Rh7BG226400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
19529519 .. 19534022
4504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG226400.1

Sequence Viewer

Length: 1821 bp
ATGGCAAAAGCAGGGAGTACTCTTTTTCTTGAAGATTGGCTGAGAAGTGTGAGTGGCTATGGCAATAGCTTCAGCTCTAGAAACTACTCAGCCTCATCTGCAAGAGCCATAATTCAAGCTTGGGCTGAGCTTAGAGACTCCCTCCAACACCAATCATTTCAATCCCATCATCTTCAATCTCTAAAGACTCTTGTCAATTCCCAGACTTCTCTTCATGTTTCTGAGCCCCAAGCAAAGCTTCTGCTTTCAATTCTGTCCTCTCCAAACCTTTGTCTTCCTCATGAATCCTATACTCTCTTTCTCAGGCTCCTCTATATATGGGTCAGGAAATCTGCCAGACCTTCTTCGGTTCTTGTTGATTCAGCTGTGGAGGTTCTTTCCAACCTATTTTCTTCAACCCAATATGAGTCAAAGAAGAGTCCAGGACTCTTTTCTGAAGGTGTTCTCCTTTTGGGGTCCTTTTCTTTTGCGCCTTCAGCGTCTGAAAACTCGAAAACTGTCTGCTTAGAGCTGCTCTGTAGGCTGTTGGGAGAGGAGTATCAGGCGCTTGGATCATTTAGTGGACTAATTCCAGAAGTGCTTGCTGGAATTGGGTATGCTTTATCTTCTTCCAAGAGTGTTCATTTTGTTACAATTTTGGATTTTGTGTTGAGTATTTGGGGTAAGGAAAGTGGCCCTCAGGGAACCGTTTCTCATGGGCTGATGGTTCTGCATTTGATGGAATGGGTATTGTCTGGTTTGAGCAATTTTCGTTCTGTAGAGAAAATTAATACTCTTTGTAGGGAGGCTTTAGAGACCTCAAAACCAAACTATGTTCCATTTGCGGTTGTCATGACTGCAGCTGGAGTACTGAGGGCTTTGAATAGATCTGTAGTGAGAGGTCTTGCGCTGGATACTATTTCCAAACTGAGGATGTCTGCAGAAGATCGGATAGAGTCTGTAGCAAGAGAGTTGATTTCAAGAACGAGAGGATTTACAGGTTTAAGTTATGATCACTCAGTTAGTCTTTTGCTGCAGTGTGTTGCAGTAGCATTGGCTCGAAGTGGTGTTGTCTCTTCTCGTGACCCTTTGTTTGTCTGCCTTGCTTCTGCATTGTTGACTGAAATATTTCCCTTGAGACGTTTGTACATGAAGGTATTGGAATCGATGCATAGCAGTTCAGCCGTACTGAGGATCAATGAGGTCAAAGAACACCTTGAAAGCATGACTTTTAAGGAAGCAGGAGCCATAACTGGTGTTTTCTGCAATCTGTATGTTTCAGTAGATGAAAAAAGCCAATACATAGTGGAGAATCTTATATGGGATTACTGTCAATGTATATACATGGAGCACCGACAGGTCGCTTTGATTCTTCGTGGTAAAGAGGATGAATTACTTGGAGATATGGAGAAAATTGCTGAGTCTGCTTTTCTTATGGTTGTACTCTTTGCGTCGGCAGTCACAAAGTACAAGCTAAATTCAAAATTTAACCCCGAAACTCAATTGGATATATCAGTTCGAATACTTATTTCATTTTCTTGTGTTGAGTATTTCCGGCGCATTCGTTTACCAGAATACATGGATACTATTCGAGGTACTGTTGTGAGTGTTCAGGAAAGTGATTCTGCTTGTGTGTCTTTCGTAAAATCCATTCCAGCTTATGTTGACTTGACACAGGGTCCAGATTTTTCTTTCCTCAGAACCATGCAGTATAAGAAAATGGTGAAGGGATTGCCTCAACTTAAAACCACATACAAGCTGTGCACAAACTACATGGTAGGGAAGCAGCACCGAGATGCAATACCAAAGAAGAGCAAGTGGAGAGCATCACAAAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

606

Amino Acids

67.63

Weight (kDa)

