Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

19792270 .. 19794480

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGAAATACATGAAGAAATCAAAGATAACTGGCGATATCAGCGTCATGGAAGTCTCTAAAGCAACAGCTCCAAGTCCAGGTGTTCGAACCAGAGCCGCTAAAACCCTAGCCTTGAAGCGGCTTAATTCCTCCGCCGCTGATTCAGCTCTACCTAACGACTCTTCTTGCTATCTTCAGCTCCGTAGCCGCCGTCTCGAGAAACCCTCTTCGCTGATTGAACCGAAACAGCCGCCGAGAGTTCACAGATCGGGAATTAAAGAGTCTGGTTCCAGGTCTCGCGTTGACTCGGTTAACTCGGTTCCTGTAGCTCAGAGCTCTAATGAAGATGAATGTTTTGACAATTTCGTGAGTGTCCAAGTTTCTTGTGGTGAAAACAGTCTCGGTTTTGAATCAAGACACAGCACAAGGGAGAGCACGCCTTGTAACTTTGTTGAGGATATGGAGATCATGGTTACACCAGGGTCTAGCACGAGGTCGATGTGCAGAGCAACCAAAGAGTACACAAGGGAACAAGATAACGTGATCCCGACCACTAGTGAAATGGAGGAGTTCTTTGCATATGCAGAGCAGCAGCAACAGAGGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGATATCCCCCTCAGCGGACGTTACGAATGGGTGCAAGTCAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0004857 GO:0004860 GO:0004861 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006469 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010556 GO:0010557 GO:0010563 GO:0010564 GO:0010604 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031490 GO:0032268 GO:0032269 GO:0032875 GO:0032877 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045740 GO:0045786 GO:0045787 GO:0045859 GO:0045935 GO:0045936 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0090068 GO:0090329 GO:0097159 GO:0098772 GO:1901363 GO:1904029 GO:1904030 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

