Rw4G007350

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
15433483 .. 15437278
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007350.1

Sequence Viewer

Length: 1869 bp
ATGGCAAAAGCAGGGAGTACTCTTTTTCTTGAAGATTGGCTGAGAACTGTGAGTGGCTATGGCAATAGCTTCAGCTCTAGAAACTACTCAGCCTCATCTGCAAGAGCCATAATTCAAGCTTGGGCTGAGCTTAGAGACTCCCTCCAACACCAATCATTTCAATCCCATCATCTTCAATCTCTAAAGACTCTTGTCAATTCCCAGACTTCTCTTCATGTTGCTGAGCCCCAAGCAAAGCTTCTGCTTTCAATTCTGTCCTCTCCAAACCTTTTTCTTCCTCATGAATCCTATACTCTCTTTCTCAGGCTCCTCTATATATGGGTCAGGAAATCTGCCAGACCCTCTTCGGTTCTCGTTGATTCAGCTGTGGAGGTTCTTTCCAACCTATTTTCTTCAACCCAATATGATTCAATGAAGAGTCCAGGACTCTTTTCTGAAGGTGTTCTCCTTTTGGGGTCATTTTCTTTTGCGCCTTCAGCGTCTGAAAACTCGAAAACCGTCTGCTTAGAGCTGCTCTGTAGGCTGTTGGGAGAGGAGTATCAGGTGCTTGGATCATTTAGTGGACTAATTCCAGAAGTGCTTGCTGGAATTGGGTATGCTTTATCTTCTTCCAAGAGTGTTCATTTTGTTACAATTTTGGATTTTGTGTTGAGTATTTGGGGTAAGGAAAGTGGCCCTCAGGGAACCGTCTCTCATGGGCTGATGGTTCTGCATTTGATGGAATGGGTATTGTCTGGTTTGAGCAATTTTCGTTCTGTAGAGAAAATTAATACTCTTTGTAGGGAGGCTTTAGAGACCTTAAAACCAAACTATGTTCCATTCGCGGTTGTCATGACTGCAGCTGGAGTACTGAGGGCTTTGAATAGATCTGTAGTGAGAGGTCTTGCGCTGGATACTATTTCCAAACTGAGGATGTCTGCAGAAGATCGGATAGAGTCTGTAGCAAGAGAGTTGATTTCAAGAACGAGAGGATTTACGGGTTTAAGTCATGATCACACAGTTAGTCTTTTGCTGCAGTGTGTTGCAGTAGCATTGGCTCGAAGTGGTGTTGTCTCTTCTCGTGACCCTTTGTTTGTCTGCCTTGCTTCTGCATTGTTGACTGAAATATTTCCCTTGAGACGTTTGTACATGAAGGTATTGGAATCGATGCATAGCAGTTCAGCCGTACTGAGGATCAATGAGGTCAAAGAACACCTTGAAAGCATGACTTTTAAGGAAGCAGGAGCCATAACTGGTGTTTTCTGCAATCTGTATGTTTCAGTAGATGAAAAAAGCCAATACATAGTGGAGAATCTTATATGGGATTACTGTCAATGTATATACATGGAGCACCGACAGGTCGCTTTGATTCTTCGTGGTAAAGAGGATGAATTACTTGGAGATATGGAGAAAATTGCTGAGTCTGCTTTTCTTATGGTTGTACTCTTTGCGTCGGCAGTCACAAAGTACAAGCTAAATTCAAAATTTAACCCCGAAACTCAATTGGATATATCAGTTCGAATACTTATTTCATTTTCTTGTGTTGAGTATTTCCGGCGCATTCGTTTACCAGAATACATGGATACTATTCGAGGTACCGTTGTGAGTGTTCAGGAAAGTGATTCTGCTTGTGTGTCTTTCGTAAAATCCATTCCAGCTTATGTTGACTTGACACAGGGTCCAGATTTTTCTTTCCTACGGAAAATGGAATATGTGTGGTCTAGTGATGAGGTTCAAACTGCTCGCATATTGTTCTACTTAAGAGTCATTCCAACTTGCATCGGACGACTGCCTAGCTCTGTATTTGGAAAAGTGGTTGCTCCAACTATGTTCTTGTATCCTATACTGAATAACTTACTCTTTGGGGACCTTTTATATTGCATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

