Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

689663 .. 692565

Gene Structure 2903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1005800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGCAAGTACATGAGGAAGTCCAAGCCCACAGGGGAAGTAGCAATCATGGAAGTCTCACACTCCCAACCCTCTCTTGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGAGGTCGTCGGCTCAACCTGTCACCTCCGCCTCCTATCTTCAGCTCCGTAGCCGCCGACTCGAGAAGCCCCCGATTCTTATGACCAAGCGGCTCGAGCCCAGAAGGCAGAAACCCAAGACTGGTCCTAATTCCAGGGCAAGTTCGAGGCTTGGGGTCGAGTCTCGGTGCCAAAAGGCTGAGGCATCTGAGGAAACGGCGGCGAAAGAGGAAGAGGACCGAGGACAGAATGAGCAGGGTAACACCAACGACAACGAAAATGGTGATTTGGGTGTCGAAGAAGCTTCGTTTGGAGAGAATGTGCTCGAGTTCGAAGGTAGAGAGAGAACCACAAGGGAGTCCACGCCGTGTAGCTTGATACGGGATCCAGACATCATCAGAACCCCTGGTTCTACTACCAGGCCCACTAGTTCAGCTGAAGCTAATCGGAGAATACAGAACTCGTCGCAGAGGCACATACCCACAGCACATGATATGAATGAGTTCTTTGCTGGTGCTGAAGAAGAGATGCAAAAGAAATTCATTGAGAAATACAACTATGACCCTGTGAATGACAAGCCGCTCCCCGGGCGTTATGAATGGGAAAAGGTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

237

Amino Acids

26.65

Weight (kDa)

