Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002441

Physical Location & Seq

Genomic Coordinates Reverse (-)

46940927 .. 46943909

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGAAAATACATGAAGAAATCCAAGATCACAGGCGAAATCGCCGTCATGGAGGTTTCAATTTCACCTCAGTCCTCCCTCGGCGTTCGAACCAGAGCCAAAACCCTAGCCCTCCAGAAGCTCCACCACCAGCAGCAGCAATCGCCCGACTCCGATTCCTCGTCTCTGTACTATCTCCAGCTCCGAAGCCGCCGCCTTGAGAAGCCGCCGCTGCGAAGCGACGCCAACAAGCAGGCTCAGGCTCAGGGTCCTCGGGATTGCTACGCGGGGGGCGGGGCCGTCAATTCGAGGTTGAGTGTGGGCTCGTCGGCGGATTTGGGCTGGGATGAGAGGAACGAGAAGGACGGGGAGGGGTGTTTTGGTAATGTTGAAAGTGAAGCAGAGTATGCCAACGATGTTGAGGCTTCATTTGGGGAAAACAACTTGGATTTTGATGGCAGAGATAGGATTTATCATAGATCTATCATTTCTGGTGTGCATTTCTCTTCTCTGTTTCGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

6.91

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48820 AT5G48820
fragaria_vesca	FvH4_2g19080 FvH4_2g19080 FvH4_4g00660 FvH4_4g00660
malus_domestica	MD00G1167700.v1.1 MD04G1005800.v1.1 MD10G1164700.v1.1 MD10G1164800.v1.1 MD10G1164900.v1.1
prunus_persica	Prupe.1G006300_v2.0.a1 Prupe.8G203300_v2.0.a1 Prupe.8G203300_v2.0.a1
pyrus_communis	pycom04g00540 pycom10g14210 pycom13g29580
rosa_chinensis	RchiOBHm_Chr4g0386031 RchiOBHm_Chr6g0284901
rosa_laevigata	RLG00000010179 RLG00000012702
rosa_multiflora	Rmu_sc0000472.1_g000016 Rmu_sc0000472.1_g000017 Rmu_sc0000472.1_g000018 Rmu_sc0000558.1_g000005
rosa_roxburghii	Rroxscaffold_5G00333790 Rroxscaffold_7G00183970 Rroxscaffold_7G00184230
rosa_rugosa	Rorug03G0306500 Rorug06G0168300 Rorug06G0168400
rosa_samantha	Rh4AG010200 Rh4BG007300 Rh4CG010900 Rh4DG008400 Rh6AG280600 Rh6BG280900 Rh6CG282900 Rh6DG276000
rosa_wichuraiana	Rw4G000120 Rw6G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	7 cut(s)	190, 193, 206, 209, 266, 273, 311
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	60, 371
AluBI	AGCT	2 cut(s)	121, 181
AluI	AGCT	2 cut(s)	121, 181
Alw26I	GTCTC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	133, 136, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspS9I	GGNCC	2 cut(s)	248, 276
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	145, 148, 198
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	2 cut(s)	29, 263
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	107, 502
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	7 cut(s)	134, 137, 190, 193, 206, 209, 212
BlsI	GCNGC	7 cut(s)	135, 138, 191, 194, 207, 210, 213
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	248, 276
BmiI	GGNNCC	2 cut(s)	249, 277
BpmI	CTGGAG	2 cut(s)	98, 161
Bpu10I	CCTNAGC	2 cut(s)	237, 243
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	79, 251
BseDI	CCNNGG	2 cut(s)	79, 251
BseGI	GGATG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	83, 251, 257
BseXI	GCAGC	3 cut(s)	145, 148, 198
BseYI	CCCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	27, 458
BspACI	CCGC	7 cut(s)	190, 193, 206, 209, 266, 273, 311
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	82, 250, 256
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	249, 277
BspT104I	TTCGAA	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	79, 251
BssMI	GATC	2 cut(s)	27, 458
BssNI	GRCGYC	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	69, 237, 243
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	30, 461
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	27, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 211, 386
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	145, 148, 198
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	248, 276
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	13, 49
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	69, 237, 243
DpnI	GATC	2 cut(s)	29, 460
DpnII	GATC	2 cut(s)	27, 458
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	16, 52
FaiI	YATR	4 cut(s)	14, 50, 387, 456
FatI	CATG	2 cut(s)	12, 48
FauI	CCCGC	2 cut(s)	259, 266
Fnu4HI	GCNGC	7 cut(s)	134, 137, 190, 193, 206, 209, 212
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	7 cut(s)	134, 137, 190, 193, 206, 209, 212
FspBI	CTAG	2 cut(s)	107, 502
GluI	GCNGC	7 cut(s)	134, 137, 190, 193, 206, 209, 212
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	2 cut(s)	98, 161
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	16, 52
HinfI	GANTC	2 cut(s)	149, 155
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	154, 185
Hpy188III	TCNNGA	2 cut(s)	115, 254
Hpy99I	CGWCG	2 cut(s)	224, 310
HpyAV	CCTTC	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 211, 386
HpyF3I	CTNAG	3 cut(s)	69, 237, 243
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	16, 52
Kzo9I	GATC	2 cut(s)	27, 458
LmnI	GCTCC	2 cut(s)	126, 186
Lsp1109I	GCAGC	3 cut(s)	145, 148, 198
MaeI	CTAG	2 cut(s)	107, 502
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	29, 460
MboI	GATC	2 cut(s)	27, 458
MboII	GAAGA	2 cut(s)	28, 477
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	60, 283
MlyI	GAGTC	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	142, 211, 386
NdeII	GATC	2 cut(s)	27, 458
NlaIII	CATG	2 cut(s)	16, 52
NlaIV	GGNNCC	2 cut(s)	249, 277
NmeAIII	GCCGAG	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	7 cut(s)	135, 138, 191, 194, 207, 210, 213
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	249, 277
PspPI	GGNCC	2 cut(s)	248, 276
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SatI	GCNGC	7 cut(s)	134, 137, 190, 193, 206, 209, 212
Sau3AI	GATC	2 cut(s)	27, 458
Sau96I	GGNCC	2 cut(s)	248, 276
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	5 cut(s)	57, 70, 123, 183, 293
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	60, 283
SsiI	CCGC	7 cut(s)	190, 193, 206, 209, 266, 273, 311
SspMI	CTAG	2 cut(s)	107, 502
TaqI	TCGA	2 cut(s)	88, 287
TasI	AATT	2 cut(s)	60, 283
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	4 cut(s)	192, 195, 208, 211
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	133, 136, 211
TspDTI	ATGAA	2 cut(s)	29, 396
VpaK11BI	GGWCC	1 cut(s)	248
XspI	CTAG	2 cut(s)	107, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.