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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73970 AT1G73970 AT1G73970 AT1G73970 |
| fragaria_vesca | FvH4_4g06790 FvH4_4g06790 FvH4_4g06790 FvH4_4g06790 FvH4_4g06790 |
| malus_domestica | MD15G1394600.v1.1 |
| prunus_persica | Prupe.1G071100_v2.0.a1 |
| pyrus_communis | pycom15g35540 |
| rosa_chinensis | RchiOBHm_Chr4g0398711 |
| rosa_laevigata | RLG00000009329 |
| rosa_multiflora | Rmu_co8494159.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00343670 |
| rosa_rugosa | Rorug04G0011000 Rorug04G0011100 |
| rosa_samantha | Rh4AG088800 Rh4BG085800 Rh4CG096900 Rh4DG080300 Rh7BG226400 |
| rosa_wichuraiana | Rw4G007350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2261 |
| AciI | CCGC | 3 cut(s) | 821, 1675, 1866 |
| AclWI | GGATC | 3 cut(s) | 1308, 1386, 1617 |
| AcoI | YGGCCR | 1 cut(s) | 2263 |
| AcsI | RAATTY | 2 cut(s) | 1453, 1460 |
| AcuI | CTGAAG | 4 cut(s) | 55, 62, 453, 591 |
| AfaI | GTAC | 8 cut(s) | 536, 543, 846, 1124, 1134, 1371, 1494, 2208 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1781, 1985, 2261 |
| AgsI | TTSAA | 9 cut(s) | 32, 116, 176, 957, 1453, 1458, 1712, 2096, 2375 |
| AhlI | ACTAGT | 2 cut(s) | 562, 1954 |
| AjnI | CCWGG | 7 cut(s) | 777, 1147, 1191, 1467, 2109, 2149, 2190 |
| Alw21I | GWGCWC | 1 cut(s) | 1329 |
| Alw26I | GTCTC | 4 cut(s) | 129, 785, 1054, 1108 |
| AlwI | GGATC | 3 cut(s) | 1308, 1386, 1617 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2209, 2309 |
| Ama87I | CYCGRG | 1 cut(s) | 1842 |
| AoxI | GGCC | 5 cut(s) | 671, 852, 1221, 1654, 2263 |
| ApeKI | GCWGC | 7 cut(s) | 11, 833, 836, 1924, 2006, 2347, 2393 |
| ApoI | RAATTY | 2 cut(s) | 1453, 1460 |
| AseI | ATTAAT | 3 cut(s) | 765, 950, 1173 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 438, 564, 1104, 1993 |
| AspLEI | GCGC | 2 cut(s) | 469, 1536 |
| AspS9I | GGNCC | 5 cut(s) | 671, 852, 1221, 1655, 1695 |
| AsuC2I | CCSGG | 1 cut(s) | 1882 |
| AsuHPI | GGTGA | 2 cut(s) | 413, 2099 |
| AvaI | CYCGRG | 1 cut(s) | 1842 |
| AvaII | GGWCC | 1 cut(s) | 1695 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1476, 1509 |
| BalI | TGGCCA | 1 cut(s) | 2265 |
| BanII | GRGCYC | 1 cut(s) | 699 |
| BauI | CACGAG | 1 cut(s) | 279 |
| BbsI | GAAGAC | 4 cut(s) | 490, 927, 995, 2103 |
| Bbv12I | GWGCWC | 1 cut(s) | 1329 |
| BbvCI | CCTCAGC | 1 cut(s) | 1166 |
| BbvI | GCAGC | 7 cut(s) | 23, 820, 848, 1936, 2018, 2334, 2405 |
| BccI | CCATC | 3 cut(s) | 174, 709, 2255 |
| BceAI | ACGGC | 2 cut(s) | 1731, 2195 |
| BciT130I | CCWGG | 7 cut(s) | 779, 1149, 1193, 1469, 2111, 2151, 2192 |
| BciVI | GTATCC | 3 cut(s) | 1477, 1552, 2066 |
| BclI | TGATCA | 2 cut(s) | 988, 1894 |
| BcnI | CCSGG | 1 cut(s) | 1882 |
| BcoDI | GTCTC | 4 cut(s) | 129, 785, 1054, 1108 |
| BcuI | ACTAGT | 2 cut(s) | 562, 1954 |
