Rorug04G0011100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007789
Physical Location & Seq
Forward (+)
1873400 .. 1876361
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0011100.1

Sequence Viewer

Length: 732 bp
ATGGTCGGTTGGCAAAGGAATTGTATACAATCCCTAACTCGACATTTTGGGAAAGCAACACTACTCGAGGCCACTTCAACTCCTCCTCAGACCCAACAATCACTCTTGCGGCGCCCCTTTTATCACTACTCTCAACACTCGGGAATCTCCAGTTCAAGGAACTTACTTGCGGATTCCTCGTCTAATGTCCCGTCTCCCAATACCTTAAATCCACCGCCTCCGTCTTTGAAACAAGTTCAATATGTCTTAAAGGGCGTAACTCAGGACCCTAACAAGATCGACCTGGTTGGCAAACTGGTTCGTGGTATGCGTGTTGAAGATGTGTTGTCACAATTGTCAGTGACAGACAAGCAAGCTGCAAAAACCATGTATCAGGCTATTTACTCAGCTCGAGCAGATGCAACTTATAAACATGGGTTGGATCCAGATCAGCTACTTGTTGCTGGGGCATCTATTGGAAAGGGATTCGTGGGATTCAGCAAGAAGAGACTGGCCTACCATGGTAAAGGCAATGGAATTAAAGTGAGACCAAAACACCAACTGACGGTGGTTTTAAGGGAGATTGCCCCTGAAGAGGAGGCTGAGATAGCCAGACAAAGAGCCGACAATTTTCTTTATCTCAGTAAGCGCCTCAGGCTCACTAAGGAGGAAAATAAGAATATTCCTCTCCAGCTTATTCGGAAAAACAAAGGCAAATTCAGTAATGGTGAACCAAGTGGTATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.98

Weight (kDa)

