Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007789

Physical Location & Seq

Genomic Coordinates Forward (+)

11960421 .. 11963520

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG080300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGGCAAAAGCAGGGAGTACTCTTTTTCTTGAAGATTGGCTGAGAAGTGTGAGTGGCTATGGCAATAGCTTCAGCTCTAGAAACTACTCAGCCTCATCTGCAAGAGCCATAATTCAAGCTTGGGCTGAGCTTAGAGATTCCCTCCAACACCAATCATTTCAATCCCATCATCTTCAATCTCTAAAGACTCTTGTCAATTCACAGACTTCTCTTCATGTTGCTGAGCCCCAAGCAAAGCTTCTGCTTTCAATTCTGTCCTCCCCAAACCTTTGTCTTCCTCATGAATCCTATACTCTCTTTCTCAGGCTCCTCTATATATGGGTGAGGAAATCTGCCAGACCCTCTTCGGTTCTCGTTGATTCAGCTGTGGAGGTTCTTTTCAACCTATTTTCTTCAAACCAATATGAGTCAAAGAAGAGTCCAGGACTCTTTTCTGAAGGTGTTCTCCTTTTGGGGTCCTTTTCTTTTGCGCCTTCAGCGTCTGAAAACTCGAAAACCGTCTGCTTAGAGCTGCTCTGTAGGCTGTTGGGAGAGGAGTATCAGGTGCTTGGATCATTTAGTGGACTAATTCCAGAAGTGCTTGCTGGAATTGGGTATGCTTTATCTTCTTCCAAGAGTGTTCATTTTGTTACAATTTTGGATTTTGTGTTGAGTATTTGGGGTAAGGAAAGTGGCCCTCAGGGAACCGTTTCTCATGGGCTGATGGTTCTGCATTTGATGGAATGGGTATTGTCTGGTTTGAGCAATTTTCGTTCTGTAGAGAAAATTAATACTCTTTGTAGGGAGGCTTTAGAGACCTCAAAACCAAACTATGTTCCATTCGCGGTTGTCATGACTGCAGCTGGAGTACTGAGGGCTTTGAATAGATCTGTAGTGAGAGGTCTTGCGCTGGATACTATTTCCAAACTGAGGATGTCTGCAGAAGATCGGATAGAGTCTGTAGCAAGAGAGTTAATTTCAATAATGAGAGGATTTACGAGTTTAAGTTATGATCACACAGATAGTCTTTTGCTGCAGTGTGTTGCAGTTGCATTGGCTCGAAGTGGTGTTGTCTCTTCTCGTGACCCTTTGTTTATCTGCCTTGCTTCTGCATTGTTGACTCAAATATTTCCCTTGAGACGTTTGTACATGAAGGTATTGGAATCGATGCATAGCAGTTCAGCCGTACTGAGGATCAATGAGGTCAAAGAGCACCTTGAAAGCATGACTTTTAAGGAAGCAGGGGCCATAACTGGTGTTTTCTGCAATCTGTATGTTTCAGTAGATGAAAAAAGCCAATACATAGTGGAGAATCTTATATGGGATTACTGTCAACGTATATACATGGAGCACCGACAGGTCGCTTTGATTCTTCGTGGTAAAGAGGATGAATTACTTGGAGATATGGAGAAAATTGCTGAGTCTGCTTTTCTTATGGTTGTACTTTTTACATCGGCAGTCACAAAGTACAAGCTAAATTCAAAATTTAACCCCGAAACTCAATTGGATATATCAGTTCGAATACTTATTTCATTGTCTTGTGTTGAGTATTTCCGGCGCATTCGTTTACCAGAATACATGGATACTATTCGAGGTACCGTTGTGAGTGTTCAGGAAACTGATTCTGCTTGTGTATCTTTCGTAAAATCCATTCCAGCTTATGTTGACTTGACACAGGGTCCAGATTTTTCTTTCCTACGGAAAATGGAATATGTGTGGTCCAGTGATGAGGTTCAAACTGCTCGCATTTTGTTCTACTTAAGAGTCATTCCAACTTGCATTGGACGAGTGCCTAGCTCTGTATTTGGAAAAGTGGTTGCTCCAACTATGTTCTTATATATGGGACATCCTAATGGAAAAGTAGCTAGAGCATCACATTCTATTTTTTCAGCATTCATATCTTCTGCCAAGGATTCTGATGAAGATGAAAGGGTGTCATTAAAGGAGCAGCTTGTTTTCTACTATATACAGAGATCACTACTGGAATATCCTGAGATCACTCCTTTTGAGGGAATGGCTTCTGGAGTTGCAGCTGTGGTTCGACATCTTCCTGCTGGAAGCCCAGCTATATTTTATTGTATCCATTGTCTGGTTGAAAAAGCTAATAGGTGCAATAAAGACTTTGCTCAGCAGGCTGATATGTGGAAGAACTGGCAAGGAGAATCGGAGCCTTGCAAGAAAATCCTAGATTTGCTTTTACGACTGATTTCTCTTGTTGACATACAGGTACTGCCAGACTTGATGAAGTTGTTGGCACAGCTGATCGCCCAACTACCCAAAGATGGCCAGAATATGATTCTAAATGAGTTATATTCACAGGTGGCAGAATCTGATGATGTAACACGCAAACCCAGTTTAGTTTCTTGGCTGCAGTCATTGTCTTACATTTGTTTTCATGAAACGAGTGGAACTGCAGCCTCTAAAAAGTTGGGAACTGAAGAAACCATCACCTCTATGCAGACTCCAGATTCATTAAGTTATACTAGCCTAAATGCTCGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