8.89

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 824
AclWI GGATC 2 cut(s) 559, 1181
AcsI RAATTY 2 cut(s) 1456, 1463
AcuI CTGAAG 3 cut(s) 55, 456, 459
AfaI GTAC 7 cut(s) 19, 849, 1127, 1167, 1422, 1448, 1576
AfiI CCNNNNNNNGG 2 cut(s) 909, 1170
AhdI GACNNNNNGTC 1 cut(s) 1656
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
Alw21I GWGCWC 2 cut(s) 1332, 1745
Alw26I GTCTC 4 cut(s) 129, 788, 1057, 1111
Alw44I GTGCAC 1 cut(s) 1741
AlwI GGATC 2 cut(s) 559, 1181
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 673
ApaLI GTGCAC 1 cut(s) 1741
ApeKI GCWGC 4 cut(s) 511, 839, 1012, 1765
ApoI RAATTY 2 cut(s) 1456, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 1055, 1087
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 3 cut(s) 441, 688, 1107
AspLEI GCGC 4 cut(s) 472, 547, 889, 1539
AspS9I GGNCC 3 cut(s) 456, 674, 1658
AsuHPI GGTGA 1 cut(s) 1714
AsuII TTCGAA 1 cut(s) 1498
AvaII GGWCC 2 cut(s) 456, 1658
AxyI CCTNAGG 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 1745
BaeI ACNNNNGTAYC 2 cut(s) 1566, 1599
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 2 cut(s) 1332, 1745
BbvI GCAGC 4 cut(s) 498, 851, 999, 1777
BccI CCATC 3 cut(s) 174, 697, 712
BceAI ACGGC 1 cut(s) 1148
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 2 cut(s) 886, 1555
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 4 cut(s) 129, 788, 1057, 1111
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
BfoI RGCGCY 1 cut(s) 548
BfuI GTATCC 2 cut(s) 886, 1555
BglII AGATCT 1 cut(s) 866
BisI GCNGC 4 cut(s) 512, 840, 1013, 1766
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 4 cut(s) 513, 841, 1014, 1767
BmcAI AGTACT 2 cut(s) 19, 849
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 456, 1658
BmeRI GACNNNNNGTC 1 cut(s) 1656
BmgT120I GGNCC 3 cut(s) 456, 674, 1658
BmiI GGNNCC 5 cut(s) 308, 457, 685, 1225, 1659
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 1137, 1765, 1814
BoxI GACNNNNGTC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 864
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 1498
BpuEI CTTGAG 1 cut(s) 1135
Bsa29I ATCGAT 1 cut(s) 1145
BsaI GGTCTC 1 cut(s) 788
Bsc4I CCNNNNNNNGG 2 cut(s) 909, 1170
Bse1I ACTGG 1 cut(s) 1237
Bse21I CCTNAGG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 423
BseCI ATCGAT 1 cut(s) 1145
BseGI GGATG 2 cut(s) 918, 1372
BseLI CCNNNNNNNGG 2 cut(s) 909, 1170
BseNI ACTGG 1 cut(s) 1237
BseRI GAGGAG 2 cut(s) 299, 548
BseSI GKGCMC 1 cut(s) 1745
BseXI GCAGC 4 cut(s) 498, 851, 999, 1777
BshFI GGCC 1 cut(s) 675
BshVI ATCGAT 1 cut(s) 1145
BsiHKAI GWGCWC 2 cut(s) 1332, 1745
BsiSI CCGG 1 cut(s) 1534
BslI CCNNNNNNNGG 2 cut(s) 909, 1170
BsmAI GTCTC 4 cut(s) 129, 788, 1057, 1111
BsmBI CGTCTC 1 cut(s) 1111
BsmI GAATGC 1 cut(s) 1539
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 788
Bsp119I TTCGAA 1 cut(s) 1498
Bsp1286I GDGCHC 3 cut(s) 228, 1332, 1745
Bsp1407I TGTACA 1 cut(s) 1125
Bsp143I GATC 5 cut(s) 551, 866, 925, 991, 1173
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 1 cut(s) 824
BspANI GGCC 1 cut(s) 675
BspDI ATCGAT 1 cut(s) 1145
BspHI TCATGA 2 cut(s) 280, 831
BspLI GGNNCC 5 cut(s) 308, 457, 685, 1225, 1659
BspMAI CTGCAG 3 cut(s) 841, 922, 1017
BspPI GGATC 2 cut(s) 559, 1181
BspQI GCTCTTC 1 cut(s) 1784
BspT104I TTCGAA 1 cut(s) 1498
BspTNI GGTCTC 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 1125
