Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

1159177 .. 1162498

Gene Structure 3322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGCAAGTACATGAGGAAGACGAAAGCCACTGGTGACGTGGCAGTGATGGAAGTCTCGCAGGCGGCCTCTCTCGGGGTTCGCACCCGAGCCAAAACCCTAGCTCTCCAGCGCTCCACCACCTCCTCCGCCTCCTATCTCCAGCTCCGCAGCCGCCGCCTCCAGAAGCACCCGCCGATTCTCCCGCCTCGAGAGCCCCGCAGGCAGAAGCACCACCACCACCACCACCACCACACTCCCAAACAGCCAACGCCGGAAAACCCTAACCCACCCGCCGACGAGGGCTCGCCGGAGGAGGAGGAGGCGCCGGAAGAGGAGCAAAATAATAATGGCGAAAATGGTGATTTCGGTGACGCTGAAGAAGCTTCGTTCGGAGAGAATGTGCCCGAGTTTGAAGGTAGAGAGAGAACCACACGGGAATCTACACCTTGCAGCTTGATAAGGGATCCAGACACTATCAGAACCCCTGGTTCTACTACTAGGCCTACTAATTCAGCTGATGCTAACCGGAGAATACAGAACTCATCACAGAGACACATACCAACAGCACATGACATGGATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAGAAGCAATTCATTGACAAATACAACTTTGACCCTGTGAATGATAAGCCGCTACCAGGACGTTATGAATGGGAGAAATTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

226

Amino Acids

25.67

Weight (kDa)