| BfaI | CTAG | 5 cut(s) | 563, 1770, 1955, 2165, 2463 |
| BfmI | CTRYAG | 6 cut(s) | 514, 834, 867, 915, 936, 1010 |
| BfuI | GTATCC | 3 cut(s) | 1477, 1552, 2066 |
| BglII | AGATCT | 2 cut(s) | 863, 911 |
| BisI | GCNGC | 7 cut(s) | 12, 834, 837, 1925, 2007, 2348, 2394 |
| BlpI | GCTNAGC | 2 cut(s) | 126, 222 |
| BlsI | GCNGC | 7 cut(s) | 13, 835, 838, 1926, 2008, 2349, 2395 |
| BmcAI | AGTACT | 3 cut(s) | 543, 846, 1371 |
| Bme1390I | CCNGG | 8 cut(s) | 779, 1149, 1193, 1469, 1882, 2111, 2151, 2192 |
| Bme18I | GGWCC | 1 cut(s) | 1695 |
| BmeT110I | CYCGRG | 1 cut(s) | 1842 |
| BmgT120I | GGNCC | 5 cut(s) | 671, 852, 1221, 1655, 1695 |
| BmiI | GGNNCC | 2 cut(s) | 1222, 2148 |
| BmrFI | CCNGG | 8 cut(s) | 779, 1149, 1193, 1469, 1882, 2111, 2151, 2192 |
| BoxI | GACNNNNGTC | 1 cut(s) | 191 |
| BpiI | GAAGAC | 4 cut(s) | 490, 927, 995, 2103 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 126, 158 |
| BpmI | CTGGAG | 6 cut(s) | 246, 861, 1403, 2019, 2383, 2427 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1166 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 126, 222 |
| BpuEI | CTTGAG | 2 cut(s) | 213, 1541 |
| BpuMI | CCSGG | 1 cut(s) | 1882 |
| BsaBI | GATNNNNATC | 2 cut(s) | 987, 1893 |
| BsaI | GGTCTC | 2 cut(s) | 785, 1054 |
| BsaJI | CCNNGG | 4 cut(s) | 777, 1698, 2010, 2190 |
| BsaWI | WCCGGW | 1 cut(s) | 924 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1781, 1985, 2261 |
| Bse1I | ACTGG | 3 cut(s) | 1234, 1434, 2135 |
| Bse3DI | GCAATG | 1 cut(s) | 1755 |
| Bse8I | GATNNNNATC | 2 cut(s) | 987, 1893 |
| BseBI | CCWGG | 7 cut(s) | 779, 1149, 1193, 1469, 2111, 2151, 2192 |
| BseDI | CCNNGG | 4 cut(s) | 777, 1698, 2010, 2190 |
| BseGI | GGATG | 5 cut(s) | 1369, 1708, 1822, 1906, 2119 |
| BseJI | GATNNNNATC | 2 cut(s) | 987, 1893 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1781, 1985, 2261 |
| BseMI | GCAATG | 1 cut(s) | 1755 |
| BseMII | CTCAG | 9 cut(s) | 117, 213, 215, 316, 839, 896, 1157, 1386, 1959 |
| BseNI | ACTGG | 3 cut(s) | 1234, 1434, 2135 |
| BseRI | GAGGAG | 1 cut(s) | 545 |
| BseXI | GCAGC | 7 cut(s) | 23, 820, 848, 1936, 2018, 2334, 2405 |
| BseYI | CCCAGC | 1 cut(s) | 2038 |
| BsgI | GTGCAG | 1 cut(s) | 2412 |
| BshFI | GGCC | 5 cut(s) | 673, 854, 1223, 1656, 2265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1329 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1842 |
| BsiSI | CCGG | 3 cut(s) | 925, 1531, 1881 |
| BslFI | GGGAC | 1 cut(s) | 1833 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1781, 1985, 2261 |
| BsmAI | GTCTC | 4 cut(s) | 129, 785, 1054, 1108 |
| BsmBI | CGTCTC | 1 cut(s) | 1108 |
| BsmFI | GGGAC | 1 cut(s) | 1833 |
| BsmI | GAATGC | 3 cut(s) | 1536, 1722, 1868 |
| BsnI | GGCC | 5 cut(s) | 673, 854, 1223, 1656, 2265 |
| Bso31I | GGTCTC | 2 cut(s) | 785, 1054 |
