Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

24752194 .. 24754256

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAATCATACCCTTGCCACGACATTCAGTTCCTCGATTTCGAGGGTTTCTCTAGTTTCCAGTATTGCCCTCTTCAGTTTGATTTGGAGTGTGATCCTTGCCAATTAAAGGGTATCAGTCACCCCAATGAACCCAGAGCCAAGCTTGTGGTTGATCACTCTTGCAGGCATCCTTGCGACGCAGGGCATTGCATATATATAGGAGTGGTCTACTTGGTGATGATCACAGCTTCGCCCAATCTAGAGGTTCACTATCTGGATGAGCTACCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTTTGTTGTTGCCGTCGCATAATTCCGGGGCTTTGATTCAGATTAAGGATTATGATACCAAGAAGTCTGGTATTTTGAAAGAAATCTGCAGAAACTGTCCTGCAGTACAACCTTCTTTGGTTGACCATGCTGCTGAGGAAGTACGTGTGGAGGGAAGAGGACACTCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

158

Amino Acids

18.01

Weight (kDa)

5.8

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	411, 447
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	289, 382
AluBI	AGCT	4 cut(s)	145, 230, 265, 292
AluI	AGCT	4 cut(s)	145, 230, 265, 292
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	113, 229
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	301
BclI	TGATCA	2 cut(s)	154, 222
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	2 cut(s)	54, 242
BfmI	CTRYAG	2 cut(s)	391, 405
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	169, 265
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	269, 330
BslI	CCNNNNNNNGG	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	94, 154, 222
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	430
BspMAI	CTGCAG	2 cut(s)	395, 409
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	94, 154, 222
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	78, 454
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	167, 294
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	169, 265
BstKTI	GATC	3 cut(s)	97, 157, 225
BstMBI	GATC	3 cut(s)	94, 154, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 298
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	391, 405
BstV1I	GCAGC	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	169, 265
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	167, 294
CaiI	CAGNNNCTG	1 cut(s)	399
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	410, 446
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	8 cut(s)	140, 145, 230, 265, 292, 296, 301, 335
CviKI_1	RGCY	8 cut(s)	140, 145, 230, 265, 292, 296, 301, 335
CviQI	GTAC	2 cut(s)	410, 446
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	3 cut(s)	96, 156, 224
DpnII	GATC	3 cut(s)	94, 154, 222
Eam1104I	CTCTTC	2 cut(s)	78, 454
EarI	CTCTTC	2 cut(s)	78, 454
EciI	GGCGGA	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	59
FaeI	CATG	1 cut(s)	434
FaiI	YATR	8 cut(s)	10, 194, 196, 198, 200, 324, 357, 432
FatI	CATG	1 cut(s)	430
FbaI	TGATCA	2 cut(s)	154, 222
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	156, 272
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	54, 242
GluI	GCNGC	1 cut(s)	435
HapII	CCGG	2 cut(s)	269, 330
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	5, 340
HpaII	CCGG	2 cut(s)	269, 330
HphI	GGTGA	2 cut(s)	113, 229
Hpy166II	GTNNAC	3 cut(s)	211, 250, 427
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	242, 257
Hpy8I	GTNNAC	3 cut(s)	211, 250, 427
Hpy99I	CGWCG	2 cut(s)	182, 322
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	165, 192, 393, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 298
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	154, 222
Kzo9I	GATC	3 cut(s)	94, 154, 222
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	54, 242
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	96, 156, 224
MboI	GATC	3 cut(s)	94, 154, 222
MboII	GAAGA	2 cut(s)	65, 471
MluCI	AATT	2 cut(s)	104, 325
MnlI	CCTC	8 cut(s)	37, 44, 81, 238, 276, 433, 448, 455
MseI	TTAA	2 cut(s)	107, 348
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	2 cut(s)	269, 330
MspR9I	CCNGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	271, 298
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	94, 154, 222
NlaIII	CATG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	5, 340
PkrI	GCNGC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	449
PstI	CTGCAG	2 cut(s)	395, 409
PstNI	CAGNNNCTG	1 cut(s)	399
RsaI	GTAC	2 cut(s)	411, 447
RsaNI	GTAC	2 cut(s)	410, 446
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	107, 348
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	3 cut(s)	94, 154, 222
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	8 cut(s)	147, 232, 249, 267, 287, 294, 418, 451
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	391, 405
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	104, 325
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	54, 242
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	36, 42, 470
TasI	AATT	2 cut(s)	104, 325
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	5, 340
Tru1I	TTAA	2 cut(s)	107, 348
Tru9I	TTAA	2 cut(s)	107, 348
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	54, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.