5.9

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	178 - 224	5.3e-20	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AclWI	GGATC	3 cut(s)	440, 453, 668
AcuI	CTGAAG	2 cut(s)	378, 600
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	75, 647
AgsI	TTSAA	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	466, 646
AluBI	AGCT	5 cut(s)	104, 145, 365, 435, 497
AluI	AGCT	5 cut(s)	104, 145, 365, 435, 497
Alw26I	GTCTC	2 cut(s)	61, 526
AlwI	GGATC	3 cut(s)	440, 453, 668
Ama87I	CYCGRG	4 cut(s)	74, 87, 189, 386
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	66, 482
ApeKI	GCWGC	3 cut(s)	150, 432, 589
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	114, 307
AsuHPI	GGTGA	3 cut(s)	47, 353, 362
AvaI	CYCGRG	4 cut(s)	74, 87, 189, 386
BaeGI	GKGCMC	1 cut(s)	387
BamHI	GGATCC	2 cut(s)	445, 673
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	198, 287
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	162, 444, 601
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	468, 648
BcoDI	GTCTC	2 cut(s)	61, 526
BfaI	CTAG	2 cut(s)	101, 480
BfoI	RGCGCY	2 cut(s)	115, 308
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	7 cut(s)	66, 151, 154, 157, 433, 590, 641
BlsI	GCNGC	7 cut(s)	67, 152, 155, 158, 434, 591, 642
Bme1390I	CCNGG	2 cut(s)	468, 648
BmeT110I	CYCGRG	4 cut(s)	74, 87, 189, 386
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	306, 447, 675
BmrFI	CCNGG	2 cut(s)	468, 648
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	3 cut(s)	92, 125, 146
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 647
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	468, 648
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	75, 647
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	5 cut(s)	115, 308, 311, 314, 329
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	162, 444, 601
BshFI	GGCC	2 cut(s)	68, 484
BshNI	GGYRCC	1 cut(s)	304
BsiHKCI	CYCGRG	4 cut(s)	74, 87, 189, 386
BsiSI	CCGG	4 cut(s)	254, 290, 308, 508
BslI	CCNNNNNNNGG	2 cut(s)	75, 647
BsmAI	GTCTC	2 cut(s)	61, 526
BsnI	GGCC	2 cut(s)	68, 484
BsoBI	CYCGRG	4 cut(s)	74, 87, 189, 386
Bsp1286I	GDGCHC	3 cut(s)	198, 287, 387
Bsp143I	GATC	2 cut(s)	445, 673
BspANI	GGCC	2 cut(s)	68, 484
BspLI	GGNNCC	3 cut(s)	306, 447, 675
BspPI	GGATC	3 cut(s)	440, 453, 668
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	445, 673
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	468, 648
Bst6I	CTCTTC	2 cut(s)	306, 579
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	63, 203, 287
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	2 cut(s)	115, 308
BstHHI	GCGC	2 cut(s)	114, 307
BstKTI	GATC	2 cut(s)	448, 676
BstMAI	GTCTC	2 cut(s)	61, 526
BstMBI	GATC	2 cut(s)	445, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 362, 595
BstNI	CCWGG	2 cut(s)	468, 648
BstSCI	CCNGG	2 cut(s)	466, 646
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	162, 444, 601
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	445, 673
BstYI	RGATCY	2 cut(s)	445, 673
BsuRI	GGCC	2 cut(s)	68, 484
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	30, 51
Cac8I	GCNNGC	3 cut(s)	63, 203, 287
CfoI	GCGC	2 cut(s)	114, 307
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	13, 551, 556
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	678
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	2 cut(s)	447, 675
DpnII	GATC	2 cut(s)	445, 673
Eam1104I	CTCTTC	2 cut(s)	306, 579
EarI	CTCTTC	2 cut(s)	306, 579
EciI	GGCGGA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	198, 287
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	378, 600
Eco88I	CYCGRG	4 cut(s)	74, 87, 189, 386
EcoRII	CCWGG	2 cut(s)	466, 646
EcoT38I	GRGCYC	2 cut(s)	198, 287
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
FaeI	CATG	3 cut(s)	16, 554, 559
FaiI	YATR	5 cut(s)	14, 539, 552, 557, 657
FatI	CATG	3 cut(s)	12, 550, 555
FauI	CCCGC	4 cut(s)	180, 192, 206, 280
Fnu4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 433, 590, 641
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	2 cut(s)	198, 287
Fsp4HI	GCNGC	7 cut(s)	66, 151, 154, 157, 433, 590, 641
FspBI	CTAG	2 cut(s)	101, 480
GlaI	GCGC	2 cut(s)	113, 306
GluI	GCNGC	7 cut(s)	66, 151, 154, 157, 433, 590, 641
GsuI	CTGGAG	3 cut(s)	92, 125, 146
HaeII	RGCGCY	2 cut(s)	115, 308
HaeIII	GGCC	2 cut(s)	68, 484
HapII	CCGG	4 cut(s)	254, 290, 308, 508
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	114, 307
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	16, 554, 559
Hin6I	GCGC	2 cut(s)	112, 305
HinP1I	GCGC	2 cut(s)	112, 305
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	178, 419
HpaII	CCGG	4 cut(s)	254, 290, 308, 508
HphI	GGTGA	3 cut(s)	47, 353, 362
Hpy188I	TCNGA	2 cut(s)	374, 461
Hpy188III	TCNNGA	3 cut(s)	163, 191, 449
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	389
HpyCH4IV	ACGT	2 cut(s)	39, 652
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 362, 595
HpyF3I	CTNAG	1 cut(s)	678
HpySE526I	ACGT	2 cut(s)	39, 652
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	16, 554, 559
HspAI	GCGC	2 cut(s)	112, 305
KasI	GGCGCC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	445, 673
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	3 cut(s)	119, 150, 316
Lsp1109I	GCAGC	3 cut(s)	162, 444, 601
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	101, 480
MaeII	ACGT	2 cut(s)	39, 652
MaeIII	GTNAC	2 cut(s)	35, 350
MalI	GATC	2 cut(s)	447, 675
MboI	GATC	2 cut(s)	445, 673
MboII	GAAGA	5 cut(s)	31, 323, 371, 593, 596
MflI	RGATCY	2 cut(s)	445, 673
MhlI	GDGCHC	3 cut(s)	198, 287, 387
MluCI	AATT	3 cut(s)	490, 599, 668
Mly113I	GGCGCC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	4 cut(s)	254, 290, 308, 508
MspR9I	CCNGG	2 cut(s)	468, 648
MvaI	CCWGG	2 cut(s)	468, 648
MwoI	GCNNNNNNNGC	5 cut(s)	156, 193, 202, 362, 595
NarI	GGCGCC	1 cut(s)	305
NdeII	GATC	2 cut(s)	445, 673
NlaIII	CATG	3 cut(s)	16, 554, 559
NlaIV	GGNNCC	3 cut(s)	306, 447, 675
NmuCI	GTSAC	2 cut(s)	35, 350
PaeR7I	CTCGAG	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	178, 419
PkrI	GCNGC	7 cut(s)	67, 152, 155, 158, 434, 591, 642
PluTI	GGCGCC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	466, 646
PspGI	CCWGG	2 cut(s)	466, 646
PspN4I	GGNNCC	3 cut(s)	306, 447, 675
PsuI	RGATCY	2 cut(s)	445, 673
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	579
SatI	GCNGC	7 cut(s)	66, 151, 154, 157, 433, 590, 641
Sau3AI	GATC	2 cut(s)	445, 673
ScrFI	CCNGG	2 cut(s)	468, 648
SduI	GDGCHC	3 cut(s)	198, 287, 387
SfaNI	GCATC	1 cut(s)	490
SfoI	GGCGCC	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	490, 599, 668
SseBI	AGGCCT	1 cut(s)	484
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	101, 480
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	466, 646
TaiI	ACGT	2 cut(s)	42, 655
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	490, 599, 668
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	4 cut(s)	68, 156, 159, 643
TfiI	GAWTC	2 cut(s)	178, 419
TscAI	CASTG	2 cut(s)	37, 51
TseFI	GTSAC	2 cut(s)	35, 350
TseI	GCWGC	3 cut(s)	150, 432, 589
Tsp45I	GTSAC	2 cut(s)	35, 350
TspDTI	ATGAA	2 cut(s)	592, 672
TspRI	CASTG	2 cut(s)	37, 51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	2 cut(s)	101, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.