Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

24800925 .. 24802337

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAATAGTTGACAATGAAGATGTAGCTAGTTGGGTGTGTGACAGCCTTTCCATGCAACCTAACAAGATTCTATTATATATTACTTTGGAACGCAGGTTATCAAGATATGTAAGTGGAAGTAATCAAGGCATGACCAGTGGACCTAACCCACCTTTTCAATATGATGATGTTGTCTCAACAATTTTCTCTACTGAAGTTGAAGATCAGCACCCAATTGCATTGAGTTTTCTGCAGGAGCCATTAGTGGTAAACTCTAGGTTGGACAATGGTGATAATGTCTCATACGAAAATAGAGAGGAAGATGAGTTTCCACATTCCAATTGGGATAATAAGAGTCCAATTGACAGTGTAGAAATTGGAAGTAAGCAACTTGAGAATGTCAACTATGTTCCATCATCTTCTTATCGTTGCAAGAGAAGGCGCATACAAGACTATAAGAATGTTGCATTTGTGGACACCAGTGAAGATATTTTGGTAGGTCAGTTATACCCAAGTAAGAAAGCCTTGAAGCAACATTTAGGTATGCTCGCAATAAGAAAGAATCATGAGTTTAAAGTGAAAAAATCTACTAGTAATGAGTTTGAAGTTGGGTGGGTGGATCCTAGCTACAAAGAAAATGATGCCTCATGGTCATGGTTTTTGACAAAATTGAGAGCGGCCATTGGAGTTATGGAGAATTTGGTCTTCATATCTGATTGGCATGGAAGCATCGCTAAAGCTGTGGATAAAATTTTTCCTAATGCATATCATGGAGCCTGCATCTTTCATTTCGCTAACAACTTGCAATCAAAGTTCGGCAAAAACATGAAAATCCTCAAGTTATTTTACACAGCGGCAAAGAAGTACCAAGTATCCGAGTTCAATAGATTGATGGATGACATTCAAAAAATAAAAGAGGGGGAAGTTTGTAAGTATCTTGAAGACATTGGGTGTCATAAGCTTCGAGTTCATAGATACACCCAACATGATGACATTGGATGCTCTAAAATTACGAATTACTGCTCTAGTGGATCACCTAAGAGAGGTGCTTCAACAATAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

349

Amino Acids

39.93

Weight (kDa)