| BsoBI | CYCGRG | 1 cut(s) | 1842 |
| Bsp1286I | GDGCHC | 2 cut(s) | 699, 1329 |
| Bsp1407I | TGTACA | 1 cut(s) | 1122 |
| Bsp143I | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 126, 222 |
| BspACI | CCGC | 3 cut(s) | 821, 1675, 1866 |
| BspANI | GGCC | 5 cut(s) | 673, 854, 1223, 1656, 2265 |
| BspCNI | CTCAG | 9 cut(s) | 118, 214, 214, 315, 840, 897, 1158, 1387, 1960 |
| BspHI | TCATGA | 1 cut(s) | 699 |
| BspLI | GGNNCC | 2 cut(s) | 1222, 2148 |
| BspMAI | CTGCAG | 2 cut(s) | 838, 919 |
| BspPI | GGATC | 3 cut(s) | 1308, 1386, 1617 |
| BspTNI | GGTCTC | 2 cut(s) | 785, 1054 |
| BsrDI | GCAATG | 1 cut(s) | 1755 |
| BsrGI | TGTACA | 1 cut(s) | 1122 |
| BsrI | ACTGG | 3 cut(s) | 1234, 1434, 2135 |
| BssECI | CCNNGG | 4 cut(s) | 777, 1698, 2010, 2190 |
| BssMI | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| BssSI | CACGAG | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 2 cut(s) | 1698, 2010 |
| Bst2BI | CACGAG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 7 cut(s) | 779, 1149, 1193, 1469, 2111, 2151, 2192 |
| Bst4CI | ACNGT | 2 cut(s) | 1014, 1307 |
| Bst6I | CTCTTC | 4 cut(s) | 38, 216, 279, 407 |
| BstAUI | TGTACA | 1 cut(s) | 1122 |
| BstC8I | GCNNGC | 4 cut(s) | 579, 1720, 1762, 1766 |
| BstF5I | GGATG | 5 cut(s) | 1369, 1708, 1822, 1906, 2119 |
| BstHHI | GCGC | 2 cut(s) | 469, 1536 |
| BstKTI | GATC | 8 cut(s) | 866, 914, 991, 1303, 1381, 1625, 1897, 1952 |
| BstMAI | GTCTC | 4 cut(s) | 129, 785, 1054, 1108 |
| BstMBI | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 98, 368, 473, 517, 1400, 1761, 1770 |
| BstNI | CCWGG | 7 cut(s) | 779, 1149, 1193, 1469, 2111, 2151, 2192 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 191 |
| BstSCI | CCNGG | 8 cut(s) | 777, 1147, 1191, 1467, 1880, 2109, 2149, 2190 |
| BstSFI | CTRYAG | 6 cut(s) | 514, 834, 867, 915, 936, 1010 |
| BstV1I | GCAGC | 7 cut(s) | 23, 820, 848, 1936, 2018, 2334, 2405 |
| BstV2I | GAAGAC | 4 cut(s) | 490, 927, 995, 2103 |
| BstX2I | RGATCY | 4 cut(s) | 863, 911, 1378, 1622 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 545, 2407 |
| BstYI | RGATCY | 4 cut(s) | 863, 911, 1378, 1622 |
| BsuI | GTATCC | 3 cut(s) | 1477, 1552, 2066 |
| BsuRI | GGCC | 5 cut(s) | 673, 854, 1223, 1656, 2265 |
| BtsCI | GGATG | 5 cut(s) | 1369, 1708, 1822, 1906, 2119 |
| BtsI | GCAGTG | 1 cut(s) | 688 |
| BtsIMutI | CAGTG | 6 cut(s) | 58, 615, 688, 1019, 1303, 1427 |
| Cac8I | GCNNGC | 4 cut(s) | 579, 1720, 1762, 1766 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2209, 2309 |
| CciI | TCATGA | 1 cut(s) | 699 |
| CfoI | GCGC | 2 cut(s) | 469, 1536 |
| Cfr13I | GGNCC | 5 cut(s) | 671, 852, 1221, 1655, 1695 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 8 cut(s) | 535, 542, 845, 1123, 1133, 1370, 1493, 2207 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1621, 1656 |
