Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

1356334 .. 1360340

Gene Structure 4007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGCAAGTACATGAGGAAGTCGAAAGCCACTGGTGACGTGGCAGTGATGGAAGTCTCGCAGGCCGCCTCTCTCGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGCGCTCCACCACCTCCTCCGCCTCCTATCTCCAGCTCCGCAGCCGCCGCCTCCAGAAGCACCCGCCGATTCTCCCGCCTCGAGAGCCCCGCAGGCAGAAGCACCACCACCACCACACTCCCAAACAGCCAACGCCGGAAAACCCTAACCCACCCGCCGCCGAGGGCTCGCCGGAAAAGGAGGAGTCGCCGGAAGAGGAACAGAATAATAATGGCGAAAATGGTGATTTTGGTGATGCTGAAGAAGCTTCGTTCGGAGAGAATGTGCTCGAGTTTGAAGGTAGAGAGAGAACCACAAGGGAATCTACACCTTGCAGCTTGATAAGGGATCCAGACACCATCAGAACCCCTGGTTCTACTACTAGGCCTACTAATTCAGCTGATGCTAACCGGAGAATACAGAACTCATCACAGAGACACATACCAACAGCACATGACATGGATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAGAAGCAATTCATTGACAAGTTACTATTACTCTTTTACTACTTCTTTAAACTGCTGAAGTTTGGCAGTTTGAATTTGAATTTCCTTGCATATTATCCAAAAACAAGCTTGGTTTTGTTCTCTCACCATTCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

