Rw6G024110

Cyclin-dependent kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002441
Physical Location & Seq
Reverse (-)
46903716 .. 46906687
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024110.1

Sequence Viewer

Length: 723 bp
ATGGGAAAGTACATGAAGAAATCCAAGATCACAGGCGACATCGCCGTCATGGAGGTTTCAATTTCACCTCAGTCCTCCCTCGGCGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAGAAGCTCCACCAGCAGCAGCAGCAGCAATCGCCCGACTCCGACTCCTCGTCTCTCTACTATCTCCAGCTCCGAAGCCGCCGCCTTGAGAAGCCGCCGCTGCGAAGCGACGCCAACAAGCAGGCTCAGGCTCAGGCTCCTCGGGATTGCTGCGCGGGGGGCAGGGCCGTCAATTCGAGGTTGAGTGTGGGCTCGTCGGCGGATTTGGGCTGGGATGAGAGGAACGAGAAGGACGGGGAGGGGTGTTTTGGTAATGTTGAAAGTGAAGCAGAGTATGCCGACGATGTTGAGGCTTCATTTGGGGAAAACAACTTGGATTTTGATGGCAGAGATAGGAGCACCCGAGAAAGCACGCCATGCAGCTTGATAAGGAACCCAGACTCTGTTGGAACCCCTGGTTCTACAACAAGGCGGTCAAGTTCTATTGCAAATAACCAAAGAGTTAGAAATGATGCCCAAAGAACCATTCCAACTGCACTTGATATGGACGAGTTCTTTGCCCAAGCTGAGCAGCAGCAACAGAAACTCTTTATGGAGAAGTACAACTTTGATATTACCAGTGATATGCCCCTTCCAGGAAGGTATGAATGGGAGCAAGTGATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDI

Protein Analysis

240

Amino Acids

26.81

Weight (kDa)

