Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

38533511 .. 38536541

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1167700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGCAAGTACATGAGCAAGTCCAAGGCCACAGGGAAAGTAGCAGTTATGGAAGTCTCACACTCACAGGCCTCTCTTGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGAGGTCCTCCGCTCCACCTGTCACATCCGGCTCCTATCTCCAGCTCCGTAGCCGCCGACTCGAGAAGTCCCCGATTCTTATGACCAAGCGGCTCGAACCCAAGAGGCAGAAACCCAAGACTGGTCCTAATTCTAGGTCAAGTACGAGGCTTGGGGTCGCGTCTCGATGCCAAAAGCCGGAGGAGGCTGAAGAAACGGCGGCGAAAGAGGAAGACGACAGACGACAGAATGAGCAGAGTAACACCAACAACGACGAAAATGGTGATTTGGGTGTCGAAGAAGCTTCGTTTGGAGAGAATGTGCTCGAGTTTGAAGGTAGAGAGAGAATCACAAGGGAGTCCACGCCGTGTAGCTTGATACGGGATCCAAACACTATCAGATCCCCTGGTTCTACTACCAGGCCCACTAATTCAGCTGAAGCTAATTGGAGAATACAGAACTCATTGCAGAGGCACATACCCACAGCACATGATATGAATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAAACAAAATTTATTGAGAAATATAACTTTGATCCTGTGAATGATAAACCGATCCCCGGACGTTATGAATGGGAGAAGGTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

237

Amino Acids

26.61

Weight (kDa)

