Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Forward (+)

571257 .. 574260

Gene Structure 3004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGCAAGTACATGAGGAAGTCCAAGCCCGCCGGTCACGTGGCAGTCATGGAAGTCTCCCAGGCCGGGGTTCGCACCCGCGCCAAAACCCTAGCTCTCCAGCGCAGCTCCTCCTCCTATCTCCAGCTCCGCAGCCGCCGCCTCGAGAAGCCTCCTATTCTCGTCCCCAAGAGACACCACAACAAGCACCACCATACTCCCAAGCAGCAGCAGCCCTCCGCCGCCGAGCCTTCCCCGACGAAACCCGAAGACGGCGGCGAGGAATTGTCGCCGCCCAAGGAGGAGGAGCAGAAGAAGAATAGTGAGCTCAATGACGGCGGCGAAGACGGTGGTGCTGAAGAAGCTTCGTTCGGAGAGAATGTGCTCGAGTTTGAAGGTAGAGAGAGAACCACTAGGGAATCCACGCCTTGCAGCTTGATAAGGGATCCAGACACCATCAGAACCCCTGGTTCTACAACAAGGCCTACTAATTCAGCTGATACTAACCGGAGAATACAGAACTCATCACAGAGACACATACCAACAGCACATGACATGGATGAGTTCTTTGCTGGTGCTGAAGAAGAGCAGCAGAAGCAATTCATTGACAAATACAACTTTGACCCTGTGAATGATAAGCCGCTACCAGGACGTTACGAATGGGAGAAATTGGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

220

Amino Acids

24.75

Weight (kDa)