7.6

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	176 - 220	7e-19	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	282
AciI	CCGC	7 cut(s)	99, 121, 135, 138, 190, 233, 636
AclWI	GGATC	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	503, 602
AfiI	CCNNNNNNNGG	3 cut(s)	80, 120, 635
AgsI	TTSAA	3 cut(s)	118, 221, 392
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	3 cut(s)	79, 272, 460
AluBI	AGCT	5 cut(s)	71, 149, 181, 311, 318
AluI	AGCT	5 cut(s)	71, 149, 181, 311, 318
Alw21I	GWGCWC	2 cut(s)	320, 419
Alw26I	GTCTC	4 cut(s)	61, 200, 282, 386
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	571, 574
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	320, 419
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	583, 586
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	3 cut(s)	81, 274, 462
BcoDI	GTCTC	4 cut(s)	61, 200, 282, 386
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	3 cut(s)	110, 468, 537
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	7 cut(s)	99, 122, 138, 190, 233, 572, 575
BlsI	GCNGC	7 cut(s)	100, 123, 139, 191, 234, 573, 576
Bme1390I	CCNGG	3 cut(s)	81, 274, 462
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	271, 303
BmrFI	CCNGG	3 cut(s)	81, 274, 462
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 120, 635
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	3 cut(s)	81, 274, 462
BseDI	CCNNGG	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	80, 120, 635
BseMII	CTCAG	2 cut(s)	326, 646
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	583, 586
BsgI	GTGCAG	1 cut(s)	505
Bsh1236I	CGCG	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	320, 419
BsiHKCI	CYCGRG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	80, 120, 635
BsmAI	GTCTC	4 cut(s)	61, 200, 282, 386
BsmBI	CGTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	320, 419
Bsp143I	GATC	3 cut(s)	248, 447, 525
BspACI	CCGC	7 cut(s)	99, 121, 135, 138, 190, 233, 636
BspCNI	CTCAG	2 cut(s)	325, 645
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	271, 303
BspPI	GGATC	1 cut(s)	520
BspT104I	TTCGAA	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	248, 447, 525
BssSI	CACGAG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	472
Bst2UI	CCWGG	3 cut(s)	81, 274, 462
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	169, 214
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	312, 632
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	251, 450, 528
BstMAI	GTCTC	4 cut(s)	61, 200, 282, 386
BstMBI	GATC	3 cut(s)	248, 447, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 146, 583
BstNI	CCWGG	3 cut(s)	81, 274, 462
BstSCI	CCNGG	3 cut(s)	79, 272, 460
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	583, 586
Cac8I	GCNNGC	1 cut(s)	419
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	502, 601
CviAII	CATG	5 cut(s)	13, 49, 451, 592, 666
CviQI	GTAC	2 cut(s)	502, 601
DdeI	CTNAG	2 cut(s)	312, 632
DpnI	GATC	3 cut(s)	250, 449, 527
DpnII	GATC	3 cut(s)	248, 447, 525
Eam1104I	CTCTTC	2 cut(s)	169, 214
EarI	CTCTTC	2 cut(s)	169, 214
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	282
Eco32I	GATATC	2 cut(s)	40, 625
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	318
EcoRII	CCWGG	3 cut(s)	79, 272, 460
EcoRV	GATATC	2 cut(s)	40, 625
EcoT38I	GRGCYC	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	5 cut(s)	16, 52, 454, 595, 669
FaiI	YATR	8 cut(s)	14, 50, 443, 452, 562, 564, 593, 667
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	5 cut(s)	12, 48, 450, 591, 665
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	7 cut(s)	99, 122, 138, 190, 233, 572, 575
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	7 cut(s)	99, 122, 138, 190, 233, 572, 575
FspBI	CTAG	3 cut(s)	110, 468, 537
GluI	GCNGC	7 cut(s)	99, 122, 138, 190, 233, 572, 575
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	5 cut(s)	16, 52, 454, 595, 669
HincII	GTYRAC	2 cut(s)	286, 295
HindII	GTYRAC	2 cut(s)	286, 295
HinfI	GANTC	5 cut(s)	143, 161, 263, 287, 392
HpaI	GTTAAC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	4 cut(s)	244, 286, 295, 504
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	6 cut(s)	197, 199, 252, 349, 396, 529
Hpy8I	GTNNAC	4 cut(s)	244, 286, 295, 504
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	2 cut(s)	522, 640
HpyCH4V	TGCA	4 cut(s)	486, 560, 566, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 146, 583
HpyF3I	CTNAG	2 cut(s)	312, 632
HpySE526I	ACGT	2 cut(s)	522, 640
Hsp92II	CATG	5 cut(s)	16, 52, 454, 595, 669
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	248, 447, 525
LmnI	GCTCC	2 cut(s)	76, 186
Lsp1109I	GCAGC	2 cut(s)	583, 586
MaeI	CTAG	3 cut(s)	110, 468, 537
MaeII	ACGT	2 cut(s)	522, 640
MaeIII	GTNAC	3 cut(s)	425, 454, 641
MalI	GATC	3 cut(s)	250, 449, 527
MboI	GATC	3 cut(s)	248, 447, 525
MboII	GAAGA	5 cut(s)	28, 156, 167, 201, 338
MhlI	GDGCHC	2 cut(s)	320, 419
MluCI	AATT	3 cut(s)	127, 255, 343
MlyI	GAGTC	3 cut(s)	155, 272, 281
MnlI	CCTC	7 cut(s)	142, 217, 430, 468, 541, 576, 641
MseI	TTAA	3 cut(s)	126, 258, 294
MspA1I	CMGCKG	2 cut(s)	140, 636
MspR9I	CCNGG	3 cut(s)	81, 274, 462
MvaI	CCWGG	3 cut(s)	81, 274, 462
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	42, 146, 583
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	3 cut(s)	248, 447, 525
NlaIII	CATG	5 cut(s)	16, 52, 454, 595, 669
NlaIV	GGNNCC	2 cut(s)	271, 303
NmeAIII	GCCGAG	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	143, 392
PkrI	GCNGC	7 cut(s)	100, 123, 139, 191, 234, 573, 576
PleI	GAGTC	3 cut(s)	155, 271, 281
PpsI	GAGTC	3 cut(s)	155, 271, 281
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	79, 272, 460
PspGI	CCWGG	3 cut(s)	79, 272, 460
PspN4I	GGNNCC	2 cut(s)	271, 303
RsaI	GTAC	2 cut(s)	503, 602
RsaNI	GTAC	2 cut(s)	502, 601
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	126, 258, 294
SatI	GCNGC	7 cut(s)	99, 122, 138, 190, 233, 572, 575
Sau3AI	GATC	3 cut(s)	248, 447, 525
SchI	GAGTC	3 cut(s)	155, 272, 281
ScrFI	CCNGG	3 cut(s)	81, 274, 462
SduI	GDGCHC	2 cut(s)	320, 419
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	197
SfuI	TTCGAA	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	3 cut(s)	127, 255, 343
SsiI	CCGC	7 cut(s)	99, 121, 135, 138, 190, 233, 636
SspMI	CTAG	3 cut(s)	110, 468, 537
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	79, 272, 460
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	2 cut(s)	525, 643
TaqI	TCGA	4 cut(s)	88, 198, 479, 609
TasI	AATT	3 cut(s)	127, 255, 343
TatI	WGTACW	2 cut(s)	501, 600
TauI	GCSGC	5 cut(s)	101, 124, 140, 192, 235
TfiI	GAWTC	2 cut(s)	143, 392
Tru1I	TTAA	3 cut(s)	126, 258, 294
Tru9I	TTAA	3 cut(s)	126, 258, 294
TseI	GCWGC	2 cut(s)	571, 574
TspDTI	ATGAA	4 cut(s)	29, 339, 345, 580
TspGWI	ACGGA	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	2 cut(s)	365, 541
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	3 cut(s)	110, 468, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.