6.56

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	205 - 261	1.3e-09	MULE transposase domain
Transposase_mut	PF00872	205 - 310	1.4e-08	Transposase, Mutator family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	87
AccBSI	CCGCTC	1 cut(s)	659
AciI	CCGC	2 cut(s)	659, 836
AclWI	GGATC	3 cut(s)	596, 609, 1021
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	679, 732
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	1 cut(s)	1025
AgsI	TTSAA	8 cut(s)	161, 203, 511, 587, 865, 887, 923, 1035
AhlI	ACTAGT	1 cut(s)	572
AluBI	AGCT	4 cut(s)	29, 609, 722, 943
AluI	AGCT	4 cut(s)	29, 609, 722, 943
Alw26I	GTCTC	2 cut(s)	181, 286
AlwI	GGATC	3 cut(s)	596, 609, 1021
AoxI	GGCC	1 cut(s)	660
ApoI	RAATTY	2 cut(s)	679, 732
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	284, 1008
AvaII	GGWCC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	679, 930
BccI	CCATC	2 cut(s)	403, 868
BciVI	GTATCC	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	181, 286
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	5 cut(s)	30, 258, 573, 606, 1008
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	865
BisI	GCNGC	2 cut(s)	660, 837
BlsI	GCNGC	2 cut(s)	661, 838
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	3 cut(s)	240, 603, 757
BmsI	GCATC	4 cut(s)	613, 720, 771, 971
BpiI	GAAGAC	2 cut(s)	679, 930
BpuEI	CTTGAG	2 cut(s)	395, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	1025
Bse1I	ACTGG	2 cut(s)	138, 462
BseGI	GGATG	2 cut(s)	883, 986
BseLI	CCNNNNNNNGG	1 cut(s)	1025
BseNI	ACTGG	2 cut(s)	138, 462
BshFI	GGCC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	1025
BsmAI	GTCTC	2 cut(s)	181, 286
BsnI	GGCC	1 cut(s)	662
Bsp143I	GATC	3 cut(s)	205, 601, 1013
BspACI	CCGC	2 cut(s)	659, 836
BspANI	GGCC	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	240, 603, 757
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	596, 609, 1021
BsrBI	CCGCTC	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	138, 462
BssMI	GATC	3 cut(s)	205, 601, 1013
Bst4CI	ACNGT	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	531, 760
BstDEI	CTNAG	1 cut(s)	1020
BstENI	CCTNNNNNAGG	1 cut(s)	1023
BstF5I	GGATG	2 cut(s)	883, 986
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	208, 604, 1016
BstMAI	GTCTC	2 cut(s)	181, 286
BstMBI	GATC	3 cut(s)	205, 601, 1013
BstSFI	CTRYAG	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	679, 930
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	865
BsuRI	GGCC	1 cut(s)	662
BtgZI	GCGATG	1 cut(s)	697
BtsCI	GGATG	2 cut(s)	883, 986
BtsIMutI	CAGTG	3 cut(s)	145, 355, 469
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	531, 760
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	9 cut(s)	55, 133, 548, 630, 636, 704, 752, 808, 968
CviJI	RGCY	9 cut(s)	29, 48, 241, 506, 609, 662, 722, 758, 943
CviKI_1	RGCY	9 cut(s)	29, 48, 241, 506, 609, 662, 722, 758, 943
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	1 cut(s)	1020
DpnI	GATC	3 cut(s)	207, 603, 1015
DpnII	GATC	3 cut(s)	205, 601, 1013
DraI	TTTAAA	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	216
EcoNI	CCTNNNNNAGG	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	748
FaeI	CATG	9 cut(s)	58, 136, 551, 633, 639, 707, 755, 811, 971
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	9 cut(s)	54, 132, 547, 629, 635, 703, 751, 807, 967
Fnu4HI	GCNGC	2 cut(s)	660, 837
FokI	GGATG	2 cut(s)	890, 993
Fsp4HI	GCNGC	2 cut(s)	660, 837
FspBI	CTAG	5 cut(s)	30, 258, 573, 606, 1008
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	2 cut(s)	660, 837
HaeIII	GGCC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	9 cut(s)	58, 136, 551, 633, 639, 707, 755, 811, 971
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	13, 385
HindII	GTYRAC	2 cut(s)	13, 385
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	3 cut(s)	70, 337, 544
HphI	GGTGA	2 cut(s)	284, 1008
Hpy166II	GTNNAC	5 cut(s)	13, 143, 253, 385, 457
Hpy188I	TCNGA	2 cut(s)	697, 859
Hpy188III	TCNNGA	3 cut(s)	105, 548, 920
Hpy8I	GTNNAC	5 cut(s)	13, 143, 253, 385, 457
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	8 cut(s)	58, 221, 235, 414, 449, 746, 762, 787
HpyF3I	CTNAG	1 cut(s)	1020
Hsp92II	CATG	9 cut(s)	58, 136, 551, 633, 639, 707, 755, 811, 971
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	205, 601, 1013
LmnI	GCTCC	2 cut(s)	238, 755
LpnPI	CCDG	5 cut(s)	82, 151, 221, 475, 772
LweI	GCATC	4 cut(s)	613, 720, 771, 971
MaeI	CTAG	5 cut(s)	30, 258, 573, 606, 1008
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	207, 603, 1015
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	3 cut(s)	205, 601, 1013
MboII	GAAGA	7 cut(s)	32, 215, 314, 393, 479, 679, 935
MfeI	CAATTG	3 cut(s)	216, 322, 342
MflI	RGATCY	1 cut(s)	601
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	292, 637, 827, 892, 1019
Mph1103I	ATGCAT	1 cut(s)	748
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	634
MspA1I	CMGCKG	1 cut(s)	836
MunI	CAATTG	3 cut(s)	216, 322, 342
NdeII	GATC	3 cut(s)	205, 601, 1013
NlaIII	CATG	9 cut(s)	58, 136, 551, 633, 639, 707, 755, 811, 971
NlaIV	GGNNCC	3 cut(s)	240, 603, 757
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	748
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	70, 544
PkrI	GCNGC	2 cut(s)	661, 838
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	240, 603, 757
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	2 cut(s)	660, 837
Sau3AI	GATC	3 cut(s)	205, 601, 1013
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	346
SfaNI	GCATC	4 cut(s)	613, 720, 771, 971
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	374, 818
SmoI	CTYRAG	2 cut(s)	374, 818
SpeI	ACTAGT	1 cut(s)	572
SsiI	CCGC	2 cut(s)	659, 836
SspMI	CTAG	5 cut(s)	30, 258, 573, 606, 1008
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	946
TauI	GCSGC	2 cut(s)	662, 839
TfiI	GAWTC	2 cut(s)	70, 544
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	3 cut(s)	145, 355, 469
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	33, 679, 758, 824, 941
TspRI	CASTG	3 cut(s)	145, 355, 469
VpaK11BI	GGWCC	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	1023
XapI	RAATTY	2 cut(s)	679, 732
XcmI	CCANNNNNNNNNTGG	2 cut(s)	321, 670
XspI	CTAG	5 cut(s)	30, 258, 573, 606, 1008
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.