622

Amino Acids

69.4

Weight (kDa)

6.9

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1574
AccB1I GGYRCC 1 cut(s) 1574
AccII CGCG 1 cut(s) 824
AciI CCGC 1 cut(s) 824
AclWI GGATC 2 cut(s) 559, 1181
AcsI RAATTY 2 cut(s) 1456, 1463
AcuI CTGAAG 3 cut(s) 55, 456, 459
AfaI GTAC 7 cut(s) 19, 849, 1127, 1167, 1422, 1448, 1576
AfiI CCNNNNNNNGG 2 cut(s) 909, 1170
AflII CTTAAG 1 cut(s) 1738
AhdI GACNNNNNGTC 1 cut(s) 1656
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
Alw21I GWGCWC 1 cut(s) 1332
Alw26I GTCTC 5 cut(s) 129, 694, 788, 1057, 1111
AlwI GGATC 2 cut(s) 559, 1181
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 3 cut(s) 511, 839, 1012
ApoI RAATTY 2 cut(s) 1456, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 1055, 1087
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 2 cut(s) 441, 1107
Asp718I GGTACC 1 cut(s) 1574
AspLEI GCGC 3 cut(s) 472, 889, 1539
AspS9I GGNCC 3 cut(s) 674, 1658, 1846
AsuII TTCGAA 1 cut(s) 1498
AvaII GGWCC 2 cut(s) 1658, 1846
AxyI CCTNAGG 1 cut(s) 678
BaeI ACNNNNGTAYC 2 cut(s) 1566, 1599
BanI GGYRCC 1 cut(s) 1574
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 1059
Bbv12I GWGCWC 1 cut(s) 1332
BbvI GCAGC 3 cut(s) 498, 851, 999
BccI CCATC 3 cut(s) 174, 697, 712
BceAI ACGGC 1 cut(s) 1148
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 3 cut(s) 886, 1555, 1827
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 5 cut(s) 129, 694, 788, 1057, 1111
BfaI CTAG 3 cut(s) 78, 1701, 1773
BfmI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
BfrI CTTAAG 1 cut(s) 1738
BfuI GTATCC 3 cut(s) 886, 1555, 1827
BglII AGATCT 1 cut(s) 866
BisI GCNGC 3 cut(s) 512, 840, 1013
BlpI GCTNAGC 2 cut(s) 126, 222
BlsI GCNGC 3 cut(s) 513, 841, 1014
BmcAI AGTACT 2 cut(s) 19, 849
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 1658, 1846
BmeRI GACNNNNNGTC 1 cut(s) 1656
BmgT120I GGNCC 3 cut(s) 674, 1658, 1846
BmiI GGNNCC 6 cut(s) 308, 685, 1225, 1576, 1659, 1847
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 1137, 1767
BoxI GACNNNNGTC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 864
Bpu1102I GCTNAGC 2 cut(s) 126, 222
Bpu14I TTCGAA 1 cut(s) 1498
BpuEI CTTGAG 1 cut(s) 1135
Bsa29I ATCGAT 1 cut(s) 1145
BsaI GGTCTC 1 cut(s) 788
Bsc4I CCNNNNNNNGG 2 cut(s) 909, 1170
Bse1I ACTGG 1 cut(s) 1237
Bse21I CCTNAGG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 423
BseCI ATCGAT 1 cut(s) 1145
BseGI GGATG 2 cut(s) 918, 1372
BseLI CCNNNNNNNGG 2 cut(s) 909, 1170
BseNI ACTGG 1 cut(s) 1237
BseRI GAGGAG 2 cut(s) 299, 548
BseXI GCAGC 3 cut(s) 498, 851, 999
Bsh1236I CGCG 1 cut(s) 824
BshFI GGCC 1 cut(s) 675
BshNI GGYRCC 1 cut(s) 1574
BshVI ATCGAT 1 cut(s) 1145