827

Amino Acids

92.29

Weight (kDa)

6.52

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73970 AT1G73970 AT1G73970 AT1G73970
fragaria_vesca	FvH4_4g06790 FvH4_4g06790 FvH4_4g06790 FvH4_4g06790 FvH4_4g06790
malus_domestica	MD15G1394600.v1.1
prunus_persica	Prupe.1G071100_v2.0.a1
pyrus_communis	pycom15g35540
rosa_chinensis	RchiOBHm_Chr4g0398711
rosa_laevigata	RLG00000009329
rosa_multiflora	Rmu_co8494159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343670
rosa_rugosa	Rorug04G0011000 Rorug04G0011100
rosa_samantha	Rh4AG088800 Rh4BG085800 Rh4CG096900 Rh4DG080300 Rh7BG226400
rosa_wichuraiana	Rw4G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1574
AccB1I	GGYRCC	1 cut(s)	1574
AccB7I	CCANNNNNTGG	1 cut(s)	2068
AccII	CGCG	1 cut(s)	824
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	2 cut(s)	559, 1181
AcoI	YGGCCR	1 cut(s)	2263
AcsI	RAATTY	2 cut(s)	1456, 1463
AcuI	CTGAAG	4 cut(s)	55, 456, 459, 2436
AfaI	GTAC	8 cut(s)	19, 849, 1127, 1167, 1422, 1448, 1576, 2208
AfiI	CCNNNNNNNGG	5 cut(s)	909, 1170, 1988, 2068, 2261
AflII	CTTAAG	1 cut(s)	1738
AhdI	GACNNNNNGTC	1 cut(s)	1656
AjnI	CCWGG	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
Alw21I	GWGCWC	2 cut(s)	1194, 1332
Alw26I	GTCTC	3 cut(s)	788, 1057, 1111
AlwI	GGATC	2 cut(s)	559, 1181
AlwNI	CAGNNNCTG	3 cut(s)	482, 2209, 2309
AoxI	GGCC	3 cut(s)	673, 1224, 2263
ApeKI	GCWGC	7 cut(s)	511, 839, 1012, 1927, 2009, 2347, 2393
ApoI	RAATTY	2 cut(s)	1456, 1463
AseI	ATTAAT	1 cut(s)	768
Asp700I	GAANNNNTTC	3 cut(s)	441, 688, 1996
Asp718I	GGTACC	1 cut(s)	1574
AspLEI	GCGC	3 cut(s)	472, 889, 1539
AspS9I	GGNCC	5 cut(s)	456, 674, 1224, 1658, 1698
AsuHPI	GGTGA	2 cut(s)	334, 2419
AsuII	TTCGAA	1 cut(s)	1498
AvaII	GGWCC	3 cut(s)	456, 1658, 1698
AxyI	CCTNAGG	1 cut(s)	678
BaeI	ACNNNNGTAYC	2 cut(s)	1566, 1599
BalI	TGGCCA	1 cut(s)	2265
BanI	GGYRCC	1 cut(s)	1574
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	1059
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	2 cut(s)	1194, 1332
BbvI	GCAGC	7 cut(s)	498, 851, 999, 1939, 2021, 2334, 2405
BccI	CCATC	5 cut(s)	174, 697, 712, 2255, 2432
BceAI	ACGGC	1 cut(s)	1148
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	3 cut(s)	886, 1555, 2069
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	3 cut(s)	788, 1057, 1111
BfaI	CTAG	5 cut(s)	78, 1773, 1845, 2165, 2463
BfmI	CTRYAG	9 cut(s)	517, 756, 837, 870, 918, 939, 1013, 2348, 2391
BfrI	CTTAAG	1 cut(s)	1738
BfuI	GTATCC	3 cut(s)	886, 1555, 2069
BglII	AGATCT	1 cut(s)	866
BisI	GCNGC	7 cut(s)	512, 840, 1013, 1928, 2010, 2348, 2394
