Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

25543497 .. 25544011

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1164800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGAAATACATGAAGAAATCGAAAATTTTCGGCGACGTAGCCGTGATGGAGGTCTCCATTTCGCCGCAGTCCTCTCTCGGAGTTCGGACCAGAGCCAAAACCCTAGCCCTCCAAAAGCTCCAGCAGCAGCAGCAGCAGAAGCAAGAGAATCAAGATCAATCCCCCTCCGGAGAATCGGACTCAGATAGCTCCTCCCTGTACTACCTCCAGCTCAGGAGCCGCCGTCTAGAGAAACCCCCGTTGCGAAACGACGCCGTCAAGAAGCAGAGCCAGAGCGGCGGAATTAATGAGCCCTCGGAGAAGCCCGGAGGAGCTGCTGCTGCGGGGAAAGCCGACGGGGGCCGGTGGAATCGAGGCCCAAATCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

125

Amino Acids

13.49

Weight (kDa)

9.93

Isoelectric Point (pI)

92.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	5 cut(s)	68, 223, 279, 282, 326
AcsI	RAATTY	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	121, 192, 214, 317
AluI	AGCT	4 cut(s)	121, 192, 214, 317
Alw26I	GTCTC	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	2 cut(s)	343, 358
ApeKI	GCWGC	7 cut(s)	127, 130, 133, 136, 317, 320, 323
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	90, 343, 359
AsuC2I	CCSGG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	139, 142, 145, 148, 304, 307, 310
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	3 cut(s)	29, 210, 242
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	107, 230
BglI	GCCNNNNNGGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	90, 343, 359
BmiI	GGNNCC	2 cut(s)	221, 344
BmrFI	CCNGG	1 cut(s)	309
BpmI	CTGGAG	2 cut(s)	107, 194
Bpu10I	CCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	198, 229
BseRI	GAGGAG	2 cut(s)	184, 327
BseXI	GCAGC	7 cut(s)	139, 142, 145, 148, 304, 307, 310
BshFI	GGCC	2 cut(s)	345, 360
BsiSI	CCGG	3 cut(s)	171, 309, 346
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	345, 360
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	5 cut(s)	68, 223, 279, 282, 326
BspANI	GGCC	2 cut(s)	345, 360
BspCNI	CTCAG	2 cut(s)	197, 228
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	221, 344
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	184, 215
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 133, 136, 142, 279, 323, 332
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	7 cut(s)	139, 142, 145, 148, 304, 307, 310
BsuRI	GGCC	2 cut(s)	345, 360
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	3 cut(s)	90, 343, 359
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	184, 215
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	2 cut(s)	107, 230
GsuI	CTGGAG	2 cut(s)	107, 194
HaeIII	GGCC	2 cut(s)	345, 360
HapII	CCGG	3 cut(s)	171, 309, 346
HgaI	GACGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	4 cut(s)	151, 176, 182, 352
HpaII	CCGG	3 cut(s)	171, 309, 346
Hpy188I	TCNGA	5 cut(s)	83, 90, 181, 187, 301
Hpy188III	TCNNGA	5 cut(s)	155, 171, 217, 230, 262
Hpy99I	CGWCG	3 cut(s)	41, 257, 341
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 133, 136, 142, 279, 323, 332
HpyF3I	CTNAG	2 cut(s)	184, 215
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	4 cut(s)	126, 197, 219, 314
LpnPI	CCDG	9 cut(s)	106, 137, 184, 202, 212, 224, 287, 322, 359
Lsp1109I	GCAGC	7 cut(s)	139, 142, 145, 148, 304, 307, 310
MaeI	CTAG	2 cut(s)	107, 230
MaeII	ACGT	1 cut(s)	39
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	2 cut(s)	27, 285
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	9 cut(s)	46, 85, 122, 178, 205, 218, 305, 307, 350
MroI	TCCGGA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	288
MspI	CCGG	3 cut(s)	171, 309, 346
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	7 cut(s)	127, 133, 136, 142, 279, 323, 332
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	221, 344
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	151, 176, 352
PflFI	GACNNNGTC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	221, 344
PspPI	GGNCC	3 cut(s)	90, 343, 359
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	90, 343, 359
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	7 cut(s)	42, 57, 123, 194, 210, 216, 319
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	2 cut(s)	27, 285
SsiI	CCGC	5 cut(s)	68, 223, 279, 282, 326
SspMI	CTAG	2 cut(s)	107, 230
StyD4I	CCNGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	23, 355
TasI	AATT	2 cut(s)	27, 285
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	70, 225, 282
TfiI	GAWTC	3 cut(s)	151, 176, 352
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	7 cut(s)	127, 130, 133, 136, 317, 320, 323
TspDTI	ATGAA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	107, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.