6.47

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	171 - 217	5e-20	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	3 cut(s)	419, 432, 647
AcuI	CTGAAG	2 cut(s)	357, 579
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 251, 626
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	3 cut(s)	60, 445, 625
AluBI	AGCT	7 cut(s)	95, 108, 127, 307, 344, 414, 476
AluI	AGCT	7 cut(s)	95, 108, 127, 307, 344, 414, 476
Alw21I	GWGCWC	2 cut(s)	309, 366
Alw26I	GTCTC	3 cut(s)	61, 166, 505
AlwI	GGATC	3 cut(s)	419, 432, 647
Ama87I	CYCGRG	2 cut(s)	143, 365
AoxI	GGCC	2 cut(s)	63, 461
ApeKI	GCWGC	7 cut(s)	105, 132, 205, 208, 211, 411, 568
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	83, 105
AsuC2I	CCSGG	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	143, 365
BamHI	GGATCC	2 cut(s)	424, 652
BanII	GRGCYC	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	255, 330
Bbv12I	GWGCWC	2 cut(s)	309, 366
BbvI	GCAGC	7 cut(s)	117, 144, 217, 220, 223, 423, 580
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	268, 331
BciT130I	CCWGG	3 cut(s)	62, 447, 627
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	61, 166, 505
BfaI	CTAG	2 cut(s)	92, 393
Bme1390I	CCNGG	4 cut(s)	62, 67, 447, 627
BmeT110I	CYCGRG	2 cut(s)	143, 365
BmiI	GGNNCC	2 cut(s)	426, 654
BmrFI	CCNGG	4 cut(s)	62, 67, 447, 627
BpiI	GAAGAC	2 cut(s)	255, 330
BpmI	CTGGAG	2 cut(s)	83, 107
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	4 cut(s)	60, 66, 276, 445
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 251, 626
Bse118I	RCCGGY	1 cut(s)	32
BseBI	CCWGG	3 cut(s)	62, 447, 627
BseDI	CCNNGG	4 cut(s)	60, 66, 276, 445
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 251, 626
BseRI	GAGGAG	4 cut(s)	100, 103, 296, 299
BseXI	GCAGC	7 cut(s)	117, 144, 217, 220, 223, 423, 580
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	65, 463
BsiHKAI	GWGCWC	2 cut(s)	309, 366
BsiHKCI	CYCGRG	2 cut(s)	143, 365
BsiSI	CCGG	3 cut(s)	33, 66, 487
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 251, 626
BsmAI	GTCTC	3 cut(s)	61, 166, 505
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	65, 463
BsoBI	CYCGRG	2 cut(s)	143, 365
Bsp1286I	GDGCHC	2 cut(s)	309, 366
Bsp143I	GATC	2 cut(s)	424, 652
BspANI	GGCC	2 cut(s)	65, 463
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	426, 654
BspPI	GGATC	3 cut(s)	419, 432, 647
BspQI	GCTCTTC	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	4 cut(s)	60, 66, 276, 445
BssMI	GATC	2 cut(s)	424, 652
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	3 cut(s)	62, 447, 627
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	83, 105
BstKTI	GATC	2 cut(s)	427, 655
BstMAI	GTCTC	3 cut(s)	61, 166, 505
BstMBI	GATC	2 cut(s)	424, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 211, 341, 574
BstNI	CCWGG	3 cut(s)	62, 447, 627
BstSCI	CCNGG	4 cut(s)	60, 65, 445, 625
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	7 cut(s)	117, 144, 217, 220, 223, 423, 580
BstV2I	GAAGAC	2 cut(s)	255, 330
BstX2I	RGATCY	2 cut(s)	424, 652
BstYI	RGATCY	2 cut(s)	424, 652
BsuRI	GGCC	2 cut(s)	65, 463
BtsCI	GGATG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	83, 105
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	13, 49, 530, 535
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	2 cut(s)	426, 654
DpnII	GATC	2 cut(s)	424, 652
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	357, 579
Eco72I	CACGTG	1 cut(s)	40
Eco88I	CYCGRG	2 cut(s)	143, 365
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	3 cut(s)	60, 445, 625
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	16, 52, 533, 538
FaiI	YATR	6 cut(s)	14, 50, 195, 518, 531, 536
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	12, 48, 529, 534
FauI	CCCGC	2 cut(s)	37, 86
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	92, 393
GlaI	GCGC	2 cut(s)	82, 104
GsuI	CTGGAG	2 cut(s)	83, 107
HaeIII	GGCC	2 cut(s)	65, 463
HapII	CCGG	3 cut(s)	33, 66, 487
HhaI	GCGC	2 cut(s)	83, 105
Hin1II	CATG	4 cut(s)	16, 52, 533, 538
Hin6I	GCGC	2 cut(s)	81, 103
HinP1I	GCGC	2 cut(s)	81, 103
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	3 cut(s)	33, 66, 487
Hpy188I	TCNGA	2 cut(s)	353, 440
Hpy188III	TCNNGA	2 cut(s)	145, 428
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	240, 368
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	39, 631
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 211, 341, 574
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	2 cut(s)	39, 631
Hsp92II	CATG	4 cut(s)	16, 52, 533, 538
HspAI	GCGC	2 cut(s)	81, 103
Kzo9I	GATC	2 cut(s)	424, 652
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	3 cut(s)	113, 132, 286
Lsp1109I	GCAGC	7 cut(s)	117, 144, 217, 220, 223, 423, 580
MaeI	CTAG	2 cut(s)	92, 393
MaeII	ACGT	2 cut(s)	39, 631
MaeIII	GTNAC	2 cut(s)	35, 632
MalI	GATC	2 cut(s)	426, 654
MboI	GATC	2 cut(s)	424, 652
MboII	GAAGA	7 cut(s)	260, 304, 307, 335, 350, 572, 575
MflI	RGATCY	2 cut(s)	424, 652
MhlI	GDGCHC	2 cut(s)	309, 366
MluCI	AATT	4 cut(s)	263, 469, 578, 647
MnlI	CCTC	9 cut(s)	9, 121, 124, 152, 162, 226, 253, 274, 277
MroXI	GAANNNNTTC	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	3 cut(s)	33, 66, 487
MspR9I	CCNGG	4 cut(s)	62, 67, 447, 627
MvaI	CCWGG	3 cut(s)	62, 447, 627
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	138, 211, 341, 574
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	424, 652
NlaIII	CATG	4 cut(s)	16, 52, 533, 538
NlaIV	GGNNCC	2 cut(s)	426, 654
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	35
PaeR7I	CTCGAG	2 cut(s)	143, 365
PceI	AGGCCT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	398
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	60, 445, 625
PspCI	CACGTG	1 cut(s)	40
PspGI	CCWGG	3 cut(s)	60, 445, 625
PspN4I	GGNNCC	2 cut(s)	426, 654
PspXI	VCTCGAGB	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	424, 652
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	424, 652
ScrFI	CCNGG	4 cut(s)	62, 67, 447, 627
SduI	GDGCHC	2 cut(s)	309, 366
Sfr274I	CTCGAG	2 cut(s)	143, 365
SlaI	CTCGAG	2 cut(s)	143, 365
SmlI	CTYRAG	2 cut(s)	143, 365
SmoI	CTYRAG	2 cut(s)	143, 365
Sse9I	AATT	4 cut(s)	263, 469, 578, 647
SseBI	AGGCCT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	92, 393
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	4 cut(s)	60, 65, 445, 625
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	42, 634
TaqI	TCGA	2 cut(s)	144, 366
TasI	AATT	4 cut(s)	263, 469, 578, 647
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	7 cut(s)	138, 141, 224, 258, 274, 321, 622
TfiI	GAWTC	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	7 cut(s)	105, 132, 205, 208, 211, 411, 568
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	571
XhoI	CTCGAG	2 cut(s)	143, 365
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	2 cut(s)	92, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.