Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

25548502 .. 25550595

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1164900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGAAATACATGAAGAAATCGAAAATTTTCGGCGACGTAGCCGTGATGGAGGTCTCCATTTCGCCGCAGTCCTCTCTCGGAGTTCGGACCAGAGCCAAAACCCTAGCCCTCCAAAAGCTCCAGCAGCAGCAGCAGCAGAAGCAAGAGAATCAAGATCAATCCCCCTCCGGAGAATCGGACTCAGATAGCTCCTCCCTGTACTACCTCCAGCTCAGGAGCCGCCGTCTAGAGAAACCCCCGTTGCGAAACGACGCCGTCAAGAAGCAGAGCCAGAGCGGCGGAATTAATGAGCCCTCGGAGAAGCCCGGAGGAGGCTGCTGCGGGGAAAGCCGACGGGGGCCGGTGGAATCGAGGCCCAAATCAAGGCTGAGCGTGGGCTCGTCGGTGGAGTTGGACTGGGCTGGACCCGTTGAGAGGAAGGAGAAGGAAGGGGAGGAGGGTGTTTTGGTAATTTCGGAAGTGGAGCAGAGTATGGTAACGATTTGGGGGTCGAGGCTTCGTTTGGGGAAAACAACTTGGATTTTGAAGCCAGAGACAGAAACCACGCCGTGCAGCTTCATAAGGGAGTCGGACACAATTGGAACCCCCGGTTCCACCACAAGGCGGACGAGTTCTATTTCAACTCACCGGAGAGTTAGAAACAATGTGCAAAGAAATATCCCAACCACGCTTGAGATGGAGGAGTTCTTTGCCCGACATGAGGAGGAGCAACAGAAAATCTTCATTGAGAAAGGTTCTGATACCATAGTATCTCAGTTGTTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

257

Amino Acids

28.63

Weight (kDa)

9.09

Isoelectric Point (pI)

