Rmu_co8494159.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8494159.1
Physical Location & Seq
Reverse (-)
1 .. 2271
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8494159.1_g000001.1.cds

Sequence Viewer

Length: 1794 bp
atgaagagtccaggactcttttctgaaggtgttctccttttggggtcattttcttttgcgccttcagcgtctgaaaactcgaaaaccgtctgcttagagctgctctgtaggctgttgggagaggagtatcaggtgcttggatcatttagtggactaattccagaagtgcttgctggaattgggtatgctttatcttcttccaagagtgttcattttgttacaattttggattttgtgttgagtatttggggtaaggaaagtggccctcagggaaccgtctctcatgggctgatggttctgcatttgatggaatgggtattgtctggtttgagcaattttcgttctgtagagaaaattaatactctttgtagggaggctttagagaccttaaaaccaaactatgttccattcgcggttgtcatgactgcagctggagtactgagggctctgaatagatctgtagtgagaggtcttgcgctggatactatttccaaactgaggatgtctgcagaagatcggatagagtctgtagcaagagagttgatttcaagaacgagaggatttacgggtttaagtcatgatcacacagttagtcttttgctgcagtgtgttgcagtagcattggctcgaagtggtgttgtctcttctcgtgaccctttgtttgtctgccttgcttctgcactgttgactgaaatatttcccttgagacgtttgtacatgaaggtattggaatcaatgcatagcagttcagccgtactgaggatcaatgaggtcaaagaacaccttgaaagcatgacttttaaggaagcaggagccataactggtgttttctgcaatctgtatgtttcagtagatgaaaaaagccaatacatagtggagaatcttatatgggattactgtcaatgtatatacatggagcaccgacaggtcgctttgattcttcgtggtaaagaggatgaattacttggagatatggagaaaattgcggagtctgcttttcttatggttgtactctttgcgtcggcagtcacaaagtacaagctaaattcaaaatttaaccctgaaactcaattggatatatcagttcgaatacttatttcattttcttgtgttgagtatttccggcgcattcgtttaccagaatacatggatactattcgaggtaccgttgtgagtgttcaggaaagtgattctgcttgtgtgtctttcgtaaaatccattccagcttatgttgaattgacacagggtccagatttttctttcctacggaaaatggaatatgtgtggtccagtgatgaggttcaaactgctcgcatattgttctacttaagagtcattccaacttgcatcggacgactgcctagctctgtatttggaaaagtggttgctccaactatgttcttatatatgggacatcctaatggaaaagtagctagagcatcacattctatgttttcagcattcatatcttctgccaaggattctgatgaagatgaaagggtgtcattaaaggagcagcttgttttctactatatacagagatcactaatggaatatcctgagattactccttttgagggaatggcttctggagttgcagctgttgttcgacatcttccagctggaagcccagctatattttattgtatccattgtctggttgaaaaagctaataggtgcaataaagactttgctcagcaggctgatatgtggaagaactggcaaggagagtcggagccttgcaagaaaatcctagatttgcttttacgattaatttctctggttgacatacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

598

Amino Acids

66.76

Weight (kDa)

