Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

535017 .. 538780

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G006300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGCAAGTACATGAGGAAGTCCAAGTCCGCAGGGGAAATGGCAGTCATGGAGGTTTCACACCCACACCCACACCCACAGTCACAAGCCTCTCTCGGAGTTTGCACCCGAGCCAAAACCCTAGCTCTCCAGAGGTCATCGGCTTCACCTGTCACCTCCGGCTCCTATCTCCAGCTCCGGAGCCGCCGCCTCGAGAAGCCTCCGATTCTCCTGCCCAAACGGCTCGAGCCCAAGAGGCAGAAACCCAAGGCTAGTTCTAATTCTAGGGCGACTTCGAGGCTTGGAGTCCATGGTTCGGTGGCCAAGGCTCAGGGCCAGAAGGCTGAGGAGGCTGACGAAATGGCGCCGAAAGAGAAAGAGGGTCAAGAAAAGAATGAGCACAATAACACCAACAACAAAGAAAATGGCGATTTGGGTGTCGAAGAAGCTTCCTTTGGAGAGAATGTGCTCGAGCTTGAAGGTAGAGAGAGGACCACAAGGGAGTCAACGCCTTGTAGCTTGATAAGGGATCCAGACACCATCAGAACCCCCAGTTCTACTACCAAGCCTACTAATTCAGCTGAAGCAAATCAGAGAATACAGAGCTCATCGCAGAGGCACATACCAACAGCACATGATATGGATGAGTTCTTCGCTGGTGCTGAAGGAGAGCAGCAAAGACAATTCATTGCGAAATACAACTTTGACCCTGTGAATGATAAACCGCTCCCGGGACGTTATGAATGGGAGAAAGTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

248

Amino Acids

27.46

Weight (kDa)

