Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

50270574 .. 50273833

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG280900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAAAATACATGAAGAAATCCAAGATCACGGGCGACATCGCCGTCATGGAGGTTTCAATTTCACCTCAGTCCTCCCTCGGTGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAGAAGCTCCACCAGCAGCAGCAGCAATCGCCGGACTCCGATTCCTCGTCTCTGTACTATCTCCAGCTCCGAAGCCGCCGCCTTGAGAAGCCGCCGCTGCGAAGCGACGCCAACAAGCAGGCTCAGGCTCAGGGTCCTCGGGATTGCTGCGCGGGGGGCAGGGCCGTCAATTCGAGGTTGAGTGTGGGCTCGTCGGCGGATTTGGGCTGGGATGAGAGGAACGAGAAGGACGGGGAGGGGTGTTTTGGTAATGTTGAAAGTGAAGCAGAGTATGCCGACGATGTTGAGGCTTCATTTGGGGAAAACAACTTGGATTTTGATGGCAGAGATAGTACTGACAGCAATAGCTCCTGCACTTCATTTGTGTTAGCAATCATGTATCGTTTTCACGGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

5.44

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	266
AciI	CCGC	6 cut(s)	190, 193, 206, 209, 266, 311
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	170, 448
AgsI	TTSAA	2 cut(s)	60, 371
AluBI	AGCT	3 cut(s)	121, 181, 462
AluI	AGCT	3 cut(s)	121, 181, 462
Alw26I	GTCTC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	276, 507
ApeKI	GCWGC	5 cut(s)	130, 133, 136, 211, 261
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	248, 276, 507
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	5 cut(s)	142, 145, 148, 198, 248
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	2 cut(s)	29, 263
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	107, 511
BisI	GCNGC	9 cut(s)	131, 134, 137, 190, 193, 206, 209, 212, 262
BlsI	GCNGC	9 cut(s)	132, 135, 138, 191, 194, 207, 210, 213, 263
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	3 cut(s)	248, 276, 507
BmiI	GGNNCC	2 cut(s)	249, 508
BpmI	CTGGAG	2 cut(s)	98, 161
Bpu10I	CCTNAGC	2 cut(s)	237, 243
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	79, 251
BseDI	CCNNGG	2 cut(s)	79, 251
BseGI	GGATG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	83, 251, 257
BseXI	GCAGC	5 cut(s)	142, 145, 148, 198, 248
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	278, 509
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	278, 509
BsoBI	CYCGRG	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	6 cut(s)	190, 193, 206, 209, 266, 311
BspANI	GGCC	2 cut(s)	278, 509
BspCNI	CTCAG	3 cut(s)	82, 250, 256
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	249, 508
BspT104I	TTCGAA	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	79, 251
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	69, 237, 243
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 136, 142, 211, 270, 386
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	5 cut(s)	142, 145, 148, 198, 248
BsuRI	GGCC	2 cut(s)	278, 509
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	248, 276, 507
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	169, 447
CviAII	CATG	3 cut(s)	13, 49, 490
CviQI	GTAC	2 cut(s)	169, 447
DdeI	CTNAG	3 cut(s)	69, 237, 243
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	2 cut(s)	248, 507
EcoT38I	GRGCYC	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	16, 52, 493
FaiI	YATR	4 cut(s)	14, 50, 387, 491
FatI	CATG	3 cut(s)	12, 48, 489
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	9 cut(s)	131, 134, 137, 190, 193, 206, 209, 212, 262
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	9 cut(s)	131, 134, 137, 190, 193, 206, 209, 212, 262
FspBI	CTAG	2 cut(s)	107, 511
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	9 cut(s)	131, 134, 137, 190, 193, 206, 209, 212, 262
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	2 cut(s)	98, 161
HaeIII	GGCC	2 cut(s)	278, 509
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	16, 52, 493
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	149, 155
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	154, 185
Hpy188III	TCNNGA	2 cut(s)	115, 254
Hpy99I	CGWCG	3 cut(s)	224, 310, 395
HpyAV	CCTTC	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 136, 142, 211, 270, 386
HpyF3I	CTNAG	3 cut(s)	69, 237, 243
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	16, 52, 493
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	126, 186, 467
Lsp1109I	GCAGC	5 cut(s)	142, 145, 148, 198, 248
MaeI	CTAG	2 cut(s)	107, 511
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	60, 283
MlyI	GAGTC	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	6 cut(s)	127, 136, 142, 211, 270, 386
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	16, 52, 493
NlaIV	GGNNCC	2 cut(s)	249, 508
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	9 cut(s)	132, 135, 138, 191, 194, 207, 210, 213, 263
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	249, 508
PspPI	GGNCC	3 cut(s)	248, 276, 507
PspPPI	RGGWCCY	1 cut(s)	248
RsaI	GTAC	2 cut(s)	170, 448
RsaNI	GTAC	2 cut(s)	169, 447
SatI	GCNGC	9 cut(s)	131, 134, 137, 190, 193, 206, 209, 212, 262
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	248, 276, 507
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	6 cut(s)	57, 70, 123, 183, 293, 464
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	60, 283
SsiI	CCGC	6 cut(s)	190, 193, 206, 209, 266, 311
SspMI	CTAG	2 cut(s)	107, 511
TaqI	TCGA	2 cut(s)	88, 287
TasI	AATT	2 cut(s)	60, 283
TatI	WGTACW	2 cut(s)	168, 446
TauI	GCSGC	4 cut(s)	192, 195, 208, 211
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	130, 133, 136, 211, 261
TspDTI	ATGAA	3 cut(s)	29, 396, 462
VpaK11BI	GGWCC	1 cut(s)	248
XspI	CTAG	2 cut(s)	107, 511
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.