6.35

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 1163
AccB7I CCANNNNNTGG 1 cut(s) 1657
AccII CGCG 1 cut(s) 413
AciI CCGC 2 cut(s) 413, 986
AclWI GGATC 2 cut(s) 148, 770
AcsI RAATTY 2 cut(s) 1045, 1052
AcuI CTGAAG 2 cut(s) 45, 48
AfaI GTAC 6 cut(s) 438, 716, 756, 1011, 1037, 1165
AfiI CCNNNNNNNGG 4 cut(s) 498, 759, 1577, 1657
AflII CTTAAG 1 cut(s) 1327
AgsI TTSAA 6 cut(s) 549, 788, 1050, 1235, 1304, 1664
AhdI GACNNNNNGTC 1 cut(s) 1245
AjnI CCWGG 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 4 cut(s) 283, 377, 646, 700
AlwI GGATC 2 cut(s) 148, 770
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 5 cut(s) 100, 428, 601, 1516, 1598
ApoI RAATTY 2 cut(s) 1045, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AseI ATTAAT 2 cut(s) 357, 1772
Asp700I GAANNNNTTC 3 cut(s) 30, 696, 1585
Asp718I GGTACC 1 cut(s) 1163
AspLEI GCGC 3 cut(s) 61, 478, 1128
AspS9I GGNCC 3 cut(s) 263, 1247, 1287
AsuII TTCGAA 1 cut(s) 1087
AvaII GGWCC 2 cut(s) 1247, 1287
AxyI CCTNAGG 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 1155, 1188
BanI GGYRCC 1 cut(s) 1163
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 5 cut(s) 87, 440, 588, 1528, 1610
BccI CCATC 2 cut(s) 286, 301
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 3 cut(s) 475, 1144, 1658
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 4 cut(s) 283, 377, 646, 700
BfaI CTAG 3 cut(s) 1362, 1434, 1754
BfmI CTRYAG 7 cut(s) 106, 345, 426, 459, 507, 528, 602
BfrI CTTAAG 1 cut(s) 1327
BfuI GTATCC 3 cut(s) 475, 1144, 1658
BglII AGATCT 1 cut(s) 455
BisI GCNGC 5 cut(s) 101, 429, 602, 1517, 1599
BlpI GCTNAGC 1 cut(s) 1695
BlsI GCNGC 5 cut(s) 102, 430, 603, 1518, 1600
BmcAI AGTACT 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 1247, 1287
BmeRI GACNNNNNGTC 1 cut(s) 1245
BmgT120I GGNCC 3 cut(s) 263, 1247, 1287
BmiI GGNNCC 5 cut(s) 274, 814, 1165, 1248, 1737
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 1356, 1448
BpmI CTGGAG 2 cut(s) 453, 1611
Bpu1102I GCTNAGC 1 cut(s) 1695
Bpu14I TTCGAA 1 cut(s) 1087
BpuEI CTTGAG 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 1476
Bsc4I CCNNNNNNNGG 4 cut(s) 498, 759, 1577, 1657
Bse1I ACTGG 3 cut(s) 826, 1290, 1724
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 1476
BseGI GGATG 3 cut(s) 507, 961, 1414
BseLI CCNNNNNNNGG 4 cut(s) 498, 759, 1577, 1657
BseMII CTCAG 6 cut(s) 281, 431, 488, 749, 1551, 1709
BseNI ACTGG 3 cut(s) 826, 1290, 1724
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 5 cut(s) 87, 440, 588, 1528, 1610
BseYI CCCAGC 1 cut(s) 1630
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 1163
BsiHKAI GWGCWC 1 cut(s) 921
BsiSI CCGG 1 cut(s) 1123
BslFI GGGAC 1 cut(s) 1425
BslI CCNNNNNNNGG 4 cut(s) 498, 759, 1577, 1657
BsmAI GTCTC 4 cut(s) 283, 377, 646, 700
BsmBI CGTCTC 2 cut(s) 283, 700
BsmFI GGGAC 1 cut(s) 1425
BsmI GAATGC 2 cut(s) 1128, 1460
BsnI GGCC 1 cut(s) 264
Bso31I GGTCTC 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 448, 921
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
Bsp1720I GCTNAGC 1 cut(s) 1695
BspACI CCGC 2 cut(s) 413, 986
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 6 cut(s) 280, 432, 489, 750, 1552, 1708
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 2 cut(s) 420, 577
BspLI GGNNCC 5 cut(s) 274, 814, 1165, 1248, 1737
BspMAI CTGCAG 3 cut(s) 430, 511, 606
BspPI GGATC 2 cut(s) 148, 770
BspT104I TTCGAA 1 cut(s) 1087
BspT107I GGYRCC 1 cut(s) 1163
BspTI CTTAAG 1 cut(s) 1327
BspTNI GGTCTC 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 3 cut(s) 826, 1290, 1724
BssECI CCNNGG 1 cut(s) 1476
BssMI GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 1476