BsrI ACTGG 1 cut(s) 1237
BssMI GATC 5 cut(s) 551, 866, 925, 991, 1173
BssSI CACGAG 1 cut(s) 1059
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 4 cut(s) 499, 688, 1310, 1579
Bst6I CTCTTC 4 cut(s) 216, 410, 1060, 1784
BstAUI TGTACA 1 cut(s) 1125
BstBI TTCGAA 1 cut(s) 1498
BstC8I GCNNGC 1 cut(s) 582
BstF5I GGATG 2 cut(s) 918, 1372
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 4 cut(s) 472, 547, 889, 1539
BstKTI GATC 5 cut(s) 554, 869, 928, 994, 1176
BstMAI GTCTC 4 cut(s) 129, 788, 1057, 1111
BstMBI GATC 5 cut(s) 551, 866, 925, 991, 1173
BstMWI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
BstNI CCWGG 1 cut(s) 423
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
BstSLI GKGCMC 1 cut(s) 1745
BstV1I GCAGC 4 cut(s) 498, 851, 999, 1777
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
Bsu15I ATCGAT 1 cut(s) 1145
Bsu36I CCTNAGG 1 cut(s) 678
BsuI GTATCC 2 cut(s) 886, 1555
BsuRI GGCC 1 cut(s) 675
BsuTUI ATCGAT 1 cut(s) 1145
BtsCI GGATG 2 cut(s) 918, 1372
BtsI GCAGTG 1 cut(s) 1022
BtsIMutI CAGTG 1 cut(s) 1022
Cac8I GCNNGC 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 280, 831
CfoI GCGC 4 cut(s) 472, 547, 889, 1539
Cfr13I GGNCC 3 cut(s) 456, 674, 1658
ClaI ATCGAT 1 cut(s) 1145
CseI GACGC 2 cut(s) 468, 1419
Csp6I GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
CviQI GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
DpnI GATC 5 cut(s) 553, 868, 927, 993, 1175
DpnII GATC 5 cut(s) 551, 866, 925, 991, 1173
DriI GACNNNNNGTC 1 cut(s) 1656
Eam1104I CTCTTC 4 cut(s) 216, 410, 1060, 1784
Eam1105I GACNNNNNGTC 1 cut(s) 1656
EarI CTCTTC 4 cut(s) 216, 410, 1060, 1784
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 2 cut(s) 456, 1658
Eco57I CTGAAG 3 cut(s) 55, 456, 459
Eco81I CCTNAGG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 1152
EcoT38I GRGCYC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 1111
FalI AAGNNNNNCTT 6 cut(s) 222, 254, 1179, 1211, 1192, 1224
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 4 cut(s) 512, 840, 1013, 1766
FokI GGATG 2 cut(s) 925, 1379
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 4 cut(s) 512, 840, 1013, 1766
FspBI CTAG 1 cut(s) 78
GlaI GCGC 4 cut(s) 471, 546, 888, 1538
GluI GCNGC 4 cut(s) 512, 840, 1013, 1766
GsuI CTGGAG 1 cut(s) 864
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 1 cut(s) 675
HapII CCGG 1 cut(s) 1534
HgaI GACGC 2 cut(s) 468, 1419
HhaI GCGC 4 cut(s) 472, 547, 889, 1539
Hin6I GCGC 4 cut(s) 470, 545, 887, 1537
HinP1I GCGC 4 cut(s) 470, 545, 887, 1537
HincII GTYRAC 2 cut(s) 1098, 1645
HindII GTYRAC 2 cut(s) 1098, 1645
HindIII AAGCTT 2 cut(s) 117, 236
HpaII CCGG 1 cut(s) 1534
HphI GGTGA 1 cut(s) 1714
Hpy166II GTNNAC 5 cut(s) 563, 1098, 1547, 1645, 1743
Hpy188I TCNGA 5 cut(s) 223, 436, 484, 930, 1679
Hpy8I GTNNAC 5 cut(s) 563, 1098, 1547, 1645, 1743
Hpy99I CGWCG 1 cut(s) 1435
HpyAV CCTTC 5 cut(s) 351, 431, 483, 1126, 1699
HpyCH4III ACNGT 4 cut(s) 499, 688, 1310, 1579
HpyCH4IV ACGT 1 cut(s) 1120
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
HpySE526I ACGT 1 cut(s) 1120
HspAI GCGC 4 cut(s) 470, 545, 887, 1537
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 5 cut(s) 551, 866, 925, 991, 1173
LguI GCTCTTC 1 cut(s) 1784
LmnI GCTCC 3 cut(s) 312, 1223, 1327
Lsp1109I GCAGC 4 cut(s) 498, 851, 999, 1777
LweI GCATC 3 cut(s) 1137, 1765, 1814