BlpI	GCTNAGC	3 cut(s)	126, 222, 2106
BlsI	GCNGC	7 cut(s)	513, 841, 1014, 1929, 2011, 2349, 2395
BmcAI	AGTACT	2 cut(s)	19, 849
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	3 cut(s)	456, 1658, 1698
BmeRI	GACNNNNNGTC	1 cut(s)	1656
BmgT120I	GGNCC	5 cut(s)	456, 674, 1224, 1658, 1698
BmiI	GGNNCC	7 cut(s)	308, 457, 685, 1225, 1576, 1659, 2148
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	2325
BmsI	GCATC	2 cut(s)	1137, 1859
BmuI	ACTGGG	1 cut(s)	2325
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	3 cut(s)	864, 2022, 2427
Bpu1102I	GCTNAGC	3 cut(s)	126, 222, 2106
Bpu14I	TTCGAA	1 cut(s)	1498
BpuEI	CTTGAG	1 cut(s)	1135
Bsa29I	ATCGAT	1 cut(s)	1145
BsaI	GGTCTC	1 cut(s)	788
BsaJI	CCNNGG	1 cut(s)	1887
Bsc4I	CCNNNNNNNGG	5 cut(s)	909, 1170, 1988, 2068, 2261
Bse1I	ACTGG	5 cut(s)	1237, 1701, 1965, 2135, 2331
Bse21I	CCTNAGG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	1145
BseDI	CCNNGG	1 cut(s)	1887
BseGI	GGATG	3 cut(s)	918, 1372, 1825
BseLI	CCNNNNNNNGG	5 cut(s)	909, 1170, 1988, 2068, 2261
BseNI	ACTGG	5 cut(s)	1237, 1701, 1965, 2135, 2331
BseRI	GAGGAG	2 cut(s)	299, 548
BseXI	GCAGC	7 cut(s)	498, 851, 999, 1939, 2021, 2334, 2405
BseYI	CCCAGC	1 cut(s)	2041
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	3 cut(s)	675, 1226, 2265
BshNI	GGYRCC	1 cut(s)	1574
BshVI	ATCGAT	1 cut(s)	1145
BsiHKAI	GWGCWC	2 cut(s)	1194, 1332
BsiSI	CCGG	1 cut(s)	1534
BslFI	GGGAC	1 cut(s)	1836
BslI	CCNNNNNNNGG	5 cut(s)	909, 1170, 1988, 2068, 2261
BsmAI	GTCTC	3 cut(s)	788, 1057, 1111
BsmBI	CGTCTC	1 cut(s)	1111
BsmFI	GGGAC	1 cut(s)	1836
BsmI	GAATGC	2 cut(s)	1539, 1871
BsnI	GGCC	3 cut(s)	675, 1226, 2265
Bso31I	GGTCTC	1 cut(s)	788
Bsp119I	TTCGAA	1 cut(s)	1498
Bsp1286I	GDGCHC	3 cut(s)	228, 1194, 1332
Bsp1407I	TGTACA	1 cut(s)	1125
Bsp143I	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
Bsp1720I	GCTNAGC	3 cut(s)	126, 222, 2106
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	3 cut(s)	675, 1226, 2265
BspDI	ATCGAT	1 cut(s)	1145
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	3 cut(s)	280, 831, 2374
BspLI	GGNNCC	7 cut(s)	308, 457, 685, 1225, 1576, 1659, 2148
BspMAI	CTGCAG	5 cut(s)	841, 922, 1017, 2352, 2395
BspPI	GGATC	2 cut(s)	559, 1181
BspT104I	TTCGAA	1 cut(s)	1498
BspT107I	GGYRCC	1 cut(s)	1574
BspTI	CTTAAG	1 cut(s)	1738
BspTNI	GGTCTC	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	1125
BsrI	ACTGG	5 cut(s)	1237, 1701, 1965, 2135, 2331
BssECI	CCNNGG	1 cut(s)	1887
BssMI	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	1 cut(s)	1887
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	499, 688, 1310, 1579
Bst6I	CTCTTC	4 cut(s)	216, 349, 410, 1060
