Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

17581229 .. 17583307

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGGAAATACATGAAGAAATCGAAAATTTCCGGCGACGTAGCCGTGATGGAGGTCTCCATTTCGCCGCAGTCCTCTCTCGGCGTTCGGACCAGAGCCAAAACCCTAGCCCTCCAAAAGCTCCAGCAGCAGCAGCAGCAGCAGAAGCAAGAGAATCAAGATCAATCCCCCGCCGGAGAATCGGACTCAGATAGCTCCTCCCTGTACTACCTCCAGCTGAGGAGCCGCCGTCTAGAGAAGCCCCCGTTGCGAAACGACGCCGTCAAGAAGCAGTGCCAGAGCGGCGGAATTAATGAGCCCTCGGAGAAGCCCAGAGGAGGCTGCTGCGGGGAAAGCCGACGGCGGCCGGTGGAATCGAGGCCCAAATCCAGGCTGAGCGTGGGCTCGTCGGTGGAGTTGGACTGGGCTGGACCCGTTGAGAGGAAAGAGAAGGAAGGGGAGGAGGGGTGTTTTGGTAATTTCGGAAGTGGAGCAGAGTATGGTAACGATTTGGGGGTCGAGGCTTCGTTTGGGGAAAACAACTTGGATTTTGAAGCCAGAGACAGGAGCACTAGAGAAACCACTCCGTGCAGCTTCATAAGGGAGTCAGACACAATAGGAACCCCCGGTTCCACCACAAGGCGGACGAGTTCTATTTCAACTCACCGGAGAGTTAGAAACGATGTGCAAAGAAATATCCCAACCACGCTTGAGATGGAGGAGTTCTTTGCCCGACATGAGGAGGAGCAACAGAAAATCTTCATTGAGAAGTACAACTTTGACATCATCAACGATTTACCCCTTCCCGGAAGGTATGAATGGGAGCAAGTGATTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

273

Amino Acids

30.7

Weight (kDa)

6.28

Isoelectric Point (pI)