| CviAII | CATG | 8 cut(s) | 120, 215, 643, 700, 829, 1126, 1321, 1555 |
| CviQI | GTAC | 8 cut(s) | 535, 542, 845, 1123, 1133, 1370, 1493, 2207 |
| DpnI | GATC | 8 cut(s) | 865, 913, 990, 1302, 1380, 1624, 1896, 1951 |
| DpnII | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| EaeI | YGGCCR | 1 cut(s) | 2263 |
| Eam1104I | CTCTTC | 4 cut(s) | 38, 216, 279, 407 |
| EarI | CTCTTC | 4 cut(s) | 38, 216, 279, 407 |
| Eco130I | CCWWGG | 2 cut(s) | 1698, 2010 |
| Eco24I | GRGCYC | 1 cut(s) | 699 |
| Eco31I | GGTCTC | 2 cut(s) | 785, 1054 |
| Eco47I | GGWCC | 1 cut(s) | 1695 |
| Eco57I | CTGAAG | 4 cut(s) | 55, 62, 453, 591 |
| Eco88I | CYCGRG | 1 cut(s) | 1842 |
| EcoO109I | RGGNCCY | 1 cut(s) | 852 |
| EcoRI | GAATTC | 1 cut(s) | 1453 |
| EcoRII | CCWGG | 7 cut(s) | 777, 1147, 1191, 1467, 2109, 2149, 2190 |
| EcoT14I | CCWWGG | 2 cut(s) | 1698, 2010 |
| EcoT38I | GRGCYC | 1 cut(s) | 699 |
| ErhI | CCWWGG | 2 cut(s) | 1698, 2010 |
| Esp3I | CGTCTC | 1 cut(s) | 1108 |
| FaeI | CATG | 8 cut(s) | 123, 218, 646, 703, 832, 1129, 1324, 1558 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 222, 254, 1189, 1221 |
| FaqI | GGGAC | 1 cut(s) | 1833 |
| FatI | CATG | 8 cut(s) | 119, 214, 642, 699, 828, 1125, 1320, 1554 |
| FauNDI | CATATG | 1 cut(s) | 1278 |
| FbaI | TGATCA | 2 cut(s) | 988, 1894 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 834, 837, 1925, 2007, 2348, 2394 |
| FokI | GGATG | 5 cut(s) | 1376, 1715, 1809, 1913, 2126 |
| FriOI | GRGCYC | 1 cut(s) | 699 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 834, 837, 1925, 2007, 2348, 2394 |
| FspBI | CTAG | 5 cut(s) | 563, 1770, 1955, 2165, 2463 |
| GlaI | GCGC | 2 cut(s) | 468, 1535 |
| GluI | GCNGC | 7 cut(s) | 12, 834, 837, 1925, 2007, 2348, 2394 |
| GsaI | CCCAGC | 1 cut(s) | 2042 |
| GsuI | CTGGAG | 6 cut(s) | 246, 861, 1403, 2019, 2383, 2427 |
| HaeIII | GGCC | 5 cut(s) | 673, 854, 1223, 1656, 2265 |
| HapII | CCGG | 3 cut(s) | 925, 1531, 1881 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 2 cut(s) | 469, 1536 |
| Hin1II | CATG | 8 cut(s) | 123, 218, 646, 703, 832, 1129, 1324, 1558 |
| Hin6I | GCGC | 2 cut(s) | 467, 1534 |
| HinP1I | GCGC | 2 cut(s) | 467, 1534 |
| HincII | GTYRAC | 4 cut(s) | 196, 1095, 1310, 1642 |
| HindII | GTYRAC | 4 cut(s) | 196, 1095, 1310, 1642 |
| HindIII | AAGCTT | 1 cut(s) | 236 |
| HpaII | CCGG | 3 cut(s) | 925, 1531, 1881 |
| HphI | GGTGA | 2 cut(s) | 413, 2099 |
| Hpy166II | GTNNAC | 6 cut(s) | 196, 560, 972, 1095, 1310, 1642 |
| Hpy188I | TCNGA | 7 cut(s) | 204, 433, 481, 982, 1894, 2146, 2311 |
| Hpy8I | GTNNAC | 6 cut(s) | 196, 560, 972, 1095, 1310, 1642 |
| HpyAV | CCTTC | 8 cut(s) | 351, 428, 480, 607, 1119, 1123, 1780, 1879 |
| HpyCH4III | ACNGT | 2 cut(s) | 1014, 1307 |
