Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

19117834 .. 19121361

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G203300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGAAGTACATGAAGAAGTCTAAAATCTCAGGTGACGTTGCCGTGATGGAGGTTTCCGTTTCACCGCAGTCCTCTCTCGGCGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAAAAACTTCAGCAACAACAGAAGCAAGAGAACCAGAACCAATCGCCCTCTGTGGAACCTGACCCAGATACCTCCTCCTTGTACTATCTCCAGCTCAGGAGTCGCCGTCTCGAGAAACCCCCATTGCGAAACGACGTCGCCAAGAAGCAGAGCCAGAGCGAAGCTGAGCCCTTGGAGAAGCCCAGAGGGTGTTGTGGAGAAAGCCGAAGAAGGGCCATGGATTCGAGGCCCAATTCGAGGTTGAGTGTGGGCTCGTCGTTGGACTCTGGCTGGGCTGAGTCCGTTGAGAGAAAGGAGGAGGAGGGGGAAGGGTGTTTTGGTAATTTTGGAAATGAAGCCGAGTATGGTAGCGATTTGGGCGTTGAGGCGTCATTTGGGGAAAACAACTTGGAGTTTGAAGCCAGAGACAGGAGCACCAGAGAAAGCACACCATGCAGCTTCATAAGGGAGTCAAACACTATTGGAACCCCCGGTTCCACCACAAGGCGGACAAGTTCTGTTGCAACTCACCGGAGGGTTAGAAATGATATGCAAAGAAATATCCCAACGACACTTGAGATGGAGGAGTTCTTTGCCCAACACGAGCAGGAGCAACAGAGAATTTTCCTTGAGAAATACAACTTTGACATCACCAGTGATTTGCCCCTTCCCGGAAGATATGAATGGGAGCAAGTGATTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

266

Amino Acids

30.07

Weight (kDa)