8.98

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	706
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	4 cut(s)	30, 184, 187, 704
AclWI	GGATC	3 cut(s)	503, 516, 731
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	582, 663
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	295, 710
AgsI	TTSAA	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	7 cut(s)	125, 175, 428, 454, 498, 560, 585
AluI	AGCT	7 cut(s)	125, 175, 428, 454, 498, 560, 585
Alw21I	GWGCWC	3 cut(s)	381, 450, 587
AlwI	GGATC	3 cut(s)	503, 516, 731
Ama87I	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	2 cut(s)	300, 313
ApeKI	GCWGC	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	313, 471
AsuC2I	CCSGG	2 cut(s)	710, 711
AsuHPI	GGTGA	2 cut(s)	138, 145
AvaI	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
AvaII	GGWCC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	302
BamHI	GGATCC	2 cut(s)	508, 736
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	231, 587
Bbv12I	GWGCWC	3 cut(s)	381, 450, 587
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BcnI	CCSGG	2 cut(s)	710, 711
BfaI	CTAG	3 cut(s)	122, 252, 264
BfoI	RGCGCY	1 cut(s)	347
BglI	GCCNNNNNGGC	2 cut(s)	220, 235
BisI	GCNGC	3 cut(s)	184, 187, 653
BlsI	GCNGC	3 cut(s)	185, 188, 654
Bme1390I	CCNGG	2 cut(s)	710, 711
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
BmgT120I	GGNCC	2 cut(s)	313, 471
BmiI	GGNNCC	5 cut(s)	163, 182, 345, 510, 738
BmrFI	CCNGG	2 cut(s)	710, 711
BmrI	ACTGGG	1 cut(s)	525
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	2 cut(s)	113, 155
Bpu10I	CCTNAGC	2 cut(s)	309, 324
BpuMI	CCSGG	2 cut(s)	710, 711
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	4 cut(s)	246, 289, 303, 709
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 710
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	246, 289, 303, 709
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	2 cut(s)	295, 710
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	315, 323
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	664
BshFI	GGCC	2 cut(s)	302, 315
BshNI	GGYRCC	1 cut(s)	343
BsiHKAI	GWGCWC	3 cut(s)	381, 450, 587
BsiHKCI	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
BsiSI	CCGG	3 cut(s)	159, 178, 710
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	295, 710
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	2 cut(s)	302, 315
BsoBI	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
Bsp1286I	GDGCHC	4 cut(s)	231, 381, 450, 587
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	508, 736
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	4 cut(s)	30, 184, 187, 704
BspANI	GGCC	2 cut(s)	302, 315
BspCNI	CTCAG	2 cut(s)	316, 322
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	5 cut(s)	163, 182, 345, 510, 738
BspPI	GGATC	3 cut(s)	503, 516, 731
BspT107I	GGYRCC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	4 cut(s)	246, 289, 303, 709
BssMI	GATC	2 cut(s)	508, 736
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	3 cut(s)	246, 289, 303
Bst4CI	ACNGT	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	309, 324, 741
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	511, 739
BstMBI	GATC	2 cut(s)	508, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 235, 329
BstSCI	CCNGG	2 cut(s)	708, 709
BstV1I	GCAGC	1 cut(s)	664
BstX2I	RGATCY	2 cut(s)	508, 736
BstYI	RGATCY	2 cut(s)	508, 736
BsuRI	GGCC	2 cut(s)	302, 315
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	628
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	313, 471
Cfr9I	CCCGGG	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	13, 49, 290, 614
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	309, 324, 741
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	2 cut(s)	510, 738
DpnII	GATC	2 cut(s)	508, 736
EaeI	YGGCCR	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	246, 289, 303
Eco24I	GRGCYC	2 cut(s)	231, 587
Eco47I	GGWCC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	582, 663
Eco88I	CYCGRG	5 cut(s)	108, 191, 224, 449, 709
EcoICRI	GAGCTC	1 cut(s)	585
EcoT14I	CCWWGG	3 cut(s)	246, 289, 303
EcoT38I	GRGCYC	2 cut(s)	231, 587
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
ErhI	CCWWGG	3 cut(s)	246, 289, 303
FaeI	CATG	4 cut(s)	16, 52, 293, 617
FaiI	YATR	7 cut(s)	14, 50, 291, 602, 615, 620, 720
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	12, 48, 289, 613
Fnu4HI	GCNGC	3 cut(s)	184, 187, 653
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	2 cut(s)	231, 587
Fsp4HI	GCNGC	3 cut(s)	184, 187, 653
FspBI	CTAG	3 cut(s)	122, 252, 264
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	3 cut(s)	184, 187, 653
GsuI	CTGGAG	2 cut(s)	113, 155
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	302, 315
HapII	CCGG	3 cut(s)	159, 178, 710
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	16, 52, 293, 617
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	205, 285, 482
HpaII	CCGG	3 cut(s)	159, 178, 710
HphI	GGTGA	2 cut(s)	138, 145
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	4 cut(s)	98, 204, 524, 573
Hpy188III	TCNNGA	5 cut(s)	130, 178, 193, 365, 512
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	313, 452, 638
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 235, 329
HpyF3I	CTNAG	3 cut(s)	309, 324, 741
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	4 cut(s)	16, 52, 293, 617
HspAI	GCGC	1 cut(s)	344
KasI	GGCGCC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	508, 736
LmnI	GCTCC	4 cut(s)	167, 180, 180, 711
Lsp1109I	GCAGC	1 cut(s)	664
MaeI	CTAG	3 cut(s)	122, 252, 264
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	81, 151
MalI	GATC	2 cut(s)	510, 738
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	2 cut(s)	508, 736
MboII	GAAGA	2 cut(s)	434, 622
MflI	RGATCY	2 cut(s)	508, 736
MhlI	GDGCHC	4 cut(s)	231, 381, 450, 587
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	259, 553, 662
MluNI	TGGCCA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	2 cut(s)	294, 491
Mox20I	TGGCCA	1 cut(s)	302
MroI	TCCGGA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	3 cut(s)	159, 178, 710
MspR9I	CCNGG	2 cut(s)	710, 711
MwoI	GCNNNNNNNGC	3 cut(s)	220, 235, 329
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	710, 711
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	508, 736
NlaIII	CATG	4 cut(s)	16, 52, 293, 617
NlaIV	GGNNCC	5 cut(s)	163, 182, 345, 510, 738
NmuCI	GTSAC	2 cut(s)	81, 151
PaeR7I	CTCGAG	3 cut(s)	191, 224, 449
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	185, 188, 654
PleI	GAGTC	2 cut(s)	293, 490
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	2 cut(s)	293, 490
Psp124BI	GAGCTC	1 cut(s)	587
PspN4I	GGNNCC	5 cut(s)	163, 182, 345, 510, 738
PspPI	GGNCC	2 cut(s)	313, 471
PspXI	VCTCGAGB	2 cut(s)	224, 449
PsuI	RGATCY	2 cut(s)	508, 736
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	587
SatI	GCNGC	3 cut(s)	184, 187, 653
Sau3AI	GATC	2 cut(s)	508, 736
Sau96I	GGNCC	2 cut(s)	313, 471
SchI	GAGTC	2 cut(s)	294, 491
ScrFI	CCNGG	2 cut(s)	710, 711
SduI	GDGCHC	4 cut(s)	231, 381, 450, 587
SfoI	GGCGCC	1 cut(s)	345
Sfr274I	CTCGAG	3 cut(s)	191, 224, 449
SinI	GGWCC	1 cut(s)	471
SlaI	CTCGAG	3 cut(s)	191, 224, 449
SmaI	CCCGGG	1 cut(s)	711
SmlI	CTYRAG	3 cut(s)	191, 224, 449
SmoI	CTYRAG	3 cut(s)	191, 224, 449
Sse9I	AATT	3 cut(s)	259, 553, 662
SsiI	CCGC	4 cut(s)	30, 184, 187, 704
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	3 cut(s)	122, 252, 264
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	708, 709
StyI	CCWWGG	3 cut(s)	246, 289, 303
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	5 cut(s)	192, 225, 275, 420, 450
TasI	AATT	3 cut(s)	259, 553, 662
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	81, 151
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	2 cut(s)	81, 151
TspDTI	ATGAA	2 cut(s)	655, 735
TspMI	CCCGGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	471
XhoI	CTCGAG	3 cut(s)	191, 224, 449
XmaI	CCCGGG	1 cut(s)	709
XspI	CTAG	3 cut(s)	122, 252, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.