Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000472.1

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

87458 .. 88020

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000472.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggcaagtacatgaggaagtcgaaagccaccggtgacgtggcagtgatggaagtctcgcaggccgcctctctcggggttcgcacccgagccaaaaccctagctctccagcgctccaccacctcctccgcctcctatctccagctccgcagccgccgcctccagaagcacccgccgattctcccgcctcgagagccccgcaggcagaagcaccaccaccaccaccaccacactcccaaacagccaacgccggaaaaccctaacccgcccgccgacgagggctcgccggaaaaggaggaggcgccggaagaggggcaaaataataatggcgaaaatggtgatttcggtgatgctgaagaagcttcgtttggagagaatgtgcccgagtttgaagaaatgaaggaaattggaaaaactgggtttttcagtgttctggtcaagttggaatttttttgttcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

6.71

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	75, 311
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	392, 459
AjiI	CACGTC	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	3 cut(s)	104, 145, 362
AluI	AGCT	3 cut(s)	104, 145, 362
Alw26I	GTCTC	1 cut(s)	61
Ama87I	CYCGRG	4 cut(s)	74, 87, 189, 383
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	114, 304
AsuHPI	GGTGA	3 cut(s)	47, 350, 359
AvaI	CYCGRG	4 cut(s)	74, 87, 189, 383
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	198, 284
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	2 cut(s)	115, 305
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	66, 151, 154, 157
BlsI	GCNGC	4 cut(s)	67, 152, 155, 158
BmeT110I	CYCGRG	4 cut(s)	74, 87, 189, 383
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	3 cut(s)	92, 125, 146
BsaHI	GRCGYC	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 311
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	75, 311
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	115, 311
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	301
BshTI	ACCGGT	1 cut(s)	32
BsiHKCI	CYCGRG	4 cut(s)	74, 87, 189, 383
BsiSI	CCGG	4 cut(s)	33, 251, 287, 305
BslI	CCNNNNNNNGG	2 cut(s)	75, 311
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	4 cut(s)	74, 87, 189, 383
Bsp1286I	GDGCHC	3 cut(s)	198, 284, 384
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	63, 203, 270, 284
BstH2I	RGCGCY	2 cut(s)	115, 305
BstHHI	GCGC	2 cut(s)	114, 304
BstMAI	GTCTC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 193, 202, 359
BstSLI	GKGCMC	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 433
Cac8I	GCNNGC	4 cut(s)	63, 203, 270, 284
CfoI	GCGC	2 cut(s)	114, 304
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	1 cut(s)	10
DinI	GGCGCC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	198, 284
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	4 cut(s)	74, 87, 189, 383
EcoT38I	GRGCYC	2 cut(s)	198, 284
EgeI	GGCGCC	1 cut(s)	303
EheI	GGCGCC	1 cut(s)	303
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
FauI	CCCGC	5 cut(s)	180, 192, 206, 273, 277
Fnu4HI	GCNGC	4 cut(s)	66, 151, 154, 157
FriOI	GRGCYC	2 cut(s)	198, 284
Fsp4HI	GCNGC	4 cut(s)	66, 151, 154, 157
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	2 cut(s)	113, 303
GluI	GCNGC	4 cut(s)	66, 151, 154, 157
GsuI	CTGGAG	3 cut(s)	92, 125, 146
HaeII	RGCGCY	2 cut(s)	115, 305
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	4 cut(s)	33, 251, 287, 305
HhaI	GCGC	2 cut(s)	114, 304
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	2 cut(s)	112, 302
HinP1I	GCGC	2 cut(s)	112, 302
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	4 cut(s)	33, 251, 287, 305
HphI	GGTGA	3 cut(s)	47, 350, 359
Hpy188III	TCNNGA	2 cut(s)	163, 191
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 193, 202, 359
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	112, 302
KasI	GGCGCC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	119, 150
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	320, 368, 404
MhlI	GDGCHC	3 cut(s)	198, 284, 384
MluCI	AATT	3 cut(s)	405, 446, 459
Mly113I	GGCGCC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	423
MseI	TTAA	1 cut(s)	463
MspI	CCGG	4 cut(s)	33, 251, 287, 305
MwoI	GCNNNNNNNGC	4 cut(s)	156, 193, 202, 359
NarI	GGCGCC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	67, 152, 155, 158
PluTI	GGCGCC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	303
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	4 cut(s)	66, 151, 154, 157
SduI	GDGCHC	3 cut(s)	198, 284, 384
SetI	ASST	5 cut(s)	42, 106, 125, 147, 364
SfaNI	GCATC	1 cut(s)	340
SfoI	GGCGCC	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	189
SgrAI	CRCCGGYG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	405, 446, 459
SspDI	GGCGCC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	23, 190
TasI	AATT	3 cut(s)	405, 446, 459
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	3 cut(s)	68, 156, 159
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	2 cut(s)	51, 433
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	51, 433
XapI	RAATTY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	189
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.