5.72

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AciI	CCGC	2 cut(s)	68, 601
AcsI	RAATTY	1 cut(s)	714
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	249, 482
AfaI	GTAC	2 cut(s)	11, 197
AfiI	CCNNNNNNNGG	6 cut(s)	325, 351, 522, 597, 600, 764
AgsI	TTSAA	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	3 cut(s)	208, 278, 552
AluI	AGCT	3 cut(s)	208, 278, 552
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	2 cut(s)	227, 513
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	327, 341
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	714
AspS9I	GGNCC	2 cut(s)	327, 342
AsuC2I	CCSGG	2 cut(s)	585, 765
AsuHPI	GGTGA	4 cut(s)	47, 57, 614, 736
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	285, 368
BauI	CACGAG	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	2 cut(s)	43, 667
BceAI	ACGGC	2 cut(s)	29, 204
BcnI	CCSGG	2 cut(s)	585, 765
BcoDI	GTCTC	2 cut(s)	227, 513
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	585, 765
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	327, 342
BmiI	GGNNCC	3 cut(s)	171, 580, 589
BmrFI	CCNGG	2 cut(s)	585, 765
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	689, 743
BpuMI	CCSGG	2 cut(s)	585, 765
BsaHI	GRCGYC	2 cut(s)	249, 482
BsaJI	CCNNGG	3 cut(s)	285, 330, 583
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	6 cut(s)	325, 351, 522, 597, 600, 764
Bse1I	ACTGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	285, 330, 583
BseLI	CCNNNNNNNGG	6 cut(s)	325, 351, 522, 597, 600, 764
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	4 cut(s)	45, 223, 270, 381
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	4 cut(s)	178, 425, 428, 692
BseXI	GCAGC	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	329, 343
BsiHKAI	GWGCWC	1 cut(s)	530
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	585, 625, 765
BslI	CCNNNNNNNGG	6 cut(s)	325, 351, 522, 597, 600, 764
BsmAI	GTCTC	2 cut(s)	227, 513
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	329, 343
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	3 cut(s)	285, 368, 530
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	2 cut(s)	68, 601
BspANI	GGCC	2 cut(s)	329, 343
BspCNI	CTCAG	4 cut(s)	44, 222, 271, 382
BspLI	GGNNCC	3 cut(s)	171, 580, 589
BspT104I	TTCGAA	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	3 cut(s)	285, 330, 583
BssNI	GRCGYC	2 cut(s)	249, 482
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	285, 330
Bst2BI	CACGAG	1 cut(s)	695
BstACI	GRCGYC	2 cut(s)	249, 482
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	31, 209, 279, 390
BstDSI	CCRYGG	1 cut(s)	330
BstMAI	GTCTC	2 cut(s)	227, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 546
BstSCI	CCNGG	2 cut(s)	583, 763
BstV1I	GCAGC	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	329, 343
BtgI	CCRYGG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	327, 342
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	10, 196
CviAII	CATG	3 cut(s)	13, 331, 546
CviQI	GTAC	2 cut(s)	10, 196
DdeI	CTNAG	4 cut(s)	31, 209, 279, 390
EciI	GGCGGA	1 cut(s)	616
Eco130I	CCWWGG	2 cut(s)	285, 330
Eco24I	GRGCYC	2 cut(s)	285, 368
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	285, 330
EcoT38I	GRGCYC	2 cut(s)	285, 368
ErhI	CCWWGG	2 cut(s)	285, 330
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	16, 334, 549
FaiI	YATR	7 cut(s)	14, 332, 459, 547, 557, 644, 774
FatI	CATG	3 cut(s)	12, 330, 545
Fnu4HI	GCNGC	1 cut(s)	550
FriOI	GRGCYC	2 cut(s)	285, 368
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	550
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	329, 343
HapII	CCGG	3 cut(s)	585, 625, 765
HgaI	GACGC	1 cut(s)	471
Hin1I	GRCGYC	2 cut(s)	249, 482
Hin1II	CATG	3 cut(s)	16, 334, 549
HinfI	GANTC	6 cut(s)	214, 335, 377, 392, 563, 790
HpaII	CCGG	3 cut(s)	585, 625, 765
HphI	GGTGA	4 cut(s)	47, 57, 614, 736
Hpy188III	TCNNGA	3 cut(s)	211, 224, 226
Hpy99I	CGWCG	3 cut(s)	251, 254, 373
HpyAV	CCTTC	3 cut(s)	318, 416, 770
HpyCH4IV	ACGT	2 cut(s)	39, 249
HpyCH4V	TGCA	3 cut(s)	549, 617, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 546
HpyF3I	CTNAG	4 cut(s)	31, 209, 279, 390
HpySE526I	ACGT	2 cut(s)	39, 249
Hsp92I	GRCGYC	2 cut(s)	249, 482
Hsp92II	CATG	3 cut(s)	16, 334, 549
LmnI	GCTCC	3 cut(s)	525, 703, 781
Lsp1109I	GCAGC	1 cut(s)	561
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	39, 249
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	28, 333, 780
MhlI	GDGCHC	3 cut(s)	285, 368, 530
MluCI	AATT	3 cut(s)	346, 436, 714
MlyI	GAGTC	4 cut(s)	223, 371, 401, 572
MmeI	TCCRAC	1 cut(s)	354
MspI	CCGG	3 cut(s)	585, 625, 765
MspR9I	CCNGG	2 cut(s)	585, 765
MwoI	GCNNNNNNNGC	2 cut(s)	471, 546
NciI	CCSGG	2 cut(s)	585, 765
NcoI	CCATGG	1 cut(s)	330
NlaIII	CATG	3 cut(s)	16, 334, 549
NlaIV	GGNNCC	3 cut(s)	171, 580, 589
NmeAIII	GCCGAG	2 cut(s)	60, 478
NmuCI	GTSAC	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	335, 790
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	1 cut(s)	551
PleI	GAGTC	4 cut(s)	222, 371, 400, 571
PpsI	GAGTC	4 cut(s)	222, 371, 400, 571
PspFI	CCCAGC	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	171, 580, 589
PspPI	GGNCC	2 cut(s)	327, 342
RsaI	GTAC	2 cut(s)	11, 197
RsaNI	GTAC	2 cut(s)	10, 196
SatI	GCNGC	1 cut(s)	550
Sau96I	GGNCC	2 cut(s)	327, 342
SchI	GAGTC	4 cut(s)	223, 371, 401, 572
ScrFI	CCNGG	2 cut(s)	585, 765
SduI	GDGCHC	3 cut(s)	285, 368, 530
Sfr274I	CTCGAG	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	224, 668, 722
SmoI	CTYRAG	3 cut(s)	224, 668, 722
Sse9I	AATT	3 cut(s)	346, 436, 714
SsiI	CCGC	2 cut(s)	68, 601
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	583, 763
StyI	CCWWGG	2 cut(s)	285, 330
TaiI	ACGT	2 cut(s)	42, 252
TaqI	TCGA	4 cut(s)	88, 225, 338, 350
TasI	AATT	3 cut(s)	346, 436, 714
TatI	WGTACW	2 cut(s)	9, 195
TfiI	GAWTC	2 cut(s)	335, 790
TscAI	CASTG	1 cut(s)	754
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	4 cut(s)	29, 462, 544, 789
TspGWI	ACGGA	2 cut(s)	49, 385
TspRI	CASTG	1 cut(s)	754
XapI	RAATTY	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.