BsiHKAI GWGCWC 1 cut(s) 1332
BsiSI CCGG 1 cut(s) 1534
BslFI GGGAC 1 cut(s) 1859
BslI CCNNNNNNNGG 2 cut(s) 909, 1170
BsmAI GTCTC 5 cut(s) 129, 694, 788, 1057, 1111
BsmBI CGTCTC 2 cut(s) 694, 1111
BsmFI GGGAC 1 cut(s) 1859
BsmI GAATGC 1 cut(s) 1539
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 788
Bsp119I TTCGAA 1 cut(s) 1498
Bsp1286I GDGCHC 2 cut(s) 228, 1332
Bsp1407I TGTACA 1 cut(s) 1125
Bsp143I GATC 5 cut(s) 551, 866, 925, 991, 1173
Bsp1720I GCTNAGC 2 cut(s) 126, 222
BspACI CCGC 1 cut(s) 824
BspANI GGCC 1 cut(s) 675
BspDI ATCGAT 1 cut(s) 1145
BspFNI CGCG 1 cut(s) 824
BspHI TCATGA 3 cut(s) 280, 831, 988
BspLI GGNNCC 6 cut(s) 308, 685, 1225, 1576, 1659, 1847
BspMAI CTGCAG 3 cut(s) 841, 922, 1017
BspPI GGATC 2 cut(s) 559, 1181
BspT104I TTCGAA 1 cut(s) 1498
BspT107I GGYRCC 1 cut(s) 1574
BspTI CTTAAG 1 cut(s) 1738
BspTNI GGTCTC 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 1125
BsrI ACTGG 1 cut(s) 1237
BssMI GATC 5 cut(s) 551, 866, 925, 991, 1173
BssSI CACGAG 1 cut(s) 1059
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 6 cut(s) 49, 499, 688, 1000, 1310, 1579
Bst6I CTCTTC 4 cut(s) 216, 349, 410, 1060
BstAFI CTTAAG 1 cut(s) 1738
BstAUI TGTACA 1 cut(s) 1125
BstBI TTCGAA 1 cut(s) 1498
BstC8I GCNNGC 2 cut(s) 582, 1723
BstF5I GGATG 2 cut(s) 918, 1372
BstFNI CGCG 1 cut(s) 824
BstHHI GCGC 3 cut(s) 472, 889, 1539
BstKTI GATC 5 cut(s) 554, 869, 928, 994, 1176
BstMAI GTCTC 5 cut(s) 129, 694, 788, 1057, 1111
BstMBI GATC 5 cut(s) 551, 866, 925, 991, 1173
BstMWI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
BstNI CCWGG 1 cut(s) 423
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 3 cut(s) 498, 851, 999
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
Bsu15I ATCGAT 1 cut(s) 1145
Bsu36I CCTNAGG 1 cut(s) 678
BsuI GTATCC 3 cut(s) 886, 1555, 1827
BsuRI GGCC 1 cut(s) 675
BsuTUI ATCGAT 1 cut(s) 1145
BtsCI GGATG 2 cut(s) 918, 1372
BtsI GCAGTG 1 cut(s) 1022
BtsIMutI CAGTG 1 cut(s) 1022
Cac8I GCNNGC 2 cut(s) 582, 1723
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 3 cut(s) 280, 831, 988
CfoI GCGC 3 cut(s) 472, 889, 1539
Cfr13I GGNCC 3 cut(s) 674, 1658, 1846
ClaI ATCGAT 1 cut(s) 1145
CseI GACGC 2 cut(s) 468, 1419
Csp6I GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
CviAII CATG 9 cut(s) 215, 281, 695, 832, 989, 1129, 1204, 1324, 1558
CviQI GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
DpnI GATC 5 cut(s) 553, 868, 927, 993, 1175
DpnII GATC 5 cut(s) 551, 866, 925, 991, 1173
DriI GACNNNNNGTC 1 cut(s) 1656
Eam1104I CTCTTC 4 cut(s) 216, 349, 410, 1060
Eam1105I GACNNNNNGTC 1 cut(s) 1656
EarI CTCTTC 4 cut(s) 216, 349, 410, 1060
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 2 cut(s) 1658, 1846