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 1120
MaeIII GTNAC 3 cut(s) 628, 1061, 1438
MalI GATC 5 cut(s) 553, 868, 927, 993, 1175
MboI GATC 5 cut(s) 551, 866, 925, 991, 1173
MfeI CAATTG 1 cut(s) 1481
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 3 cut(s) 228, 1332, 1745
MlyI GAGTC 7 cut(s) 131, 181, 416, 420, 427, 944, 1409
MmeI TCCRAC 2 cut(s) 169, 405
Mph1103I ATGCAT 1 cut(s) 1152
MroXI GAANNNNTTC 3 cut(s) 441, 688, 1107
MseI TTAA 5 cut(s) 768, 983, 1212, 1467, 1722
MslI CAYNNNNRTG 1 cut(s) 1773
MspA1I CMGCKG 2 cut(s) 365, 842
MspI CCGG 1 cut(s) 1534
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 1481
Mva1269I GAATGC 1 cut(s) 1539
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 98, 476, 520, 1403
NdeII GATC 5 cut(s) 551, 866, 925, 991, 1173
NlaIV GGNNCC 5 cut(s) 308, 457, 685, 1225, 1659
NmuCI GTSAC 2 cut(s) 1061, 1438
NsiI ATGCAT 1 cut(s) 1152
NspV TTCGAA 1 cut(s) 1498
PagI TCATGA 2 cut(s) 280, 831
PciSI GCTCTTC 1 cut(s) 1784
PctI GAATGC 1 cut(s) 1539
PdmI GAANNNNTTC 3 cut(s) 441, 688, 1107
PfeI GAWTC 6 cut(s) 284, 359, 1142, 1291, 1348, 1601
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 4 cut(s) 513, 841, 1014, 1767
PleI GAGTC 7 cut(s) 131, 181, 415, 420, 426, 943, 1408
PpsI GAGTC 7 cut(s) 131, 181, 415, 420, 426, 943, 1408
PpuMI RGGWCCY 1 cut(s) 456
PshAI GACNNNNGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 5 cut(s) 308, 457, 685, 1225, 1659
PspPI GGNCC 3 cut(s) 456, 674, 1658
PspPPI RGGWCCY 1 cut(s) 456
PstI CTGCAG 3 cut(s) 841, 922, 1017
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 866
PvuII CAGCTG 2 cut(s) 365, 842
RsaI GTAC 7 cut(s) 19, 849, 1127, 1167, 1422, 1448, 1576
RsaNI GTAC 7 cut(s) 18, 848, 1126, 1166, 1421, 1447, 1575
RseI CAYNNNNRTG 1 cut(s) 1773
SapI GCTCTTC 1 cut(s) 1784
SaqAI TTAA 5 cut(s) 768, 983, 1212, 1467, 1722
SatI GCNGC 4 cut(s) 512, 840, 1013, 1766
Sau3AI GATC 5 cut(s) 551, 866, 925, 991, 1173
Sau96I GGNCC 3 cut(s) 456, 674, 1658
ScaI AGTACT 2 cut(s) 19, 849
SchI GAGTC 7 cut(s) 131, 181, 416, 420, 427, 944, 1409
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 3 cut(s) 228, 1332, 1745
SfaNI GCATC 3 cut(s) 1137, 1765, 1814
SfcI CTRYAG 7 cut(s) 517, 756, 837, 870, 918, 939, 1013
SfuI TTCGAA 1 cut(s) 1498
SinI GGWCC 2 cut(s) 456, 1658
SmiMI CAYNNNNRTG 1 cut(s) 1773
SmlI CTYRAG 1 cut(s) 1114
SmoI CTYRAG 1 cut(s) 1114
SsiI CCGC 1 cut(s) 824
SspI AATATT 1 cut(s) 1107
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 4 cut(s) 499, 688, 1310, 1579
TaiI ACGT 1 cut(s) 1123
TaqI TCGA 5 cut(s) 491, 1039, 1145, 1498, 1570
TatI WGTACW 5 cut(s) 17, 847, 1125, 1420, 1446
TfiI GAWTC 6 cut(s) 284, 359, 1142, 1291, 1348, 1601
Tru1I TTAA 5 cut(s) 768, 983, 1212, 1467, 1722
Tru9I TTAA 5 cut(s) 768, 983, 1212, 1467, 1722
TscAI CASTG 1 cut(s) 1022
TseFI GTSAC 2 cut(s) 1061, 1438
TseI GCWGC 4 cut(s) 511, 839, 1012, 1765
Tsp45I GTSAC 2 cut(s) 1061, 1438
TspDTI ATGAA 7 cut(s) 203, 297, 611, 1145, 1281, 1383, 1500
TspRI CASTG 1 cut(s) 1022
VneI GTGCAC 1 cut(s) 1741
VpaK11BI GGWCC 2 cut(s) 456, 1658
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 1456, 1463
XbaI TCTAGA 1 cut(s) 77
XmnI GAANNNNTTC 3 cut(s) 441, 688, 1107
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 2 cut(s) 19, 849
Zsp2I ATGCAT 1 cut(s) 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.