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 6 cut(s) 88, 277, 589, 684, 899, 1168
Bst6I CTCTTC 1 cut(s) 649
BstAFI CTTAAG 1 cut(s) 1327
BstAUI TGTACA 1 cut(s) 714
BstBI TTCGAA 1 cut(s) 1087
BstC8I GCNNGC 3 cut(s) 171, 1312, 1701
BstDEI CTNAG 7 cut(s) 94, 267, 440, 497, 758, 1560, 1695
BstF5I GGATG 3 cut(s) 507, 961, 1414
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 3 cut(s) 61, 478, 1128
BstKTI GATC 6 cut(s) 143, 458, 517, 583, 765, 1544
BstMAI GTCTC 4 cut(s) 283, 377, 646, 700
BstMBI GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
BstMWI GCNNNNNNNGC 4 cut(s) 65, 109, 992, 1700
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 7 cut(s) 106, 345, 426, 459, 507, 528, 602
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 5 cut(s) 87, 440, 588, 1528, 1610
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 3 cut(s) 475, 1144, 1658
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 3 cut(s) 507, 961, 1414
BtsI GCAGTG 1 cut(s) 611
BtsIMutI CAGTG 3 cut(s) 611, 680, 1297
Cac8I GCNNGC 3 cut(s) 171, 1312, 1701
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 2 cut(s) 420, 577
CfoI GCGC 3 cut(s) 61, 478, 1128
Cfr13I GGNCC 3 cut(s) 263, 1247, 1287
CseI GACGC 2 cut(s) 57, 1008
Csp6I GTAC 6 cut(s) 437, 715, 755, 1010, 1036, 1164
CviAII CATG 7 cut(s) 284, 421, 578, 718, 793, 913, 1147
CviQI GTAC 6 cut(s) 437, 715, 755, 1010, 1036, 1164
DdeI CTNAG 7 cut(s) 94, 267, 440, 497, 758, 1560, 1695
DpnI GATC 6 cut(s) 142, 457, 516, 582, 764, 1543
DpnII GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
DriI GACNNNNNGTC 1 cut(s) 1245
Eam1104I CTCTTC 1 cut(s) 649
Eam1105I GACNNNNNGTC 1 cut(s) 1245
EarI CTCTTC 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 1476
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 1247, 1287
Eco57I CTGAAG 2 cut(s) 45, 48
Eco81I CCTNAGG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 1476
EcoT22I ATGCAT 1 cut(s) 741
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 1476
Esp3I CGTCTC 2 cut(s) 283, 700
FaeI CATG 7 cut(s) 287, 424, 581, 721, 796, 916, 1150
FalI AAGNNNNNCTT 4 cut(s) 768, 800, 781, 813
FaqI GGGAC 1 cut(s) 1425
FatI CATG 7 cut(s) 283, 420, 577, 717, 792, 912, 1146
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 5 cut(s) 101, 429, 602, 1517, 1599
FokI GGATG 3 cut(s) 514, 968, 1401
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 5 cut(s) 101, 429, 602, 1517, 1599
FspBI CTAG 3 cut(s) 1362, 1434, 1754
GlaI GCGC 3 cut(s) 60, 477, 1127
GluI GCNGC 5 cut(s) 101, 429, 602, 1517, 1599
GsaI CCCAGC 1 cut(s) 1634
GsuI CTGGAG 2 cut(s) 453, 1611
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 1123
HgaI GACGC 2 cut(s) 57, 1008
HhaI GCGC 3 cut(s) 61, 478, 1128
Hin1II CATG 7 cut(s) 287, 424, 581, 721, 796, 916, 1150
Hin6I GCGC 3 cut(s) 59, 476, 1126
HinP1I GCGC 3 cut(s) 59, 476, 1126
HincII GTYRAC 2 cut(s) 687, 1786
HindII GTYRAC 2 cut(s) 687, 1786
HpaII CCGG 1 cut(s) 1123
Hpy166II GTNNAC 4 cut(s) 152, 687, 1136, 1786
Hpy188I TCNGA 7 cut(s) 25, 73, 450, 519, 1352, 1486, 1735
Hpy188III TCNNGA 9 cut(s) 161, 421, 549, 578, 650, 1181, 1250, 1559, 1590
Hpy8I GTNNAC 4 cut(s) 152, 687, 1136, 1786
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 3 cut(s) 20, 72, 715
HpyCH4III ACNGT 6 cut(s) 88, 277, 589, 684, 899, 1168
HpyCH4IV ACGT 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 109, 992, 1700
HpyF3I CTNAG 7 cut(s) 94, 267, 440, 497, 758, 1560, 1695
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 7 cut(s) 287, 424, 581, 721, 796, 916, 1150
HspAI GCGC 3 cut(s) 59, 476, 1126
KpnI GGTACC 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
LmnI GCTCC 5 cut(s) 812, 916, 1393, 1513, 1735