Eco57I CTGAAG 3 cut(s) 55, 456, 459
Eco81I CCTNAGG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 1846
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 1152
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 2 cut(s) 694, 1111
FaeI CATG 9 cut(s) 218, 284, 698, 835, 992, 1132, 1207, 1327, 1561
FalI AAGNNNNNCTT 6 cut(s) 222, 254, 1179, 1211, 1192, 1224
FaqI GGGAC 1 cut(s) 1859
FatI CATG 9 cut(s) 214, 280, 694, 831, 988, 1128, 1203, 1323, 1557
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 3 cut(s) 512, 840, 1013
FokI GGATG 2 cut(s) 925, 1379
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 512, 840, 1013
FspBI CTAG 3 cut(s) 78, 1701, 1773
GlaI GCGC 3 cut(s) 471, 888, 1538
GluI GCNGC 3 cut(s) 512, 840, 1013
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 1 cut(s) 675
HapII CCGG 1 cut(s) 1534
HgaI GACGC 2 cut(s) 468, 1419
HhaI GCGC 3 cut(s) 472, 889, 1539
Hin1II CATG 9 cut(s) 218, 284, 698, 835, 992, 1132, 1207, 1327, 1561
Hin6I GCGC 3 cut(s) 470, 887, 1537
HinP1I GCGC 3 cut(s) 470, 887, 1537
HincII GTYRAC 2 cut(s) 1098, 1645
HindII GTYRAC 2 cut(s) 1098, 1645
HindIII AAGCTT 2 cut(s) 117, 236
HpaII CCGG 1 cut(s) 1534
Hpy166II GTNNAC 4 cut(s) 563, 1098, 1547, 1645
Hpy188I TCNGA 4 cut(s) 436, 484, 930, 1763
Hpy8I GTNNAC 4 cut(s) 563, 1098, 1547, 1645
Hpy99I CGWCG 1 cut(s) 1435
HpyAV CCTTC 3 cut(s) 431, 483, 1126
HpyCH4III ACNGT 6 cut(s) 49, 499, 688, 1000, 1310, 1579
HpyCH4IV ACGT 1 cut(s) 1120
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
HpySE526I ACGT 1 cut(s) 1120
Hsp92II CATG 9 cut(s) 218, 284, 698, 835, 992, 1132, 1207, 1327, 1561
HspAI GCGC 3 cut(s) 470, 887, 1537
KpnI GGTACC 1 cut(s) 1578
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 5 cut(s) 551, 866, 925, 991, 1173
LmnI GCTCC 4 cut(s) 312, 1223, 1327, 1804
Lsp1109I GCAGC 3 cut(s) 498, 851, 999
LweI GCATC 2 cut(s) 1137, 1767
MaeI CTAG 3 cut(s) 78, 1701, 1773
MaeII ACGT 1 cut(s) 1120
MaeIII GTNAC 3 cut(s) 628, 1061, 1438
MalI GATC 5 cut(s) 553, 868, 927, 993, 1175
MboI GATC 5 cut(s) 551, 866, 925, 991, 1173
MfeI CAATTG 1 cut(s) 1481
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 2 cut(s) 228, 1332
MlyI GAGTC 7 cut(s) 131, 181, 420, 427, 944, 1409, 1752
MmeI TCCRAC 4 cut(s) 169, 405, 1775, 1826
Mph1103I ATGCAT 1 cut(s) 1152
MroXI GAANNNNTTC 2 cut(s) 441, 1107
MseI TTAA 6 cut(s) 768, 800, 983, 1212, 1467, 1739
MspA1I CMGCKG 2 cut(s) 365, 842
MspCI CTTAAG 1 cut(s) 1738
MspI CCGG 1 cut(s) 1534
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 1481
Mva1269I GAATGC 1 cut(s) 1539
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
NdeII GATC 5 cut(s) 551, 866, 925, 991, 1173