76.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	6 cut(s)	68, 223, 279, 282, 324, 607
AcsI	RAATTY	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	552
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	314, 366, 417, 603, 606, 703
AgsI	TTSAA	2 cut(s)	529, 624
AluBI	AGCT	4 cut(s)	121, 192, 214, 558
AluI	AGCT	4 cut(s)	121, 192, 214, 558
Alw26I	GTCTC	2 cut(s)	61, 530
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	2 cut(s)	341, 356
ApeKI	GCWGC	7 cut(s)	127, 130, 133, 136, 318, 321, 555
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	2 cut(s)	29, 722
AspS9I	GGNCC	4 cut(s)	90, 341, 357, 407
AsuC2I	CCSGG	2 cut(s)	309, 591
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	90, 407
BaeI	ACNNNNGTAYC	4 cut(s)	735, 735, 768, 768
BanII	GRGCYC	2 cut(s)	297, 383
BbvI	GCAGC	7 cut(s)	139, 142, 145, 148, 305, 308, 567
BccI	CCATC	2 cut(s)	43, 673
BceAI	ACGGC	4 cut(s)	29, 210, 242, 535
BcnI	CCSGG	2 cut(s)	309, 591
BcoDI	GTCTC	2 cut(s)	61, 530
BfaI	CTAG	2 cut(s)	107, 230
BglI	GCCNNNNNGGC	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	309, 591
Bme18I	GGWCC	2 cut(s)	90, 407
BmgT120I	GGNCC	4 cut(s)	90, 341, 357, 407
BmiI	GGNNCC	5 cut(s)	221, 342, 409, 586, 595
BmrFI	CCNGG	2 cut(s)	309, 591
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpmI	CTGGAG	2 cut(s)	107, 194
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	2 cut(s)	309, 591
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	297, 589
BsaWI	WCCGGW	2 cut(s)	170, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	6 cut(s)	314, 366, 417, 603, 606, 703
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	297, 589
BseLI	CCNNNNNNNGG	6 cut(s)	314, 366, 417, 603, 606, 703
BseMII	CTCAG	4 cut(s)	198, 229, 362, 770
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	6 cut(s)	184, 327, 452, 698, 719, 722
BseXI	GCAGC	7 cut(s)	139, 142, 145, 148, 305, 308, 567
BsgI	GTGCAG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	343, 358
BsiSI	CCGG	5 cut(s)	171, 309, 344, 591, 631
BslI	CCNNNNNNNGG	6 cut(s)	314, 366, 417, 603, 606, 703
BsmAI	GTCTC	2 cut(s)	61, 530
BsnI	GGCC	2 cut(s)	343, 358
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	297, 383
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	6 cut(s)	68, 223, 279, 282, 324, 607
BspANI	GGCC	2 cut(s)	343, 358
BspCNI	CTCAG	4 cut(s)	197, 228, 363, 769
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	5 cut(s)	221, 342, 409, 586, 595
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	297, 589
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	184, 215, 371, 756
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	61, 530
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 133, 136, 142, 279, 330
BstSCI	CCNGG	2 cut(s)	307, 589
BstV1I	GCAGC	7 cut(s)	139, 142, 145, 148, 305, 308, 567
BsuRI	GGCC	2 cut(s)	343, 358
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	4 cut(s)	90, 341, 357, 407
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	13, 701
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	4 cut(s)	184, 215, 371, 756
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	552
EciI	GGCGGA	2 cut(s)	297, 622
Eco24I	GRGCYC	2 cut(s)	297, 383
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	90, 407
EcoT38I	GRGCYC	2 cut(s)	297, 383
FaeI	CATG	2 cut(s)	16, 704
FaiI	YATR	5 cut(s)	14, 476, 563, 702, 749
FatI	CATG	2 cut(s)	12, 700
FauI	CCCGC	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	297, 383
FspBI	CTAG	2 cut(s)	107, 230
GsuI	CTGGAG	2 cut(s)	107, 194
HaeIII	GGCC	2 cut(s)	343, 358
HapII	CCGG	5 cut(s)	171, 309, 344, 591, 631
HgaI	GACGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	16, 704
HinfI	GANTC	5 cut(s)	151, 176, 182, 350, 569
HpaII	CCGG	5 cut(s)	171, 309, 344, 591, 631
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	8 cut(s)	83, 90, 181, 187, 301, 460, 574, 742
Hpy188III	TCNNGA	6 cut(s)	155, 171, 217, 230, 262, 768
Hpy99I	CGWCG	4 cut(s)	41, 257, 339, 388
HpyAV	CCTTC	3 cut(s)	415, 421, 425
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	555, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 133, 136, 142, 279, 330
HpyF3I	CTNAG	4 cut(s)	184, 215, 371, 756
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	16, 704
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	5 cut(s)	126, 197, 219, 466, 709
Lsp1109I	GCAGC	7 cut(s)	139, 142, 145, 148, 305, 308, 567
MaeI	CTAG	2 cut(s)	107, 230
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	28, 715
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	297, 383
MluCI	AATT	4 cut(s)	27, 285, 453, 579
MlyI	GAGTC	2 cut(s)	176, 578
MmeI	TCCRAC	2 cut(s)	375, 552
MroI	TCCGGA	1 cut(s)	170
MroXI	GAANNNNTTC	2 cut(s)	29, 722
MseI	TTAA	1 cut(s)	288
MspI	CCGG	5 cut(s)	171, 309, 344, 591, 631
MspR9I	CCNGG	2 cut(s)	309, 591
MunI	CAATTG	1 cut(s)	579
MwoI	GCNNNNNNNGC	6 cut(s)	127, 133, 136, 142, 279, 330
NciI	CCSGG	2 cut(s)	309, 591
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	16, 704
NlaIV	GGNNCC	5 cut(s)	221, 342, 409, 586, 595
PdmI	GAANNNNTTC	2 cut(s)	29, 722
PfeI	GAWTC	3 cut(s)	151, 176, 350
PflFI	GACNNNGTC	1 cut(s)	257
PleI	GAGTC	2 cut(s)	176, 577
PpsI	GAGTC	2 cut(s)	176, 577
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	5 cut(s)	221, 342, 409, 586, 595
PspPI	GGNCC	4 cut(s)	90, 341, 357, 407
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	4 cut(s)	90, 341, 357, 407
SchI	GAGTC	2 cut(s)	176, 578
ScrFI	CCNGG	2 cut(s)	309, 591
SduI	GDGCHC	2 cut(s)	297, 383
SetI	ASST	8 cut(s)	42, 57, 123, 194, 210, 216, 560, 739
SinI	GGWCC	2 cut(s)	90, 407
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	4 cut(s)	27, 285, 453, 579
SsiI	CCGC	6 cut(s)	68, 223, 279, 282, 324, 607
SspMI	CTAG	2 cut(s)	107, 230
StyD4I	CCNGG	2 cut(s)	307, 589
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	23, 353, 494
TasI	AATT	4 cut(s)	27, 285, 453, 579
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	70, 225, 282
TfiI	GAWTC	3 cut(s)	151, 176, 350
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	7 cut(s)	127, 130, 133, 136, 318, 321, 555
TspDTI	ATGAA	3 cut(s)	29, 550, 715
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	90, 407
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XmnI	GAANNNNTTC	2 cut(s)	29, 722
XspI	CTAG	2 cut(s)	107, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.