7.91

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	431, 444
AcsI	RAATTY	2 cut(s)	655, 661
AcuI	CTGAAG	3 cut(s)	369, 591, 659
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	386, 655, 661
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	6 cut(s)	104, 145, 356, 426, 488, 690
AluI	AGCT	6 cut(s)	104, 145, 356, 426, 488, 690
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	61, 517
AlwI	GGATC	2 cut(s)	431, 444
Ama87I	CYCGRG	4 cut(s)	74, 87, 189, 377
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	63, 473
ApeKI	GCWGC	3 cut(s)	150, 423, 580
ApoI	RAATTY	2 cut(s)	655, 661
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	4 cut(s)	47, 344, 353, 698
AvaI	CYCGRG	4 cut(s)	74, 87, 189, 377
BamHI	GGATCC	1 cut(s)	436
BanII	GRGCYC	2 cut(s)	198, 278
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	162, 435, 592
BccI	CCATC	2 cut(s)	43, 455
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	61, 517
BfaI	CTAG	2 cut(s)	101, 471
BfoI	RGCGCY	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	7 cut(s)	66, 151, 154, 157, 267, 424, 581
BlsI	GCNGC	7 cut(s)	67, 152, 155, 158, 268, 425, 582
Bme1390I	CCNGG	1 cut(s)	459
BmeT110I	CYCGRG	4 cut(s)	74, 87, 189, 377
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	334, 481
BpmI	CTGGAG	3 cut(s)	92, 125, 146
BsaJI	CCNNGG	2 cut(s)	270, 457
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	270, 457
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	115, 305
BseXI	GCAGC	3 cut(s)	162, 435, 592
BshFI	GGCC	2 cut(s)	65, 475
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	4 cut(s)	74, 87, 189, 377
BsiSI	CCGG	4 cut(s)	245, 281, 299, 499
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	61, 517
BsnI	GGCC	2 cut(s)	65, 475
BsoBI	CYCGRG	4 cut(s)	74, 87, 189, 377
Bsp1286I	GDGCHC	3 cut(s)	198, 278, 378
Bsp143I	GATC	2 cut(s)	436, 714
BspANI	GGCC	2 cut(s)	65, 475
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	431, 444
BspQI	GCTCTTC	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	270, 457
BssMI	GATC	2 cut(s)	436, 714
Bst2UI	CCWGG	1 cut(s)	459
Bst6I	CTCTTC	2 cut(s)	297, 570
BstC8I	GCNNGC	3 cut(s)	63, 203, 278
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	439, 717
BstMAI	GTCTC	2 cut(s)	61, 517
BstMBI	GATC	2 cut(s)	436, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 353, 586
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	162, 435, 592
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	65, 475
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	30, 51
Cac8I	GCNNGC	3 cut(s)	63, 203, 278
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	13, 542, 547
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	438, 716
DpnII	GATC	2 cut(s)	436, 714
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	297, 570
EarI	CTCTTC	2 cut(s)	297, 570
EciI	GGCGGA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	475
Eco24I	GRGCYC	2 cut(s)	198, 278
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	3 cut(s)	369, 591, 659
Eco88I	CYCGRG	4 cut(s)	74, 87, 189, 377
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	2 cut(s)	198, 278
FaeI	CATG	3 cut(s)	16, 545, 550
FaiI	YATR	5 cut(s)	14, 530, 543, 548, 673
FatI	CATG	3 cut(s)	12, 541, 546
FauI	CCCGC	4 cut(s)	180, 192, 206, 271
Fnu4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 267, 424, 581
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	2 cut(s)	198, 278
Fsp4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 267, 424, 581
FspBI	CTAG	2 cut(s)	101, 471
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	7 cut(s)	66, 151, 154, 157, 267, 424, 581
GsuI	CTGGAG	3 cut(s)	92, 125, 146
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	65, 475
HapII	CCGG	4 cut(s)	245, 281, 299, 499
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	16, 545, 550
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	2 cut(s)	354, 688
HinfI	GANTC	3 cut(s)	178, 293, 410
HpaII	CCGG	4 cut(s)	245, 281, 299, 499
HphI	GGTGA	4 cut(s)	47, 344, 353, 698
Hpy188I	TCNGA	2 cut(s)	365, 452
Hpy188III	TCNNGA	3 cut(s)	163, 191, 440
HpyAV	CCTTC	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	423, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 353, 586
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	16, 545, 550
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	436, 714
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	119, 150
Lsp1109I	GCAGC	3 cut(s)	162, 435, 592
LweI	GCATC	2 cut(s)	334, 481
MaeI	CTAG	2 cut(s)	101, 471
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	35, 603
MalI	GATC	2 cut(s)	438, 716
MboI	GATC	2 cut(s)	436, 714
MboII	GAAGA	4 cut(s)	314, 362, 584, 587
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	198, 278, 378
MluCI	AATT	4 cut(s)	481, 590, 655, 661
MlyI	GAGTC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	4 cut(s)	245, 281, 299, 499
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 353, 586
NdeII	GATC	2 cut(s)	436, 714
NlaIII	CATG	3 cut(s)	16, 545, 550
NlaIV	GGNNCC	1 cut(s)	438
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	35
PaeR7I	CTCGAG	2 cut(s)	189, 377
PceI	AGGCCT	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	178, 410
PkrI	GCNGC	7 cut(s)	67, 152, 155, 158, 268, 425, 582
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	438
PspXI	VCTCGAGB	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	7 cut(s)	66, 151, 154, 157, 267, 424, 581
Sau3AI	GATC	2 cut(s)	436, 714
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	3 cut(s)	198, 278, 378
SfaNI	GCATC	2 cut(s)	334, 481
Sfr274I	CTCGAG	2 cut(s)	189, 377
SlaI	CTCGAG	2 cut(s)	189, 377
SmlI	CTYRAG	2 cut(s)	189, 377
SmoI	CTYRAG	2 cut(s)	189, 377
Sse9I	AATT	4 cut(s)	481, 590, 655, 661
SseBI	AGGCCT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	101, 471
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	457
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	23, 190, 378, 713
TasI	AATT	4 cut(s)	481, 590, 655, 661
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	4 cut(s)	68, 156, 159, 269
TfiI	GAWTC	2 cut(s)	178, 410
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	2 cut(s)	37, 51
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	150, 423, 580
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	583
TspRI	CASTG	2 cut(s)	37, 51
XapI	RAATTY	2 cut(s)	655, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	2 cut(s)	189, 377
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	2 cut(s)	101, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.