Rmu_sc0000558.1_g000005

Cyclin-dependent kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000558.1
OG0002441
Physical Location & Seq
Reverse (-)
18993 .. 21086
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000558.1_g000005.1.cds

Sequence Viewer

Length: 516 bp
ctgcgaagcgacgccaacaagcaggctcaggctcaggctcaggctcctcggggttgctgcgcggggggcagggccgtcaattcgaggttgagtgtgggctcgccggcggatttgggctgggatgagaggaacgagaaggacggggaggggtgttttggtaatgttgaaagtgaagcagagtatgccgacgatgttgaagcttcatttggggaaaacaacttggattttgatggcagagataggagcacccgagaaagcacgccatgcagcttgataaggaacccggactctgttggaacccctggttctacaacaaggcggtcaagttctattgcaaataaccaaagagttagaaatgatacccaaagaaccattccaactgcacttgatatggatgagttctttgcccaagctgagcagcagcaacagaaactctttatggagaagtacaactttgatattaccagtgatatgccccttccaggaaggtatgaatgggagcaagtgattccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDI

Protein Analysis

171

Amino Acids

18.96

Weight (kDa)

4.54

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AciI CCGC 3 cut(s) 62, 107, 319
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 2 cut(s) 167, 197
AjnI CCWGG 2 cut(s) 301, 481
AjuI GAANNNNNNNTTGG 4 cut(s) 189, 221, 357, 389
AluBI AGCT 3 cut(s) 200, 270, 413
AluI AGCT 3 cut(s) 200, 270, 413
Alw21I GWGCWC 1 cut(s) 248
Ama87I CYCGRG 2 cut(s) 48, 249
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 4 cut(s) 57, 267, 418, 421
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 284
AvaI CYCGRG 2 cut(s) 48, 249
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 4 cut(s) 44, 279, 430, 433
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 303, 483
BcnI CCSGG 1 cut(s) 284
BisI GCNGC 4 cut(s) 58, 268, 419, 422
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 4 cut(s) 59, 269, 420, 423
Bme1390I CCNGG 3 cut(s) 284, 303, 483
BmeT110I CYCGRG 2 cut(s) 48, 249
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 45, 281, 298
BmrFI CCNGG 3 cut(s) 284, 303, 483
Bpu10I CCTNAGC 3 cut(s) 27, 33, 39
Bpu1102I GCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 47, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 465
BseBI CCWGG 2 cut(s) 303, 483
BseDI CCNNGG 2 cut(s) 47, 301
BseGI GGATG 2 cut(s) 127, 400
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 4 cut(s) 41, 47, 53, 405
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 4 cut(s) 44, 279, 430, 433
BseYI CCCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 248
BsiHKCI CYCGRG 2 cut(s) 48, 249
BsiSI CCGG 2 cut(s) 104, 284
BslI CCNNNNNNNGG 1 cut(s) 482
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 2 cut(s) 48, 249
Bsp1286I GDGCHC 2 cut(s) 101, 248
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 3 cut(s) 62, 107, 319
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 4 cut(s) 40, 46, 52, 406
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 45, 281, 298
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 47, 301
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 303, 483
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 2 cut(s) 182, 264
BstC8I GCNNGC 4 cut(s) 24, 101, 105, 260
BstDEI CTNAG 4 cut(s) 27, 33, 39, 414
BstF5I GGATG 2 cut(s) 127, 400
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 66, 182, 264
BstNI CCWGG 2 cut(s) 303, 483
BstSCI CCNGG 3 cut(s) 282, 301, 481
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 44, 279, 430, 433
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 127, 400
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 4 cut(s) 24, 101, 105, 260
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 448
CviAII CATG 1 cut(s) 264
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 4 cut(s) 27, 33, 39, 414
EciI GGCGGA 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 48, 249
EcoRII CCWGG 2 cut(s) 301, 481
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 183, 265, 392, 440, 473, 492
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 1 cut(s) 263
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 58, 268, 419, 422
FokI GGATG 2 cut(s) 134, 407
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 58, 268, 419, 422
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 58, 268, 419, 422
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 74
HapII CCGG 2 cut(s) 104, 284
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 2 cut(s) 287, 508
HpaII CCGG 2 cut(s) 104, 284
Hpy99I CGWCG 2 cut(s) 14, 191
HpyAV CCTTC 3 cut(s) 130, 480, 488
HpyCH4V TGCA 3 cut(s) 267, 335, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 182, 264
HpyF3I CTNAG 4 cut(s) 27, 33, 39, 414
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 60
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 49, 243, 499
Lsp1109I GCAGC 4 cut(s) 44, 279, 430, 433
MhlI GDGCHC 2 cut(s) 101, 248
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 274, 401
MnlI CCTC 4 cut(s) 57, 78, 120, 139
MreI CGCCGGCG 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 103
MspI CCGG 2 cut(s) 104, 284
MspR9I CCNGG 3 cut(s) 284, 303, 483
MvaI CCWGG 2 cut(s) 303, 483
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 66, 182, 264
NaeI GCCGGC 1 cut(s) 105
NciI CCSGG 1 cut(s) 284
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 3 cut(s) 45, 281, 298
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 508
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 4 cut(s) 59, 269, 420, 423
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 301, 481
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 2 cut(s) 301, 481
PspN4I GGNNCC 3 cut(s) 45, 281, 298
PspPI GGNCC 1 cut(s) 72
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SatI GCNGC 4 cut(s) 58, 268, 419, 422
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 284, 303, 483
SduI GDGCHC 2 cut(s) 101, 248
SetI ASST 5 cut(s) 89, 202, 272, 415, 491
SgrAI CRCCGGYG 1 cut(s) 103
Sse9I AATT 1 cut(s) 79
SsiI CCGC 3 cut(s) 62, 107, 319
StyD4I CCNGG 3 cut(s) 282, 301, 481
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 508
TscAI CASTG 1 cut(s) 472
TseI GCWGC 4 cut(s) 57, 267, 418, 421
TspDTI ATGAA 2 cut(s) 192, 507
TspRI CASTG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.