10.06

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 84 - 185 7.2e-15 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 25
AciI CCGC 3 cut(s) 109, 170, 215
AclWI GGATC 2 cut(s) 416, 429
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 112
AfiI CCNNNNNNNGG 3 cut(s) 156, 544, 574
AgsI TTSAA 5 cut(s) 78, 156, 229, 239, 317
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 4 cut(s) 356, 389, 433, 673
AluI AGCT 4 cut(s) 356, 389, 433, 673
Alw26I GTCTC 3 cut(s) 198, 481, 520
AlwI GGATC 2 cut(s) 416, 429
Ama87I CYCGRG 3 cut(s) 65, 139, 390
AoxI GGCC 2 cut(s) 69, 492
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 695
AspLEI GCGC 2 cut(s) 114, 630
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 719
AvaI CYCGRG 3 cut(s) 65, 139, 390
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 632
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 198, 481, 520
BfoI RGCGCY 2 cut(s) 115, 631
BisI GCNGC 2 cut(s) 110, 357
BlsI GCNGC 2 cut(s) 111, 358
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 3 cut(s) 65, 139, 390
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 3 cut(s) 113, 267, 423
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 388, 458
BpmI CTGGAG 2 cut(s) 133, 653
BsaBI GATNNNNATC 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 544, 574
Bse1I ACTGG 3 cut(s) 150, 300, 495
Bse21I CCTNAGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 156, 544, 574
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 6 cut(s) 101, 275, 399, 573, 634, 646
BseNI ACTGG 3 cut(s) 150, 300, 495
BseRI GAGGAG 3 cut(s) 72, 75, 590
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 443
BshFI GGCC 2 cut(s) 71, 494
BshNI GGYRCC 1 cut(s) 111
BsiHKCI CYCGRG 3 cut(s) 65, 139, 390
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 156, 544, 574
BsmAI GTCTC 3 cut(s) 198, 481, 520
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 71, 494
Bso31I GGTCTC 1 cut(s) 520
BsoBI CYCGRG 3 cut(s) 65, 139, 390
Bsp143I GATC 3 cut(s) 276, 421, 427
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 3 cut(s) 109, 170, 215
BspANI GGCC 2 cut(s) 71, 494
BspCNI CTCAG 6 cut(s) 100, 274, 398, 574, 633, 645
BspHI TCATGA 1 cut(s) 728
BspLI GGNNCC 3 cut(s) 113, 267, 423
BspPI GGATC 2 cut(s) 416, 429
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 517
BsrI ACTGG 3 cut(s) 150, 300, 495
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 3 cut(s) 276, 421, 427
BssNAI GTATAC 1 cut(s) 26
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 499
Bst1107I GTATAC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 479, 567
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 7 cut(s) 87, 261, 385, 582, 620, 632, 642
BstDSI CCRYGG 1 cut(s) 499
BstH2I RGCGCY 2 cut(s) 115, 631
BstHHI GCGC 2 cut(s) 114, 630
BstKTI GATC 3 cut(s) 279, 424, 430
BstMAI GTCTC 3 cut(s) 198, 481, 520
BstMBI GATC 3 cut(s) 276, 421, 427
BstMWI GCNNNNNNNGC 2 cut(s) 587, 634
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BstZ17I GTATAC 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 632
BsuRI GGCC 2 cut(s) 71, 494
BtgI CCRYGG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 728
CfoI GCGC 2 cut(s) 114, 630
Cfr13I GGNCC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 282
CviAII CATG 4 cut(s) 367, 413, 500, 729
DdeI CTNAG 7 cut(s) 87, 261, 385, 582, 620, 632, 642
DinI GGCGCC 1 cut(s) 113
DpnI GATC 3 cut(s) 278, 423, 429
DpnII GATC 3 cut(s) 276, 421, 427
Eam1104I CTCTTC 2 cut(s) 479, 567
EarI CTCTTC 2 cut(s) 479, 567
Eco130I CCWWGG 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 632
Eco88I CYCGRG 3 cut(s) 65, 139, 390
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 4 cut(s) 370, 416, 503, 732
FaiI YATR 9 cut(s) 26, 243, 308, 368, 408, 414, 501, 722, 730
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 366, 412, 499, 728
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 110, 357
Fsp4HI GCNGC 2 cut(s) 110, 357
GlaI GCGC 2 cut(s) 113, 629
GluI GCNGC 2 cut(s) 110, 357
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 2 cut(s) 133, 653
HaeII RGCGCY 2 cut(s) 115, 631
HaeIII GGCC 2 cut(s) 71, 494
HhaI GCGC 2 cut(s) 114, 630
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 4 cut(s) 370, 416, 503, 732
Hin6I GCGC 2 cut(s) 112, 628
HinP1I GCGC 2 cut(s) 112, 628
HinfI GANTC 4 cut(s) 144, 173, 465, 474
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 2 cut(s) 26, 710
Hpy188I TCNGA 2 cut(s) 90, 681
Hpy188III TCNNGA 4 cut(s) 141, 263, 425, 729
Hpy8I GTNNAC 2 cut(s) 26, 710
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 2 cut(s) 359, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 634
HpyF3I CTNAG 7 cut(s) 87, 261, 385, 582, 620, 632, 642
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 4 cut(s) 370, 416, 503, 732
HspAI GCGC 2 cut(s) 112, 628
KasI GGCGCC 1 cut(s) 111
Kzo9I GATC 3 cut(s) 276, 421, 427
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 2 cut(s) 388, 458
MabI ACCWGGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 256, 327, 340
MalI GATC 3 cut(s) 278, 423, 429
MboI GATC 3 cut(s) 276, 421, 427
MboII GAAGA 3 cut(s) 329, 496, 584
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 421
MluCI AATT 5 cut(s) 19, 332, 516, 607, 695
Mly113I GGCGCC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 399
MseI TTAA 4 cut(s) 206, 248, 519, 554
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 587, 634
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 499
NdeII GATC 3 cut(s) 276, 421, 427
NlaIII CATG 4 cut(s) 370, 416, 503, 732
NlaIV GGNNCC 3 cut(s) 113, 267, 423
NmuCI GTSAC 2 cut(s) 327, 340
PaeR7I CTCGAG 2 cut(s) 65, 390
PagI TCATGA 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PfeI GAWTC 4 cut(s) 144, 173, 465, 474
PkrI GCNGC 2 cut(s) 111, 358
PluTI GGCGCC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 265
PsiI TTATAA 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 113, 267, 423
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PspXI VCTCGAGB 2 cut(s) 65, 390
PsuI RGATCY 1 cut(s) 421
SaqAI TTAA 4 cut(s) 206, 248, 519, 554
SatI GCNGC 2 cut(s) 110, 357
Sau3AI GATC 3 cut(s) 276, 421, 427
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 284
SetI ASST 6 cut(s) 206, 285, 358, 391, 435, 675
SexAI ACCWGGT 1 cut(s) 282
SfaNI GCATC 2 cut(s) 388, 458
SfoI GGCGCC 1 cut(s) 113
Sfr274I CTCGAG 2 cut(s) 65, 390
SinI GGWCC 1 cut(s) 265
SlaI CTCGAG 2 cut(s) 65, 390
SmlI CTYRAG 2 cut(s) 65, 390
SmoI CTYRAG 2 cut(s) 65, 390
Sse9I AATT 5 cut(s) 19, 332, 516, 607, 695
SsiI CCGC 3 cut(s) 109, 170, 215
SspDI GGCGCC 1 cut(s) 111
SspI AATATT 1 cut(s) 661
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 4 cut(s) 40, 66, 279, 391
TasI AATT 5 cut(s) 19, 332, 516, 607, 695
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 4 cut(s) 144, 173, 465, 474
Tru1I TTAA 4 cut(s) 206, 248, 519, 554
Tru9I TTAA 4 cut(s) 206, 248, 519, 554
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 2 cut(s) 327, 340
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 327, 340
TspDTI ATGAA 1 cut(s) 717
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 695
XhoI CTCGAG 2 cut(s) 65, 390
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.