5.27

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDI PF02234 193 - 238 3.3e-18 Cyclin-dependent kinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccII CGCG 1 cut(s) 269
AciI CCGC 7 cut(s) 193, 196, 209, 212, 269, 314, 526
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 11, 656
AfiI CCNNNNNNNGG 1 cut(s) 689
AgsI TTSAA 2 cut(s) 60, 374
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 508, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 4 cut(s) 121, 184, 477, 620
AluI AGCT 4 cut(s) 121, 184, 477, 620
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 2 cut(s) 255, 456
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 9 cut(s) 130, 133, 136, 139, 214, 264, 474, 625, 628
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 255, 456
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 9 cut(s) 142, 145, 148, 151, 201, 251, 486, 637, 640
BccI CCATC 1 cut(s) 431
BceAI ACGGC 2 cut(s) 29, 266
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 2 cut(s) 510, 690
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 107
BlpI GCTNAGC 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 510, 690
BmeRI GACNNNNNGTC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 255, 456
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 252, 488, 505
BmrFI CCNGG 2 cut(s) 510, 690
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 2 cut(s) 98, 164
Bpu10I CCTNAGC 2 cut(s) 240, 246
Bpu1102I GCTNAGC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 79, 254, 508
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 689
Bse1I ACTGG 1 cut(s) 672
BseBI CCWGG 2 cut(s) 510, 690
BseDI CCNNGG 3 cut(s) 79, 254, 508
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 689
BseMII CTCAG 4 cut(s) 83, 254, 260, 612
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 2 cut(s) 151, 243
BseXI GCAGC 9 cut(s) 142, 145, 148, 151, 201, 251, 486, 637, 640
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 2 cut(s) 255, 456
BslI CCNNNNNNNGG 1 cut(s) 689
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 2 cut(s) 255, 456
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 308, 455
Bsp143I GATC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 7 cut(s) 193, 196, 209, 212, 269, 314, 526
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 4 cut(s) 82, 253, 259, 613
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 252, 488, 505
BspT104I TTCGAA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 3 cut(s) 79, 254, 508
BssMI GATC 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 510, 690
BstACI GRCGYC 1 cut(s) 225
BstAPI GCANNNNNTGC 2 cut(s) 389, 471
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 237, 467
BstDEI CTNAG 4 cut(s) 69, 240, 246, 621
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 8 cut(s) 127, 136, 139, 145, 214, 273, 389, 471
BstNI CCWGG 2 cut(s) 510, 690
BstSCI CCNGG 2 cut(s) 508, 688
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 9 cut(s) 142, 145, 148, 151, 201, 251, 486, 637, 640
BsuRI GGCC 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 237, 467
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 10, 655
CviAII CATG 3 cut(s) 13, 49, 471
CviQI GTAC 2 cut(s) 10, 655
DdeI CTNAG 4 cut(s) 69, 240, 246, 621
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
DrdI GACNNNNNNGTC 1 cut(s) 44
DriI GACNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 308
Eco88I CYCGRG 2 cut(s) 255, 456
EcoRII CCWGG 2 cut(s) 508, 688
EcoT38I GRGCYC 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 16, 52, 474
FaiI YATR 8 cut(s) 14, 50, 390, 472, 599, 647, 680, 699
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FatI CATG 3 cut(s) 12, 48, 470
FauI CCCGC 1 cut(s) 262
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 2 cut(s) 98, 164
HaeIII GGCC 1 cut(s) 281
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 3 cut(s) 16, 52, 474
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 4 cut(s) 152, 158, 494, 715
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 157, 188
Hpy188III TCNNGA 2 cut(s) 115, 257
Hpy99I CGWCG 3 cut(s) 227, 313, 398
HpyAV CCTTC 3 cut(s) 337, 687, 695
HpyCH4V TGCA 3 cut(s) 474, 542, 590
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 136, 139, 145, 214, 273, 389, 471
HpyF3I CTNAG 4 cut(s) 69, 240, 246, 621
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 16, 52, 474
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 5 cut(s) 126, 189, 256, 450, 706
Lsp1109I GCAGC 9 cut(s) 142, 145, 148, 151, 201, 251, 486, 637, 640
LweI GCATC 1 cut(s) 556
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 308, 455
MluCI AATT 2 cut(s) 60, 286
MlyI GAGTC 3 cut(s) 146, 152, 488
MmeI TCCRAC 3 cut(s) 180, 481, 608
MspA1I CMGCKG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 510, 690
MvaI CCWGG 2 cut(s) 510, 690
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 8 cut(s) 127, 136, 139, 145, 214, 273, 389, 471
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 16, 52, 474
NlaIV GGNNCC 3 cut(s) 252, 488, 505
NmeAIII GCCGAG 1 cut(s) 60
NspV TTCGAA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 688
PleI GAGTC 3 cut(s) 146, 152, 488
PpsI GAGTC 3 cut(s) 146, 152, 488
Psp6I CCWGG 2 cut(s) 508, 688
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 2 cut(s) 508, 688
PspN4I GGNNCC 3 cut(s) 252, 488, 505
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 11, 656
RsaNI GTAC 2 cut(s) 10, 655
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 3 cut(s) 146, 152, 488
ScrFI CCNGG 2 cut(s) 510, 690
SduI GDGCHC 2 cut(s) 308, 455
SetI ASST 8 cut(s) 57, 70, 123, 186, 296, 479, 622, 698
SfaNI GCATC 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 60, 286
SsiI CCGC 7 cut(s) 193, 196, 209, 212, 269, 314, 526
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 508, 688
TaqI TCGA 2 cut(s) 88, 290
TasI AATT 2 cut(s) 60, 286
TatI WGTACW 2 cut(s) 9, 654
TauI GCSGC 4 cut(s) 195, 198, 211, 214
TfiI GAWTC 1 cut(s) 715
TscAI CASTG 1 cut(s) 679
TseI GCWGC 9 cut(s) 130, 133, 136, 139, 214, 264, 474, 625, 628
TspDTI ATGAA 3 cut(s) 29, 399, 714
TspRI CASTG 1 cut(s) 679
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.