8.81

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	188 - 234	3.6e-19	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	272
AciI	CCGC	4 cut(s)	123, 166, 202, 311
AclWI	GGATC	6 cut(s)	470, 483, 486, 647, 667, 698
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	3 cut(s)	321, 549, 630
AdeI	CACNNNGTG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	11, 256
AfiI	CCNNNNNNNGG	4 cut(s)	78, 233, 289, 677
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	496, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	6 cut(s)	107, 157, 395, 465, 527, 533
AluI	AGCT	6 cut(s)	107, 157, 395, 465, 527, 533
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	61, 279
AlwI	GGATC	6 cut(s)	470, 483, 486, 647, 667, 698
Ama87I	CYCGRG	3 cut(s)	90, 173, 416
AoxI	GGCC	3 cut(s)	27, 69, 512
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	117, 236, 513
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	3 cut(s)	90, 173, 416
AvaII	GGWCC	2 cut(s)	117, 236
BamHI	GGATCC	2 cut(s)	475, 703
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	631
BceAI	ACGGC	2 cut(s)	324, 442
BciT130I	CCWGG	2 cut(s)	498, 511
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	61, 279
BfaI	CTAG	2 cut(s)	104, 246
BisI	GCNGC	4 cut(s)	166, 203, 312, 620
BlsI	GCNGC	4 cut(s)	167, 204, 313, 621
Bme1390I	CCNGG	3 cut(s)	498, 511, 678
Bme18I	GGWCC	2 cut(s)	117, 236
BmeT110I	CYCGRG	3 cut(s)	90, 173, 416
BmgT120I	GGNCC	3 cut(s)	117, 236, 513
BmiI	GGNNCC	3 cut(s)	145, 477, 705
BmrFI	CCNGG	3 cut(s)	498, 511, 678
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	2 cut(s)	95, 137
BpuMI	CCSGG	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	24, 496, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 233, 289, 677
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	498, 511
BseDI	CCNNGG	3 cut(s)	24, 496, 676
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	78, 233, 289, 677
BseMI	GCAATG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	29, 71, 514
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	3 cut(s)	90, 173, 416
BsiSI	CCGG	3 cut(s)	141, 290, 678
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	4 cut(s)	78, 233, 289, 677
BsmAI	GTCTC	2 cut(s)	61, 279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	29, 71, 514
BsoBI	CYCGRG	3 cut(s)	90, 173, 416
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	475, 491, 652, 672, 703
BspACI	CCGC	4 cut(s)	123, 166, 202, 311
BspANI	GGCC	3 cut(s)	29, 71, 514
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	145, 477, 705
BspPI	GGATC	6 cut(s)	470, 483, 486, 647, 667, 698
BspQI	GCTCTTC	1 cut(s)	609
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	24, 496, 676
BssMI	GATC	5 cut(s)	475, 491, 652, 672, 703
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	498, 511
Bst6I	CTCTTC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	5 cut(s)	478, 494, 655, 675, 706
BstMAI	GTCTC	2 cut(s)	61, 279
BstMBI	GATC	5 cut(s)	475, 491, 652, 672, 703
BstNI	CCWGG	2 cut(s)	498, 511
BstSCI	CCNGG	3 cut(s)	496, 509, 676
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	3 cut(s)	475, 491, 703
BstYI	RGATCY	3 cut(s)	475, 491, 703
BsuRI	GGCC	3 cut(s)	29, 71, 514
BtsCI	GGATG	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	117, 236, 513
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	10, 255
CviAII	CATG	2 cut(s)	13, 581
CviQI	GTAC	2 cut(s)	10, 255
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	5 cut(s)	477, 493, 654, 674, 705
DpnII	GATC	5 cut(s)	475, 491, 652, 672, 703
DraIII	CACNNNGTG	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	117, 236
Eco57I	CTGAAG	3 cut(s)	321, 549, 630
Eco88I	CYCGRG	3 cut(s)	90, 173, 416
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	496, 509
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	2 cut(s)	16, 584
FaiI	YATR	8 cut(s)	14, 50, 194, 569, 582, 587, 645, 687
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	12, 580
Fnu4HI	GCNGC	4 cut(s)	166, 203, 312, 620
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	166, 203, 312, 620
FspBI	CTAG	2 cut(s)	104, 246
GluI	GCNGC	4 cut(s)	166, 203, 312, 620
GsuI	CTGGAG	2 cut(s)	95, 137
HaeIII	GGCC	3 cut(s)	29, 71, 514
HapII	CCGG	3 cut(s)	141, 290, 678
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	16, 584
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	4 cut(s)	171, 187, 438, 449
HpaII	CCGG	3 cut(s)	141, 290, 678
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	491
Hpy188III	TCNNGA	3 cut(s)	112, 175, 276
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	419, 691
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	1 cut(s)	559
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	2 cut(s)	16, 584
Kzo9I	GATC	5 cut(s)	475, 491, 652, 672, 703
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	3 cut(s)	130, 149, 162
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	104, 246
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	2 cut(s)	133, 350
MalI	GATC	5 cut(s)	477, 493, 654, 674, 705
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	475, 491, 652, 672, 703
MboII	GAAGA	5 cut(s)	314, 335, 401, 623, 626
MflI	RGATCY	3 cut(s)	475, 491, 703
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	4 cut(s)	241, 520, 535, 629
MlyI	GAGTC	2 cut(s)	165, 458
MnlI	CCTC	9 cut(s)	82, 108, 130, 210, 252, 286, 289, 313, 555
MroXI	GAANNNNTTC	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	3 cut(s)	141, 290, 678
MspR9I	CCNGG	3 cut(s)	498, 511, 678
MvaI	CCWGG	2 cut(s)	498, 511
MvnI	CGCG	1 cut(s)	272
NciI	CCSGG	1 cut(s)	678
NdeII	GATC	5 cut(s)	475, 491, 652, 672, 703
NlaIII	CATG	2 cut(s)	16, 584
NlaIV	GGNNCC	3 cut(s)	145, 477, 705
NmuCI	GTSAC	1 cut(s)	133
PaeR7I	CTCGAG	2 cut(s)	173, 416
PceI	AGGCCT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	187, 438
PkrI	GCNGC	4 cut(s)	167, 204, 313, 621
PleI	GAGTC	2 cut(s)	165, 457
PpsI	GAGTC	2 cut(s)	165, 457
PpuMI	RGGWCCY	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	496, 509
PspGI	CCWGG	2 cut(s)	496, 509
PspN4I	GGNNCC	3 cut(s)	145, 477, 705
PspPI	GGNCC	3 cut(s)	117, 236, 513
PspPPI	RGGWCCY	1 cut(s)	117
PspXI	VCTCGAGB	1 cut(s)	416
PsuI	RGATCY	3 cut(s)	475, 491, 703
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	11, 256
RsaNI	GTAC	2 cut(s)	10, 255
SapI	GCTCTTC	1 cut(s)	609
SatI	GCNGC	4 cut(s)	166, 203, 312, 620
Sau3AI	GATC	5 cut(s)	475, 491, 652, 672, 703
Sau96I	GGNCC	3 cut(s)	117, 236, 513
SchI	GAGTC	2 cut(s)	165, 458
ScrFI	CCNGG	3 cut(s)	498, 511, 678
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	269
Sfr274I	CTCGAG	2 cut(s)	173, 416
SinI	GGWCC	2 cut(s)	117, 236
SlaI	CTCGAG	2 cut(s)	173, 416
SmlI	CTYRAG	2 cut(s)	173, 416
SmoI	CTYRAG	2 cut(s)	173, 416
Sse9I	AATT	4 cut(s)	241, 520, 535, 629
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	123, 166, 202, 311
SspMI	CTAG	2 cut(s)	104, 246
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	496, 509, 676
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	5 cut(s)	174, 207, 277, 387, 417
TasI	AATT	4 cut(s)	241, 520, 535, 629
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	3 cut(s)	168, 205, 314
TfiI	GAWTC	2 cut(s)	187, 438
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	602, 702
TspGWI	ACGGA	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	117, 236
XapI	RAATTY	1 cut(s)	629
XhoI	CTCGAG	2 cut(s)	173, 416
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	104, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.