Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

250644 .. 253713

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGCAAGTACATGAGGAAGTCGAAAGCCACCGGTGACGTGGCAGTGATGGAAGTCTCGCAGGCCGCCTCTCTCGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGCGCTCCACCACCTCCTCCGCCTCCTATCTCCAGCTCCGCAGCCGCCGCCTCCAGAAGCACCCGCCGATTCTCCCGCCTCGAGAGCCCCGCAGGCAGAAGCACCACCACCACCACCACCACACTCCCAAACAGCCAACGCCGGAAAACCCTAACCCGCCCGCCGACGAGGGATCGCCGGAAAAGGAGGAGGCGCCGGAAGAGGGGCAAAATAATAATGGCGAAAATGGTGATTTCGGTGATGCTGAAGAAGCTTCGTTTGGAGAGAATGTGCCCGAGTTTGAAGGTAGAGAGAGAACCACAAGGGAATCTACACCTTGCAGCTTGATAAGGGATCCAGACACCATCAGAACCCCTGGTTCTACTACTAGGCCTACTAATTCAGCTGATGCTAACCGGAGAATACAGAACTCATCACAGAGACACATACCAACAGCACATGACATGGATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAGAAGCAATTCATTGACAAATACAACTATGACCCTGTGAATGATAAGCCGCTACCAGGACGTTATGAATGGGAGAAATTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

