Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

47525433 .. 47528647

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAAAGTACATGAAGAAATCCAAGATCACAGGCGACATCGCCGTCATGGAGGTTTCAATTTCACCTCAGTCCTCCCTCGGCGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAGAAGCTCCACCAGCAGCAGCAGCAATCGCCCGACTCCGATTCCTCGTCTCTCTACTATCTCCAGCTCCGAAGCCGCCGCCTTGAGAAGCCGCCGCTGCGAAGCGACGCCAACAAGCAGGCTCAGGGTCCTCGGGATTGCTGCGCGGCGGGCAGGGCCGTGAATTCGAGGTTGAGTGTGGGCTCGTCGGCGGATTTGGGCTGGGATGAGAGGAACGAGAAGGACGGGGAGGGGTGTTTTGGTAATGTTGAAAGTGAAGCAGAGTATGCCGACGATGTTGAGGCTTCATTTGGGGAAAACAACTTGGATTTTGATGGCAGAGATAGGTATATTTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTATTCAAATTTGAAAAACATTTTTTTTTTGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

175

Amino Acids

19.43

Weight (kDa)

5.9

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	260
AciI	CCGC	7 cut(s)	190, 193, 206, 209, 260, 263, 305
AcsI	RAATTY	2 cut(s)	277, 496
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	60, 365, 495, 502
AluBI	AGCT	2 cut(s)	121, 181
AluI	AGCT	2 cut(s)	121, 181
Alw26I	GTCTC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	5 cut(s)	130, 133, 136, 211, 255
ApoI	RAATTY	2 cut(s)	277, 496
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	242, 270
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	142, 145, 148, 198, 242
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	2 cut(s)	29, 257
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	242, 270
BmiI	GGNNCC	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	98, 161
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	79, 245
BseDI	CCNNGG	2 cut(s)	79, 245
BseGI	GGATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	83, 251
BseXI	GCAGC	5 cut(s)	142, 145, 148, 198, 242
BseYI	CCCAGC	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	7 cut(s)	190, 193, 206, 209, 260, 263, 305
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	82, 250
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	79, 245
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	234, 265
BstDEI	CTNAG	2 cut(s)	69, 237
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 269, 380
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	5 cut(s)	142, 145, 148, 198, 242
BsuRI	GGCC	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	234, 265
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	242, 270
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	13, 49
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	69, 237
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	16, 52
FaiI	YATR	4 cut(s)	14, 50, 381, 444
FatI	CATG	2 cut(s)	12, 48
FauI	CCCGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	259
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	2 cut(s)	98, 161
HaeIII	GGCC	1 cut(s)	272
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	16, 52
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	149, 155
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	154, 185
Hpy188III	TCNNGA	2 cut(s)	115, 248
Hpy99I	CGWCG	3 cut(s)	224, 304, 389
HpyAV	CCTTC	2 cut(s)	328, 461
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 269, 380
HpyF3I	CTNAG	2 cut(s)	69, 237
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	16, 52
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	126, 186
LpnPI	CCDG	9 cut(s)	18, 106, 128, 140, 191, 218, 224, 253, 301
Lsp1109I	GCAGC	5 cut(s)	142, 145, 148, 198, 242
MaeI	CTAG	1 cut(s)	107
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	60, 277, 496
MlyI	GAGTC	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	7 cut(s)	127, 136, 142, 211, 264, 269, 380
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	16, 52
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	242, 270
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	2 cut(s)	242, 270
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	57, 70, 123, 183, 287, 443
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	60, 277, 496
SsiI	CCGC	7 cut(s)	190, 193, 206, 209, 260, 263, 305
SspMI	CTAG	1 cut(s)	107
TaqI	TCGA	2 cut(s)	88, 281
TasI	AATT	3 cut(s)	60, 277, 496
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	5 cut(s)	192, 195, 208, 211, 263
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	130, 133, 136, 211, 255
TspDTI	ATGAA	2 cut(s)	29, 390
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	277, 496
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.