8.47

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	188 - 234	6.5e-20	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AccBSI	CCGCTC	1 cut(s)	673
AciI	CCGC	5 cut(s)	141, 166, 202, 311, 671
AclWI	GGATC	3 cut(s)	470, 483, 698
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	3 cut(s)	137, 549, 630
AdeI	CACNNNGTG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	4 cut(s)	77, 78, 233, 677
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	3 cut(s)	245, 496, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	6 cut(s)	107, 157, 395, 465, 527, 533
AluI	AGCT	6 cut(s)	107, 157, 395, 465, 527, 533
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	61, 279
AlwI	GGATC	3 cut(s)	470, 483, 698
Ama87I	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
AoxI	GGCC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	629
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	236, 328, 513
AsuC2I	CCSGG	2 cut(s)	678, 679
AsuHPI	GGTGA	2 cut(s)	127, 386
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
AvaII	GGWCC	2 cut(s)	236, 328
BamHI	GGATCC	2 cut(s)	475, 703
BanI	GGYRCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	291
BceAI	ACGGC	2 cut(s)	324, 442
BciT130I	CCWGG	3 cut(s)	247, 498, 511
BcnI	CCSGG	2 cut(s)	678, 679
BcoDI	GTCTC	2 cut(s)	61, 279
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	104, 519
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	166, 203, 312, 671
BlsI	GCNGC	4 cut(s)	167, 204, 313, 672
Bme1390I	CCNGG	5 cut(s)	247, 498, 511, 678, 679
Bme18I	GGWCC	2 cut(s)	236, 328
BmeT110I	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
BmgT120I	GGNCC	3 cut(s)	236, 328, 513
BmiI	GGNNCC	3 cut(s)	281, 477, 705
BmrFI	CCNGG	5 cut(s)	247, 498, 511, 678, 679
BmsI	GCATC	2 cut(s)	305, 609
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	678, 679
BsaJI	CCNNGG	5 cut(s)	246, 331, 496, 676, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 78, 233, 677
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	247, 498, 511
BseDI	CCNNGG	5 cut(s)	246, 331, 496, 676, 677
BseLI	CCNNNNNNNGG	4 cut(s)	77, 78, 233, 677
BseMII	CTCAG	2 cut(s)	282, 291
BseNI	ACTGG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	514
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	4 cut(s)	77, 78, 233, 677
BsmAI	GTCTC	2 cut(s)	61, 279
BsnI	GGCC	1 cut(s)	514
BsoBI	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	213, 417
Bsp143I	GATC	2 cut(s)	475, 703
BspACI	CCGC	5 cut(s)	141, 166, 202, 311, 671
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	2 cut(s)	283, 292
BspLI	GGNNCC	3 cut(s)	281, 477, 705
BspPI	GGATC	3 cut(s)	470, 483, 698
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	279
BsrBI	CCGCTC	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	5 cut(s)	246, 331, 496, 676, 677
BssMI	GATC	2 cut(s)	475, 703
Bst2UI	CCWGG	3 cut(s)	247, 498, 511
Bst6I	CTCTTC	2 cut(s)	318, 609
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	291, 300, 708
BstKTI	GATC	2 cut(s)	478, 706
BstMAI	GTCTC	2 cut(s)	61, 279
BstMBI	GATC	2 cut(s)	475, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 217, 679
BstNI	CCWGG	3 cut(s)	247, 498, 511
BstSCI	CCNGG	5 cut(s)	245, 496, 509, 676, 677
BstX2I	RGATCY	2 cut(s)	475, 703
BstYI	RGATCY	2 cut(s)	475, 703
BsuRI	GGCC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	236, 328, 513
Cfr9I	CCCGGG	1 cut(s)	677
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	13, 49, 581
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	291, 300, 708
DpnI	GATC	2 cut(s)	477, 705
DpnII	GATC	2 cut(s)	475, 703
DraIII	CACNNNGTG	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	318, 609
EarI	CTCTTC	2 cut(s)	318, 609
EciI	GGCGGA	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	236, 328
Eco57I	CTGAAG	3 cut(s)	137, 549, 630
Eco88I	CYCGRG	5 cut(s)	90, 173, 206, 416, 677
EcoRII	CCWGG	3 cut(s)	245, 496, 509
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	3 cut(s)	16, 52, 584
FaiI	YATR	8 cut(s)	14, 50, 194, 569, 582, 587, 651, 687
FatI	CATG	3 cut(s)	12, 48, 580
Fnu4HI	GCNGC	4 cut(s)	166, 203, 312, 671
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	166, 203, 312, 671
FspBI	CTAG	2 cut(s)	104, 519
GluI	GCNGC	4 cut(s)	166, 203, 312, 671
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	1 cut(s)	678
Hin1II	CATG	3 cut(s)	16, 52, 584
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	4 cut(s)	171, 187, 272, 449
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	2 cut(s)	127, 386
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	301, 491, 540
Hpy188III	TCNNGA	3 cut(s)	112, 175, 479
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	2 cut(s)	124, 559
HpyAV	CCTTC	2 cut(s)	210, 419
HpyCH4V	TGCA	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 217, 679
HpyF3I	CTNAG	3 cut(s)	291, 300, 708
Hsp92II	CATG	3 cut(s)	16, 52, 584
Kzo9I	GATC	2 cut(s)	475, 703
LmnI	GCTCC	2 cut(s)	162, 678
LweI	GCATC	2 cut(s)	305, 609
MaeI	CTAG	2 cut(s)	104, 519
MaeIII	GTNAC	2 cut(s)	133, 350
MalI	GATC	2 cut(s)	477, 705
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	2 cut(s)	475, 703
MboII	GAAGA	5 cut(s)	143, 335, 401, 623, 626
MflI	RGATCY	2 cut(s)	475, 703
MhlI	GDGCHC	2 cut(s)	213, 417
MluCI	AATT	2 cut(s)	241, 629
MlyI	GAGTC	3 cut(s)	165, 281, 458
MroXI	GAANNNNTTC	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	5 cut(s)	247, 498, 511, 678, 679
MvaI	CCWGG	3 cut(s)	247, 498, 511
MwoI	GCNNNNNNNGC	3 cut(s)	208, 217, 679
NciI	CCSGG	2 cut(s)	678, 679
NdeII	GATC	2 cut(s)	475, 703
NlaIII	CATG	3 cut(s)	16, 52, 584
NlaIV	GGNNCC	3 cut(s)	281, 477, 705
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	423
PaeR7I	CTCGAG	3 cut(s)	173, 206, 416
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	167, 204, 313, 672
PleI	GAGTC	3 cut(s)	165, 280, 457
PpsI	GAGTC	3 cut(s)	165, 280, 457
Psp6I	CCWGG	3 cut(s)	245, 496, 509
PspGI	CCWGG	3 cut(s)	245, 496, 509
PspN4I	GGNNCC	3 cut(s)	281, 477, 705
PspPI	GGNCC	3 cut(s)	236, 328, 513
PspXI	VCTCGAGB	2 cut(s)	206, 416
PsuI	RGATCY	2 cut(s)	475, 703
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	4 cut(s)	166, 203, 312, 671
Sau3AI	GATC	2 cut(s)	475, 703
Sau96I	GGNCC	3 cut(s)	236, 328, 513
SchI	GAGTC	3 cut(s)	165, 281, 458
ScrFI	CCNGG	5 cut(s)	247, 498, 511, 678, 679
SduI	GDGCHC	2 cut(s)	213, 417
SfaNI	GCATC	2 cut(s)	305, 609
Sfr274I	CTCGAG	3 cut(s)	173, 206, 416
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	2 cut(s)	236, 328
SlaI	CTCGAG	3 cut(s)	173, 206, 416
SmaI	CCCGGG	1 cut(s)	679
SmlI	CTYRAG	3 cut(s)	173, 206, 416
SmoI	CTYRAG	3 cut(s)	173, 206, 416
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	2 cut(s)	241, 629
SsiI	CCGC	5 cut(s)	141, 166, 202, 311, 671
SspMI	CTAG	2 cut(s)	104, 519
StyD4I	CCNGG	5 cut(s)	245, 496, 509, 676, 677
TaqI	TCGA	7 cut(s)	174, 207, 257, 270, 387, 417, 423
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	241, 629
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	4 cut(s)	168, 205, 314, 673
TfiI	GAWTC	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	602, 622, 702
TspGWI	ACGGA	1 cut(s)	149
TspMI	CCCGGG	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	236, 328
XapI	RAATTY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XhoI	CTCGAG	3 cut(s)	173, 206, 416
XmaI	CCCGGG	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	104, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.