| HpyCH4IV | ACGT | 1 cut(s) | 1117 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 98, 368, 473, 517, 1400, 1761, 1770 |
| HpySE526I | ACGT | 1 cut(s) | 1117 |
| Hsp92II | CATG | 8 cut(s) | 123, 218, 646, 703, 832, 1129, 1324, 1558 |
| HspAI | GCGC | 2 cut(s) | 467, 1534 |
| Ksp22I | TGATCA | 2 cut(s) | 988, 1894 |
| Kzo9I | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| LmnI | GCTCC | 6 cut(s) | 19, 80, 1324, 1801, 1921, 2146 |
| Lsp1109I | GCAGC | 7 cut(s) | 23, 820, 848, 1936, 2018, 2334, 2405 |
| MaeI | CTAG | 5 cut(s) | 563, 1770, 1955, 2165, 2463 |
| MaeII | ACGT | 1 cut(s) | 1117 |
| MaeIII | GTNAC | 3 cut(s) | 625, 1435, 2317 |
| MalI | GATC | 8 cut(s) | 865, 913, 990, 1302, 1380, 1624, 1896, 1951 |
| MboI | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| MflI | RGATCY | 4 cut(s) | 863, 911, 1378, 1622 |
| MhlI | GDGCHC | 2 cut(s) | 699, 1329 |
| MlsI | TGGCCA | 1 cut(s) | 2265 |
| MluNI | TGGCCA | 1 cut(s) | 2265 |
| MlyI | GAGTC | 6 cut(s) | 424, 1406, 1749, 1919, 2150, 2434 |
| MmeI | TCCRAC | 4 cut(s) | 169, 1772, 1823, 2124 |
| Mox20I | TGGCCA | 1 cut(s) | 2265 |
| MroXI | GAANNNNTTC | 4 cut(s) | 438, 564, 1104, 1993 |
| MscI | TGGCCA | 1 cut(s) | 2265 |
| MseI | TTAA | 8 cut(s) | 765, 857, 950, 1173, 1209, 1464, 1916, 2453 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1827, 2112 |
| Msp20I | TGGCCA | 1 cut(s) | 2265 |
| MspA1I | CMGCKG | 3 cut(s) | 362, 839, 1160 |
| MspI | CCGG | 3 cut(s) | 925, 1531, 1881 |
| MspR9I | CCNGG | 8 cut(s) | 779, 1149, 1193, 1469, 1882, 2111, 2151, 2192 |
| Mva1269I | GAATGC | 3 cut(s) | 1536, 1722, 1868 |
| MvaI | CCWGG | 7 cut(s) | 779, 1149, 1193, 1469, 2111, 2151, 2192 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 98, 368, 473, 517, 1400, 1761, 1770 |
| NciI | CCSGG | 1 cut(s) | 1882 |
| NdeI | CATATG | 1 cut(s) | 1278 |
| NdeII | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| NlaIII | CATG | 8 cut(s) | 123, 218, 646, 703, 832, 1129, 1324, 1558 |
| NlaIV | GGNNCC | 2 cut(s) | 1222, 2148 |
| NmuCI | GTSAC | 1 cut(s) | 1435 |
| PaeR7I | CTCGAG | 1 cut(s) | 1842 |
| PagI | TCATGA | 1 cut(s) | 699 |
| PctI | GAATGC | 3 cut(s) | 1536, 1722, 1868 |
| PdmI | GAANNNNTTC | 4 cut(s) | 438, 564, 1104, 1993 |
| PfeI | GAWTC | 9 cut(s) | 284, 356, 703, 932, 1288, 1598, 1889, 2275, 2306 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2261 |
| PfoI | TCCNGGA | 1 cut(s) | 1880 |
| PkrI | GCNGC | 7 cut(s) | 13, 835, 838, 1926, 2008, 2349, 2395 |
| PleI | GAGTC | 6 cut(s) | 423, 1405, 1748, 1918, 2149, 2434 |
| PpsI | GAGTC | 6 cut(s) | 423, 1405, 1748, 1918, 2149, 2434 |
| PshAI | GACNNNNGTC | 1 cut(s) | 191 |
| PshBI | ATTAAT | 3 cut(s) | 765, 950, 1173 |
| Psp6I | CCWGG | 7 cut(s) | 777, 1147, 1191, 1467, 2109, 2149, 2190 |
| PspFI | CCCAGC | 1 cut(s) | 2038 |
| PspGI | CCWGG | 7 cut(s) | 777, 1147, 1191, 1467, 2109, 2149, 2190 |