BstAFI	CTTAAG	1 cut(s)	1738
BstAUI	TGTACA	1 cut(s)	1125
BstBI	TTCGAA	1 cut(s)	1498
BstC8I	GCNNGC	3 cut(s)	582, 1723, 2112
BstF5I	GGATG	3 cut(s)	918, 1372, 1825
BstFNI	CGCG	1 cut(s)	824
BstHHI	GCGC	3 cut(s)	472, 889, 1539
BstKTI	GATC	8 cut(s)	554, 869, 928, 994, 1176, 1955, 1977, 2244
BstMAI	GTCTC	3 cut(s)	788, 1057, 1111
BstMBI	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 476, 520, 1403, 2111
BstNI	CCWGG	1 cut(s)	423
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	9 cut(s)	517, 756, 837, 870, 918, 939, 1013, 2348, 2391
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	7 cut(s)	498, 851, 999, 1939, 2021, 2334, 2405
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
Bsu15I	ATCGAT	1 cut(s)	1145
Bsu36I	CCTNAGG	1 cut(s)	678
BsuI	GTATCC	3 cut(s)	886, 1555, 2069
BsuRI	GGCC	3 cut(s)	675, 1226, 2265
BsuTUI	ATCGAT	1 cut(s)	1145
BtsCI	GGATG	3 cut(s)	918, 1372, 1825
BtsI	GCAGTG	1 cut(s)	1022
BtsIMutI	CAGTG	2 cut(s)	1022, 1708
Cac8I	GCNNGC	3 cut(s)	582, 1723, 2112
CaiI	CAGNNNCTG	3 cut(s)	482, 2209, 2309
CciI	TCATGA	3 cut(s)	280, 831, 2374
CfoI	GCGC	3 cut(s)	472, 889, 1539
Cfr13I	GGNCC	5 cut(s)	456, 674, 1224, 1658, 1698
ClaI	ATCGAT	1 cut(s)	1145
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	8 cut(s)	18, 848, 1126, 1166, 1421, 1447, 1575, 2207
CviAII	CATG	9 cut(s)	215, 281, 695, 832, 1129, 1204, 1324, 1558, 2375
CviQI	GTAC	8 cut(s)	18, 848, 1126, 1166, 1421, 1447, 1575, 2207
DpnI	GATC	8 cut(s)	553, 868, 927, 993, 1175, 1954, 1976, 2243
DpnII	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
DriI	GACNNNNNGTC	1 cut(s)	1656
EaeI	YGGCCR	1 cut(s)	2263
Eam1104I	CTCTTC	4 cut(s)	216, 349, 410, 1060
Eam1105I	GACNNNNNGTC	1 cut(s)	1656
EarI	CTCTTC	4 cut(s)	216, 349, 410, 1060
Eco130I	CCWWGG	1 cut(s)	1887
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	788
Eco47I	GGWCC	3 cut(s)	456, 1658, 1698
Eco57I	CTGAAG	4 cut(s)	55, 456, 459, 2436
Eco81I	CCTNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	1887
EcoT22I	ATGCAT	1 cut(s)	1152
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	1887
Esp3I	CGTCTC	1 cut(s)	1111
FaeI	CATG	9 cut(s)	218, 284, 698, 835, 1132, 1207, 1327, 1561, 2378
FalI	AAGNNNNNCTT	6 cut(s)	222, 254, 1179, 1211, 1192, 1224
FaqI	GGGAC	1 cut(s)	1836
FatI	CATG	9 cut(s)	214, 280, 694, 831, 1128, 1203, 1323, 1557, 2374
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	7 cut(s)	512, 840, 1013, 1928, 2010, 2348, 2394
FokI	GGATG	3 cut(s)	925, 1379, 1812
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	512, 840, 1013, 1928, 2010, 2348, 2394
FspBI	CTAG	5 cut(s)	78, 1773, 1845, 2165, 2463
GlaI	GCGC	3 cut(s)	471, 888, 1538
GluI	GCNGC	7 cut(s)	512, 840, 1013, 1928, 2010, 2348, 2394