Lsp1109I GCAGC 5 cut(s) 87, 440, 588, 1528, 1610
LweI GCATC 2 cut(s) 1356, 1448
MaeI CTAG 3 cut(s) 1362, 1434, 1754
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 3 cut(s) 217, 650, 1027
MalI GATC 6 cut(s) 142, 457, 516, 582, 764, 1543
MboI GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
MfeI CAATTG 1 cut(s) 1070
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 448, 921
MlyI GAGTC 6 cut(s) 9, 16, 533, 998, 1341, 1739
MmeI TCCRAC 3 cut(s) 1364, 1415, 1713
Mph1103I ATGCAT 1 cut(s) 741
MroXI GAANNNNTTC 3 cut(s) 30, 696, 1585
MseI TTAA 8 cut(s) 357, 389, 572, 801, 1056, 1328, 1508, 1772
MslI CAYNNNNRTG 1 cut(s) 1419
MspA1I CMGCKG 3 cut(s) 431, 1601, 1622
MspCI CTTAAG 1 cut(s) 1327
MspI CCGG 1 cut(s) 1123
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 1070
Mva1269I GAATGC 2 cut(s) 1128, 1460
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 65, 109, 992, 1700
NdeII GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
NlaIII CATG 7 cut(s) 287, 424, 581, 721, 796, 916, 1150
NlaIV GGNNCC 5 cut(s) 274, 814, 1165, 1248, 1737
NmuCI GTSAC 2 cut(s) 650, 1027
NsiI ATGCAT 1 cut(s) 741
NspV TTCGAA 1 cut(s) 1087
PagI TCATGA 2 cut(s) 420, 577
PctI GAATGC 2 cut(s) 1128, 1460
PdmI GAANNNNTTC 3 cut(s) 30, 696, 1585
PfeI GAWTC 5 cut(s) 731, 880, 937, 1190, 1481
PflMI CCANNNNNTGG 1 cut(s) 1657
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 5 cut(s) 102, 430, 603, 1518, 1600
PleI GAGTC 6 cut(s) 9, 15, 532, 997, 1340, 1738
PpsI GAGTC 6 cut(s) 9, 15, 532, 997, 1340, 1738
PshBI ATTAAT 2 cut(s) 357, 1772
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 1630
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 5 cut(s) 274, 814, 1165, 1248, 1737
PspPI GGNCC 3 cut(s) 263, 1247, 1287
PstI CTGCAG 3 cut(s) 430, 511, 606
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 455
PvuII CAGCTG 3 cut(s) 431, 1601, 1622
RsaI GTAC 6 cut(s) 438, 716, 756, 1011, 1037, 1165
RsaNI GTAC 6 cut(s) 437, 715, 755, 1010, 1036, 1164
RseI CAYNNNNRTG 1 cut(s) 1419
SaqAI TTAA 8 cut(s) 357, 389, 572, 801, 1056, 1328, 1508, 1772
SatI GCNGC 5 cut(s) 101, 429, 602, 1517, 1599
Sau3AI GATC 6 cut(s) 140, 455, 514, 580, 762, 1541
Sau96I GGNCC 3 cut(s) 263, 1247, 1287
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 6 cut(s) 9, 16, 533, 998, 1341, 1739
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 448, 921
SfaNI GCATC 2 cut(s) 1356, 1448
SfcI CTRYAG 7 cut(s) 106, 345, 426, 459, 507, 528, 602
SfuI TTCGAA 1 cut(s) 1087
SinI GGWCC 2 cut(s) 1247, 1287
SmiMI CAYNNNNRTG 1 cut(s) 1419
SmlI CTYRAG 2 cut(s) 703, 1327
SmoI CTYRAG 2 cut(s) 703, 1327
SsiI CCGC 2 cut(s) 413, 986
SspI AATATT 1 cut(s) 696
SspMI CTAG 3 cut(s) 1362, 1434, 1754
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 1476
TaaI ACNGT 6 cut(s) 88, 277, 589, 684, 899, 1168
TaiI ACGT 1 cut(s) 712
TaqI TCGA 5 cut(s) 80, 628, 1087, 1159, 1609
TatI WGTACW 4 cut(s) 436, 714, 1009, 1035
TfiI GAWTC 5 cut(s) 731, 880, 937, 1190, 1481
Tru1I TTAA 8 cut(s) 357, 389, 572, 801, 1056, 1328, 1508, 1772
Tru9I TTAA 8 cut(s) 357, 389, 572, 801, 1056, 1328, 1508, 1772
TscAI CASTG 3 cut(s) 611, 687, 1297
TseFI GTSAC 2 cut(s) 650, 1027
TseI GCWGC 5 cut(s) 100, 428, 601, 1516, 1598
Tsp45I GTSAC 2 cut(s) 650, 1027
TspDTI ATGAA 9 cut(s) 17, 200, 734, 870, 972, 1089, 1453, 1503, 1509
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 3 cut(s) 611, 687, 1297
Van91I CCANNNNNTGG 1 cut(s) 1657
Vha464I CTTAAG 1 cut(s) 1327
VpaK11BI GGWCC 2 cut(s) 1247, 1287
VspI ATTAAT 2 cut(s) 357, 1772
XapI RAATTY 2 cut(s) 1045, 1052
XmnI GAANNNNTTC 3 cut(s) 30, 696, 1585
XspI CTAG 3 cut(s) 1362, 1434, 1754
ZrmI AGTACT 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.