67.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	282
AciI	CCGC	8 cut(s)	68, 171, 226, 282, 285, 327, 343, 622
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	206, 752
AfiI	CCNNNNNNNGG	8 cut(s)	317, 369, 420, 543, 618, 621, 718, 785
AgsI	TTSAA	2 cut(s)	533, 639
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	121, 195, 217, 573
AluI	AGCT	4 cut(s)	121, 195, 217, 573
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	61, 534
AoxI	GGCC	2 cut(s)	344, 359
ApeKI	GCWGC	8 cut(s)	127, 130, 133, 136, 139, 321, 324, 570
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	737
AspS9I	GGNCC	3 cut(s)	90, 360, 410
AsuC2I	CCSGG	2 cut(s)	606, 786
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	90, 410
BanII	GRGCYC	2 cut(s)	300, 386
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	8 cut(s)	139, 142, 145, 148, 151, 308, 311, 582
BccI	CCATC	2 cut(s)	43, 688
BceAI	ACGGC	4 cut(s)	29, 213, 245, 356
BciT130I	CCWGG	1 cut(s)	370
BcnI	CCSGG	2 cut(s)	606, 786
BcoDI	GTCTC	2 cut(s)	61, 534
BfaI	CTAG	3 cut(s)	107, 233, 552
BglI	GCCNNNNNGGC	1 cut(s)	282
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	3 cut(s)	370, 606, 786
Bme18I	GGWCC	2 cut(s)	90, 410
BmgT120I	GGNCC	3 cut(s)	90, 360, 410
BmiI	GGNNCC	4 cut(s)	224, 412, 601, 610
BmrFI	CCNGG	3 cut(s)	370, 606, 786
BmrI	ACTGGG	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	107, 197
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	606, 786
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	300, 604
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 431, 461
Bsc4I	CCNNNNNNNGG	8 cut(s)	317, 369, 420, 543, 618, 621, 718, 785
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	300, 604
BseLI	CCNNNNNNNGG	8 cut(s)	317, 369, 420, 543, 618, 621, 718, 785
BseMII	CTCAG	3 cut(s)	201, 209, 365
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	7 cut(s)	187, 235, 330, 455, 713, 734, 737
BseX3I	CGGCCG	1 cut(s)	344
BseXI	GCAGC	8 cut(s)	139, 142, 145, 148, 151, 308, 311, 582
BsgI	GTGCAG	1 cut(s)	589
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	346, 361
BsiEI	CGRYCG	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	6 cut(s)	33, 174, 347, 606, 646, 786
BslI	CCNNNNNNNGG	8 cut(s)	317, 369, 420, 543, 618, 621, 718, 785
BsmAI	GTCTC	2 cut(s)	61, 534
BsnI	GGCC	2 cut(s)	346, 361
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	3 cut(s)	300, 386, 551
Bsp143I	GATC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	8 cut(s)	68, 171, 226, 282, 285, 327, 343, 622
BspANI	GGCC	2 cut(s)	346, 361
BspCNI	CTCAG	3 cut(s)	200, 210, 366
BspLI	GGNNCC	4 cut(s)	224, 412, 601, 610
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	300, 604
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	187, 218, 374
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	61, 534
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	8 cut(s)	127, 133, 136, 139, 145, 247, 282, 333
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	368, 604, 784
BstV1I	GCAGC	8 cut(s)	139, 142, 145, 148, 151, 308, 311, 582
BstZI	CGGCCG	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	346, 361
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	90, 360, 410
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	205, 751
CviAII	CATG	2 cut(s)	13, 716
CviQI	GTAC	2 cut(s)	205, 751
DdeI	CTNAG	3 cut(s)	187, 218, 374
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraIII	CACNNNGTG	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	344
EagI	CGGCCG	1 cut(s)	344
EciI	GGCGGA	2 cut(s)	300, 637
EclXI	CGGCCG	1 cut(s)	344
Eco24I	GRGCYC	2 cut(s)	300, 386
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	90, 410
Eco52I	CGGCCG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	300, 386
FaeI	CATG	2 cut(s)	16, 719
FaiI	YATR	5 cut(s)	14, 480, 578, 717, 795
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FatI	CATG	2 cut(s)	12, 715
FauI	CCCGC	2 cut(s)	178, 320
FriOI	GRGCYC	2 cut(s)	300, 386
FspBI	CTAG	3 cut(s)	107, 233, 552
GsuI	CTGGAG	2 cut(s)	107, 197
HaeIII	GGCC	2 cut(s)	346, 361
HapII	CCGG	6 cut(s)	33, 174, 347, 606, 646, 786
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	16, 719
HinfI	GANTC	6 cut(s)	154, 179, 185, 353, 584, 811
HpaII	CCGG	6 cut(s)	33, 174, 347, 606, 646, 786
HphI	GGTGA	1 cut(s)	635
Hpy188I	TCNGA	6 cut(s)	90, 184, 190, 304, 464, 589
Hpy188III	TCNNGA	3 cut(s)	158, 233, 265
Hpy99I	CGWCG	4 cut(s)	41, 260, 342, 391
HpyAV	CCTTC	4 cut(s)	424, 428, 783, 791
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	570, 667
HpyF10VI	GCNNNNNNNGC	8 cut(s)	127, 133, 136, 139, 145, 247, 282, 333
HpyF3I	CTNAG	3 cut(s)	187, 218, 374
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	16, 719
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	7 cut(s)	126, 200, 222, 470, 546, 724, 802
Lsp1109I	GCAGC	8 cut(s)	139, 142, 145, 148, 151, 308, 311, 582
MaeI	CTAG	3 cut(s)	107, 233, 552
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	28, 730
MhlI	GDGCHC	3 cut(s)	300, 386, 551
MluCI	AATT	3 cut(s)	27, 288, 457
MlyI	GAGTC	2 cut(s)	179, 593
MmeI	TCCRAC	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	6 cut(s)	33, 174, 347, 606, 646, 786
MspR9I	CCNGG	3 cut(s)	370, 606, 786
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	8 cut(s)	127, 133, 136, 139, 145, 247, 282, 333
NciI	CCSGG	2 cut(s)	606, 786
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	16, 719
NlaIV	GGNNCC	4 cut(s)	224, 412, 601, 610
NmeAIII	GCCGAG	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	4 cut(s)	154, 179, 353, 811
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	784
PleI	GAGTC	2 cut(s)	179, 592
PpsI	GAGTC	2 cut(s)	179, 592
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	4 cut(s)	224, 412, 601, 610
PspPI	GGNCC	3 cut(s)	90, 360, 410
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	206, 752
RsaNI	GTAC	2 cut(s)	205, 751
SaqAI	TTAA	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	3 cut(s)	90, 360, 410
SchI	GAGTC	2 cut(s)	179, 593
ScrFI	CCNGG	3 cut(s)	370, 606, 786
SduI	GDGCHC	3 cut(s)	300, 386, 551
SetI	ASST	8 cut(s)	42, 57, 123, 197, 213, 219, 575, 794
SinI	GGWCC	2 cut(s)	90, 410
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	3 cut(s)	27, 288, 457
SsiI	CCGC	8 cut(s)	68, 171, 226, 282, 285, 327, 343, 622
SspMI	CTAG	3 cut(s)	107, 233, 552
StyD4I	CCNGG	3 cut(s)	368, 604, 784
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	23, 356, 498
TasI	AATT	3 cut(s)	27, 288, 457
TatI	WGTACW	2 cut(s)	204, 750
TauI	GCSGC	4 cut(s)	70, 228, 285, 346
TfiI	GAWTC	4 cut(s)	154, 179, 353, 811
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	8 cut(s)	127, 130, 133, 136, 139, 321, 324, 570
TspDTI	ATGAA	4 cut(s)	29, 565, 730, 810
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	90, 410
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 691
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	3 cut(s)	107, 233, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.