NlaIII CATG 9 cut(s) 218, 284, 698, 835, 992, 1132, 1207, 1327, 1561
NlaIV GGNNCC 6 cut(s) 308, 685, 1225, 1576, 1659, 1847
NmuCI GTSAC 2 cut(s) 1061, 1438
NsiI ATGCAT 1 cut(s) 1152
NspV TTCGAA 1 cut(s) 1498
PagI TCATGA 3 cut(s) 280, 831, 988
PctI GAATGC 1 cut(s) 1539
PdmI GAANNNNTTC 2 cut(s) 441, 1107
PfeI GAWTC 7 cut(s) 284, 359, 407, 1142, 1291, 1348, 1601
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 3 cut(s) 513, 841, 1014
PleI GAGTC 7 cut(s) 131, 181, 420, 426, 943, 1408, 1751
PpsI GAGTC 7 cut(s) 131, 181, 420, 426, 943, 1408, 1751
PpuMI RGGWCCY 1 cut(s) 1846
PshAI GACNNNNGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 1846
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 6 cut(s) 308, 685, 1225, 1576, 1659, 1847
PspPI GGNCC 3 cut(s) 674, 1658, 1846
PspPPI RGGWCCY 1 cut(s) 1846
PstI CTGCAG 3 cut(s) 841, 922, 1017
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 866
PvuII CAGCTG 2 cut(s) 365, 842
RsaI GTAC 7 cut(s) 19, 849, 1127, 1167, 1422, 1448, 1576
RsaNI GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
SaqAI TTAA 6 cut(s) 768, 800, 983, 1212, 1467, 1739
SatI GCNGC 3 cut(s) 512, 840, 1013
Sau3AI GATC 5 cut(s) 551, 866, 925, 991, 1173
Sau96I GGNCC 3 cut(s) 674, 1658, 1846
ScaI AGTACT 2 cut(s) 19, 849
SchI GAGTC 7 cut(s) 131, 181, 420, 427, 944, 1409, 1752
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 2 cut(s) 228, 1332
SfaNI GCATC 2 cut(s) 1137, 1767
SfcI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
SfuI TTCGAA 1 cut(s) 1498
SinI GGWCC 2 cut(s) 1658, 1846
SmlI CTYRAG 2 cut(s) 1114, 1738
SmoI CTYRAG 2 cut(s) 1114, 1738
SsiI CCGC 1 cut(s) 824
SspI AATATT 1 cut(s) 1107
SspMI CTAG 3 cut(s) 78, 1701, 1773
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 6 cut(s) 49, 499, 688, 1000, 1310, 1579
TaiI ACGT 1 cut(s) 1123
TaqI TCGA 5 cut(s) 491, 1039, 1145, 1498, 1570
TatI WGTACW 5 cut(s) 17, 847, 1125, 1420, 1446
TfiI GAWTC 7 cut(s) 284, 359, 407, 1142, 1291, 1348, 1601
Tru1I TTAA 6 cut(s) 768, 800, 983, 1212, 1467, 1739
Tru9I TTAA 6 cut(s) 768, 800, 983, 1212, 1467, 1739
TscAI CASTG 1 cut(s) 1022
TseFI GTSAC 2 cut(s) 1061, 1438
TseI GCWGC 3 cut(s) 511, 839, 1012
Tsp45I GTSAC 2 cut(s) 1061, 1438
TspDTI ATGAA 8 cut(s) 203, 297, 428, 611, 1145, 1281, 1383, 1500
TspGWI ACGGA 1 cut(s) 1693
TspRI CASTG 1 cut(s) 1022
Vha464I CTTAAG 1 cut(s) 1738
VpaK11BI GGWCC 2 cut(s) 1658, 1846
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 1456, 1463
XbaI TCTAGA 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 441, 1107
XspI CTAG 3 cut(s) 78, 1701, 1773
ZrmI AGTACT 2 cut(s) 19, 849
Zsp2I ATGCAT 1 cut(s) 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.