| PspN4I | GGNNCC | 2 cut(s) | 1222, 2148 |
| PspPI | GGNCC | 5 cut(s) | 671, 852, 1221, 1655, 1695 |
| PspXI | VCTCGAGB | 1 cut(s) | 1842 |
| PstI | CTGCAG | 2 cut(s) | 838, 919 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2209, 2309 |
| PsuI | RGATCY | 4 cut(s) | 863, 911, 1378, 1622 |
| PvuII | CAGCTG | 3 cut(s) | 362, 839, 1160 |
| RsaI | GTAC | 8 cut(s) | 536, 543, 846, 1124, 1134, 1371, 1494, 2208 |
| RsaNI | GTAC | 8 cut(s) | 535, 542, 845, 1123, 1133, 1370, 1493, 2207 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1827, 2112 |
| SaqAI | TTAA | 8 cut(s) | 765, 857, 950, 1173, 1209, 1464, 1916, 2453 |
| SatI | GCNGC | 7 cut(s) | 12, 834, 837, 1925, 2007, 2348, 2394 |
| Sau3AI | GATC | 8 cut(s) | 863, 911, 988, 1300, 1378, 1622, 1894, 1949 |
| Sau96I | GGNCC | 5 cut(s) | 671, 852, 1221, 1655, 1695 |
| ScaI | AGTACT | 3 cut(s) | 543, 846, 1371 |
| SchI | GAGTC | 6 cut(s) | 424, 1406, 1749, 1919, 2150, 2434 |
| ScrFI | CCNGG | 8 cut(s) | 779, 1149, 1193, 1469, 1882, 2111, 2151, 2192 |
| SduI | GDGCHC | 2 cut(s) | 699, 1329 |
| SfcI | CTRYAG | 6 cut(s) | 514, 834, 867, 915, 936, 1010 |
| Sfr274I | CTCGAG | 1 cut(s) | 1842 |
| SinI | GGWCC | 1 cut(s) | 1695 |
| SlaI | CTCGAG | 1 cut(s) | 1842 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1827, 2112 |
| SmlI | CTYRAG | 3 cut(s) | 228, 1520, 1842 |
| SmoI | CTYRAG | 3 cut(s) | 228, 1520, 1842 |
| SpeI | ACTAGT | 2 cut(s) | 562, 1954 |
| SsiI | CCGC | 3 cut(s) | 821, 1675, 1866 |
| SspI | AATATT | 2 cut(s) | 1104, 1688 |
| SspMI | CTAG | 5 cut(s) | 563, 1770, 1955, 2165, 2463 |
| StyD4I | CCNGG | 8 cut(s) | 777, 1147, 1191, 1467, 1880, 2109, 2149, 2190 |
| StyI | CCWWGG | 2 cut(s) | 1698, 2010 |
| TaaI | ACNGT | 2 cut(s) | 1014, 1307 |
| TaiI | ACGT | 1 cut(s) | 1120 |
| TaqI | TCGA | 8 cut(s) | 488, 1036, 1112, 1540, 1567, 1843, 2017, 2476 |
| TaqII | GACCGA | 1 cut(s) | 1112 |
| TatI | WGTACW | 4 cut(s) | 541, 844, 1122, 1369 |
| TfiI | GAWTC | 9 cut(s) | 284, 356, 703, 932, 1288, 1598, 1889, 2275, 2306 |
| Tru1I | TTAA | 8 cut(s) | 765, 857, 950, 1173, 1209, 1464, 1916, 2453 |
| Tru9I | TTAA | 8 cut(s) | 765, 857, 950, 1173, 1209, 1464, 1916, 2453 |
| TscAI | CASTG | 6 cut(s) | 58, 615, 688, 1019, 1310, 1434 |
| TseFI | GTSAC | 1 cut(s) | 1435 |
| TseI | GCWGC | 7 cut(s) | 11, 833, 836, 1924, 2006, 2347, 2393 |
| Tsp45I | GTSAC | 1 cut(s) | 1435 |
| TspRI | CASTG | 6 cut(s) | 58, 615, 688, 1019, 1310, 1434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2261 |
| VpaK11BI | GGWCC | 1 cut(s) | 1695 |
| VspI | ATTAAT | 3 cut(s) | 765, 950, 1173 |
| XapI | RAATTY | 2 cut(s) | 1453, 1460 |
| XhoI | CTCGAG | 1 cut(s) | 1842 |
| XmnI | GAANNNNTTC | 4 cut(s) | 438, 564, 1104, 1993 |
| XspI | CTAG | 5 cut(s) | 563, 1770, 1955, 2165, 2463 |
| ZrmI | AGTACT | 3 cut(s) | 543, 846, 1371 |