6.22

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	177 - 223	2.4e-19	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AclWI	GGATC	4 cut(s)	289, 437, 450, 665
AcuI	CTGAAG	2 cut(s)	375, 597
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	75, 311, 644
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	392
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	463, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	5 cut(s)	104, 145, 362, 432, 494
AluI	AGCT	5 cut(s)	104, 145, 362, 432, 494
Alw26I	GTCTC	2 cut(s)	61, 523
AlwI	GGATC	4 cut(s)	289, 437, 450, 665
Ama87I	CYCGRG	4 cut(s)	74, 87, 189, 383
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	63, 479
ApeKI	GCWGC	3 cut(s)	150, 429, 586
AsiGI	ACCGGT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	114, 304
AsuHPI	GGTGA	3 cut(s)	47, 350, 359
AvaI	CYCGRG	4 cut(s)	74, 87, 189, 383
BaeGI	GKGCMC	1 cut(s)	384
BamHI	GGATCC	2 cut(s)	442, 670
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	162, 441, 598
BccI	CCATC	2 cut(s)	43, 461
BciT130I	CCWGG	2 cut(s)	465, 645
BcoDI	GTCTC	2 cut(s)	61, 523
BfaI	CTAG	2 cut(s)	101, 477
BfoI	RGCGCY	2 cut(s)	115, 305
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	7 cut(s)	66, 151, 154, 157, 430, 587, 638
BlsI	GCNGC	7 cut(s)	67, 152, 155, 158, 431, 588, 639
Bme1390I	CCNGG	2 cut(s)	465, 645
BmeT110I	CYCGRG	4 cut(s)	74, 87, 189, 383
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	303, 444, 672
BmrFI	CCNGG	2 cut(s)	465, 645
BmsI	GCATC	2 cut(s)	340, 487
BpmI	CTGGAG	3 cut(s)	92, 125, 146
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	2 cut(s)	32, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 311, 644
Bse118I	RCCGGY	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	465, 645
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	3 cut(s)	75, 311, 644
BseRI	GAGGAG	2 cut(s)	115, 311
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	162, 441, 598
BshFI	GGCC	2 cut(s)	65, 481
BshNI	GGYRCC	1 cut(s)	301
BshTI	ACCGGT	1 cut(s)	32
BsiHKCI	CYCGRG	4 cut(s)	74, 87, 189, 383
BsiSI	CCGG	5 cut(s)	33, 251, 287, 305, 505
BslI	CCNNNNNNNGG	3 cut(s)	75, 311, 644
BsmAI	GTCTC	2 cut(s)	61, 523
BsnI	GGCC	2 cut(s)	65, 481
BsoBI	CYCGRG	4 cut(s)	74, 87, 189, 383
Bsp1286I	GDGCHC	2 cut(s)	198, 384
Bsp143I	GATC	3 cut(s)	281, 442, 670
BspANI	GGCC	2 cut(s)	65, 481
BspLI	GGNNCC	3 cut(s)	303, 444, 672
BspPI	GGATC	4 cut(s)	289, 437, 450, 665
BspQI	GCTCTTC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	3 cut(s)	281, 442, 670
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	465, 645
Bst6I	CTCTTC	2 cut(s)	303, 576
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	63, 203, 270
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	2 cut(s)	115, 305
BstHHI	GCGC	2 cut(s)	114, 304
BstKTI	GATC	3 cut(s)	284, 445, 673
BstMAI	GTCTC	2 cut(s)	61, 523
BstMBI	GATC	3 cut(s)	281, 442, 670
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 359, 592
BstNI	CCWGG	2 cut(s)	465, 645
BstSCI	CCNGG	2 cut(s)	463, 643
BstSLI	GKGCMC	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	162, 441, 598
BstX2I	RGATCY	2 cut(s)	442, 670
BstYI	RGATCY	2 cut(s)	442, 670
BsuRI	GGCC	2 cut(s)	65, 481
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	63, 203, 270
CfoI	GCGC	2 cut(s)	114, 304
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	3 cut(s)	13, 548, 553
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	675
DinI	GGCGCC	1 cut(s)	303
DpnI	GATC	3 cut(s)	283, 444, 672
DpnII	GATC	3 cut(s)	281, 442, 670
Eam1104I	CTCTTC	2 cut(s)	303, 576
EarI	CTCTTC	2 cut(s)	303, 576
EciI	GGCGGA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	375, 597
Eco88I	CYCGRG	4 cut(s)	74, 87, 189, 383
EcoRII	CCWGG	2 cut(s)	463, 643
EcoT38I	GRGCYC	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	303
EheI	GGCGCC	1 cut(s)	303
FaeI	CATG	3 cut(s)	16, 551, 556
FaiI	YATR	6 cut(s)	14, 536, 549, 554, 618, 654
FatI	CATG	3 cut(s)	12, 547, 552
FauI	CCCGC	5 cut(s)	180, 192, 206, 273, 277
Fnu4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 430, 587, 638
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 430, 587, 638
FspBI	CTAG	2 cut(s)	101, 477
GlaI	GCGC	2 cut(s)	113, 303
GluI	GCNGC	7 cut(s)	66, 151, 154, 157, 430, 587, 638
GsuI	CTGGAG	3 cut(s)	92, 125, 146
HaeII	RGCGCY	2 cut(s)	115, 305
HaeIII	GGCC	2 cut(s)	65, 481
HapII	CCGG	5 cut(s)	33, 251, 287, 305, 505
HhaI	GCGC	2 cut(s)	114, 304
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	16, 551, 556
Hin6I	GCGC	2 cut(s)	112, 302
HinP1I	GCGC	2 cut(s)	112, 302
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	178, 416
HpaII	CCGG	5 cut(s)	33, 251, 287, 305, 505
HphI	GGTGA	3 cut(s)	47, 350, 359
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	3 cut(s)	163, 191, 446
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	39, 649
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 359, 592
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	2 cut(s)	39, 649
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	16, 551, 556
HspAI	GCGC	2 cut(s)	112, 302
KasI	GGCGCC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	281, 442, 670
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	2 cut(s)	119, 150
Lsp1109I	GCAGC	3 cut(s)	162, 441, 598
LweI	GCATC	2 cut(s)	340, 487
MaeI	CTAG	2 cut(s)	101, 477
MaeII	ACGT	2 cut(s)	39, 649
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	283, 444, 672
MboI	GATC	3 cut(s)	281, 442, 670
MboII	GAAGA	4 cut(s)	320, 368, 590, 593
MflI	RGATCY	2 cut(s)	442, 670
MhlI	GDGCHC	2 cut(s)	198, 384
MluCI	AATT	3 cut(s)	487, 596, 665
Mly113I	GGCGCC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	5 cut(s)	33, 251, 287, 305, 505
MspR9I	CCNGG	2 cut(s)	465, 645
MvaI	CCWGG	2 cut(s)	465, 645
MwoI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 359, 592
NarI	GGCGCC	1 cut(s)	302
NdeII	GATC	3 cut(s)	281, 442, 670
NlaIII	CATG	3 cut(s)	16, 551, 556
NlaIV	GGNNCC	3 cut(s)	303, 444, 672
NmuCI	GTSAC	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	178, 416
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	67, 152, 155, 158, 431, 588, 639
PluTI	GGCGCC	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	463, 643
PspGI	CCWGG	2 cut(s)	463, 643
PspN4I	GGNNCC	3 cut(s)	303, 444, 672
PsuI	RGATCY	2 cut(s)	442, 670
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	576
SatI	GCNGC	7 cut(s)	66, 151, 154, 157, 430, 587, 638
Sau3AI	GATC	3 cut(s)	281, 442, 670
ScrFI	CCNGG	2 cut(s)	465, 645
SduI	GDGCHC	2 cut(s)	198, 384
SfaNI	GCATC	2 cut(s)	340, 487
SfoI	GGCGCC	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	189
SgrAI	CRCCGGYG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	487, 596, 665
SseBI	AGGCCT	1 cut(s)	481
SspDI	GGCGCC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	101, 477
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	2 cut(s)	463, 643
TaiI	ACGT	2 cut(s)	42, 652
TaqI	TCGA	2 cut(s)	23, 190
TasI	AATT	3 cut(s)	487, 596, 665
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	4 cut(s)	68, 156, 159, 640
TfiI	GAWTC	2 cut(s)	178, 416
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	150, 429, 586
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	589, 669
TspRI	CASTG	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	101, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.