3AI	GATC	2 cut(s)	401, 479
ScaI	AGTACT	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	74, 361
SetI	ASST	4 cut(s)	74, 261, 388, 440
SfcI	CTRYAG	1 cut(s)	496
SmlI	CTYRAG	3 cut(s)	29, 186, 516
SmoI	CTYRAG	3 cut(s)	29, 186, 516
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	2 cut(s)	76, 420
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	277, 445
SspMI	CTAG	2 cut(s)	24, 39
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	500
TaqI	TCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	76, 420
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	325, 349
Tru1I	TTAA	2 cut(s)	30, 195
Tru9I	TTAA	2 cut(s)	30, 195
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	4 cut(s)	251, 274, 438, 456
TspDTI	ATGAA	2 cut(s)	54, 114
TspRI	CASTG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	24, 39
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.