GsaI	CCCAGC	1 cut(s)	2045
GsuI	CTGGAG	3 cut(s)	864, 2022, 2427
HaeIII	GGCC	3 cut(s)	675, 1226, 2265
HapII	CCGG	1 cut(s)	1534
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	3 cut(s)	472, 889, 1539
Hin1II	CATG	9 cut(s)	218, 284, 698, 835, 1132, 1207, 1327, 1561, 2378
Hin6I	GCGC	3 cut(s)	470, 887, 1537
HinP1I	GCGC	3 cut(s)	470, 887, 1537
HincII	GTYRAC	4 cut(s)	1098, 1313, 1645, 2197
HindII	GTYRAC	4 cut(s)	1098, 1313, 1645, 2197
HindIII	AAGCTT	2 cut(s)	117, 236
HpaII	CCGG	1 cut(s)	1534
HphI	GGTGA	2 cut(s)	334, 2419
Hpy166II	GTNNAC	6 cut(s)	563, 1098, 1313, 1547, 1645, 2197
Hpy188I	TCNGA	6 cut(s)	436, 484, 930, 1897, 2146, 2311
Hpy8I	GTNNAC	6 cut(s)	563, 1098, 1313, 1547, 1645, 2197
HpyAV	CCTTC	3 cut(s)	431, 483, 1126
HpyCH4III	ACNGT	4 cut(s)	499, 688, 1310, 1579
HpyCH4IV	ACGT	2 cut(s)	1120, 1315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 476, 520, 1403, 2111
HpySE526I	ACGT	2 cut(s)	1120, 1315
Hsp92II	CATG	9 cut(s)	218, 284, 698, 835, 1132, 1207, 1327, 1561, 2378
HspAI	GCGC	3 cut(s)	470, 887, 1537
KpnI	GGTACC	1 cut(s)	1578
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
LmnI	GCTCC	5 cut(s)	312, 1327, 1804, 1924, 2146
Lsp1109I	GCAGC	7 cut(s)	498, 851, 999, 1939, 2021, 2334, 2405
LweI	GCATC	2 cut(s)	1137, 1859
MaeI	CTAG	5 cut(s)	78, 1773, 1845, 2165, 2463
MaeII	ACGT	2 cut(s)	1120, 1315
MaeIII	GTNAC	4 cut(s)	628, 1061, 1438, 2317
MalI	GATC	8 cut(s)	553, 868, 927, 993, 1175, 1954, 1976, 2243
MboI	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
MfeI	CAATTG	1 cut(s)	1481
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	3 cut(s)	228, 1194, 1332
MlsI	TGGCCA	1 cut(s)	2265
MluNI	TGGCCA	1 cut(s)	2265
MlyI	GAGTC	9 cut(s)	181, 416, 420, 427, 944, 1093, 1409, 1752, 2434
MmeI	TCCRAC	3 cut(s)	169, 1775, 1826
Mox20I	TGGCCA	1 cut(s)	2265
Mph1103I	ATGCAT	1 cut(s)	1152
MroXI	GAANNNNTTC	3 cut(s)	441, 688, 1996
MscI	TGGCCA	1 cut(s)	2265
MseI	TTAA	8 cut(s)	768, 953, 983, 1212, 1467, 1739, 1919, 2453
MslI	CAYNNNNRTG	2 cut(s)	1830, 2432
Msp20I	TGGCCA	1 cut(s)	2265
MspA1I	CMGCKG	4 cut(s)	365, 842, 2012, 2239
MspCI	CTTAAG	1 cut(s)	1738
MspI	CCGG	1 cut(s)	1534
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	1481
Mva1269I	GAATGC	2 cut(s)	1539, 1871
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	5 cut(s)	98, 476, 520, 1403, 2111
NdeII	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
NlaIII	CATG	9 cut(s)	218, 284, 698, 835, 1132, 1207, 1327, 1561, 2378
NlaIV	GGNNCC	7 cut(s)	308, 457, 685, 1225, 1576, 1659, 2148
NmuCI	GTSAC	2 cut(s)	1061, 1438
NsiI	ATGCAT	1 cut(s)	1152
NspV	TTCGAA	1 cut(s)	1498
PagI	TCATGA	3 cut(s)	280, 831, 2374
PctI	GAATGC	2 cut(s)	1539, 1871
PdmI	GAANNNNTTC	3 cut(s)	441, 688, 1996
PflMI	CCANNNNNTGG	1 cut(s)	2068
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	7 cut(s)	513, 841, 1014, 1929, 2011, 2349, 2395
PleI	GAGTC	9 cut(s)	181, 415, 420, 426, 943, 1093, 1408, 1751, 2434
PpsI	GAGTC	9 cut(s)	181, 415, 420, 426, 943, 1093, 1408, 1751, 2434
PpuMI	RGGWCCY	1 cut(s)	456
PshAI	GACNNNNGTC	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	2041
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	7 cut(s)	308, 457, 685, 1225, 1576, 1659, 2148
PspPI	GGNCC	5 cut(s)	456, 674, 1224, 1658, 1698
PspPPI	RGGWCCY	1 cut(s)	456
PstI	CTGCAG	5 cut(s)	841, 922, 1017, 2352, 2395
PstNI	CAGNNNCTG	3 cut(s)	482, 2209, 2309
PsuI	RGATCY	1 cut(s)	866
PvuII	CAGCTG	4 cut(s)	365, 842, 2012, 2239
RsaI	GTAC	8 cut(s)	19, 849, 1127, 1167, 1422, 1448, 1576, 2208
RsaNI	GTAC	8 cut(s)	18, 848, 1126, 1166, 1421, 1447, 1575, 2207
RseI	CAYNNNNRTG	2 cut(s)	1830, 2432
SaqAI	TTAA	8 cut(s)	768, 953, 983, 1212, 1467, 1739, 1919, 2453
SatI	GCNGC	7 cut(s)	512, 840, 1013, 1928, 2010, 2348, 2394
Sau3AI	GATC	8 cut(s)	551, 866, 925, 991, 1173, 1952, 1974, 2241
Sau96I	GGNCC	5 cut(s)	456, 674, 1224, 1658, 1698
ScaI	AGTACT	2 cut(s)	19, 849
SchI	GAGTC	9 cut(s)	181, 416, 420, 427, 944, 1093, 1409, 1752, 2434
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	3 cut(s)	228, 1194, 1332
SfaNI	GCATC	2 cut(s)	1137, 1859
SfcI	CTRYAG	9 cut(s)	517, 756, 837, 870, 918, 939, 1013, 2348, 2391
SfuI	TTCGAA	1 cut(s)	1498
SinI	GGWCC	3 cut(s)	456, 1658, 1698
SmiMI	CAYNNNNRTG	2 cut(s)	1830, 2432
SmlI	CTYRAG	2 cut(s)	1114, 1738
SmoI	CTYRAG	2 cut(s)	1114, 1738
SsiI	CCGC	1 cut(s)	824
SspI	AATATT	1 cut(s)	1107
SspMI	CTAG	5 cut(s)	78, 1773, 1845, 2165, 2463
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	1887
TaaI	ACNGT	4 cut(s)	499, 688, 1310, 1579
TaiI	ACGT	2 cut(s)	1123, 1318
TaqI	TCGA	7 cut(s)	491, 1039, 1145, 1498, 1570, 2020, 2476
TatI	WGTACW	5 cut(s)	17, 847, 1125, 1420, 1446
Tru1I	TTAA	8 cut(s)	768, 953, 983, 1212, 1467, 1739, 1919, 2453
Tru9I	TTAA	8 cut(s)	768, 953, 983, 1212, 1467, 1739, 1919, 2453
TscAI	CASTG	2 cut(s)	1022, 1708
TseFI	GTSAC	2 cut(s)	1061, 1438
TseI	GCWGC	7 cut(s)	511, 839, 1012, 1927, 2009, 2347, 2393
Tsp45I	GTSAC	2 cut(s)	1061, 1438
TspGWI	ACGGA	1 cut(s)	1693
TspRI	CASTG	2 cut(s)	1022, 1708
Van91I	CCANNNNNTGG	1 cut(s)	2068
Vha464I	CTTAAG	1 cut(s)	1738
VpaK11BI	GGWCC	3 cut(s)	456, 1658, 1698
VspI	ATTAAT	1 cut(s)	768
XapI	RAATTY	2 cut(s)	1456, 1463
XbaI	TCTAGA	1 cut(s)	77
XmnI	GAANNNNTTC	3 cut(s)	441, 688, 1996
XspI	CTAG	5 cut(s)	78, 1773, 1845, 2165, 2463
ZrmI	AGTACT	2 cut(s)	19, 849
Zsp2I	ATGCAT	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.