Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002943

Physical Location & Seq

Genomic Coordinates Reverse (-)

16037033 .. 16039381

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G182400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTGAAGTTCCTGTCAAGGGTGAGGATTGAGTTCAATGCCTTGGACCCACGTACGGCCTCGTGTCTGGAGTTCTTGGCACAGTGCAATGCCCGGAAGGCCAAGGAGTCCAACCCCTCCTGCGCTGTCCAAGTCAAGCGCCGAACCGATGATGAGCCGCCTAAGATCACCGTCACCTTTGTCAATGGAGTCGAGGAGGTGTTCGACGCCACCGCCACTCCCGCCCAGGACATCAGGAACATGATTCTCGAAAAGGGTCAGAGCCTCGAGACTGAGCAGATGTTCCGCGACGCTGGTGAGCCTTGGCCCGTTGTTATCCCCGCCGAGGAGCTCCACCAACCGGCCCCTGGTACCAAGATTACTGGGGAGCGCTTGTATAGTCAAGTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP_L53

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

5.25

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39600
fragaria_vesca	FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_2g38800
malus_domestica	MD02G1241500.v1.1 MD07G1075400.v1.1
prunus_persica	Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G368800_v2.0.a1
pyrus_communis	pycom02g20690
rosa_chinensis	RchiOBHm_Chr6g0302491
rosa_laevigata	RLG00000007837 RLG00000011168
rosa_multiflora	Rmu_sc0018485.1_g000003 Rmu_sc0042878.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165720
rosa_rugosa	Rorug06G0314500
rosa_samantha	Rh6AG427700 Rh6BG475000 Rh6CG439800 Rh6DG426800
rosa_wichuraiana	Rw6G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	158, 213, 222, 286, 321
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	55, 352
AfeI	AGCGCT	1 cut(s)	371
AfiI	CCNNNNNNNGG	5 cut(s)	19, 55, 325, 340, 347
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	225, 346
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	266
Aor51HI	AGCGCT	1 cut(s)	371
AoxI	GGCC	4 cut(s)	57, 99, 305, 342
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	3 cut(s)	125, 141, 372
AspS9I	GGNCC	3 cut(s)	46, 306, 343
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	4 cut(s)	34, 160, 166, 308
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	227, 348
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	391
BfoI	RGCGCY	2 cut(s)	142, 373
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	3 cut(s)	94, 227, 348
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	46, 306, 343
BmiI	GGNNCC	3 cut(s)	48, 345, 352
BmrFI	CCNGG	3 cut(s)	94, 227, 348
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	6 cut(s)	42, 102, 225, 302, 324, 346
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 55, 325, 340, 347
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	227, 348
BseDI	CCNNGG	6 cut(s)	42, 102, 225, 302, 324, 346
BseLI	CCNNNNNNNGG	5 cut(s)	19, 55, 325, 340, 347
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	209, 341
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	59, 101, 307, 344
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	94, 341
BsiWI	CGTACG	1 cut(s)	53
BslI	CCNNNNNNNGG	5 cut(s)	19, 55, 325, 340, 347
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	59, 101, 307, 344
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	5 cut(s)	158, 213, 222, 286, 321
BspANI	GGCC	4 cut(s)	59, 101, 307, 344
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	48, 345, 352
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	6 cut(s)	42, 102, 225, 302, 324, 346
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	3 cut(s)	42, 102, 302
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	227, 348
Bst4CI	ACNGT	2 cut(s)	84, 172
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	162, 273
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	2 cut(s)	142, 373
BstHHI	GCGC	3 cut(s)	125, 141, 372
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 221
BstNI	CCWGG	2 cut(s)	227, 348
BstSCI	CCNGG	3 cut(s)	92, 225, 346
BstUI	CGCG	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	59, 101, 307, 344
BtsIMutI	CAGTG	1 cut(s)	89
CfoI	GCGC	3 cut(s)	125, 141, 372
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	46, 306, 343
CseI	GACGC	2 cut(s)	215, 299
Csp6I	GTAC	2 cut(s)	54, 351
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	8 cut(s)	59, 101, 157, 264, 301, 307, 331, 344
CviKI_1	RGCY	8 cut(s)	59, 101, 157, 264, 301, 307, 331, 344
CviQI	GTAC	2 cut(s)	54, 351
DdeI	CTNAG	2 cut(s)	162, 273
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	3 cut(s)	42, 102, 302
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	225, 346
EcoT14I	CCWWGG	3 cut(s)	42, 102, 302
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	3 cut(s)	42, 102, 302
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	242, 378
FatI	CATG	1 cut(s)	240
FauI	CCCGC	2 cut(s)	229, 328
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	391
GlaI	GCGC	3 cut(s)	124, 140, 371
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	2 cut(s)	142, 373
HaeIII	GGCC	4 cut(s)	59, 101, 307, 344
HapII	CCGG	2 cut(s)	94, 341
HgaI	GACGC	2 cut(s)	215, 299
HhaI	GCGC	3 cut(s)	125, 141, 372
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	3 cut(s)	123, 139, 370
HinP1I	GCGC	3 cut(s)	123, 139, 370
HinfI	GANTC	3 cut(s)	107, 189, 244
HpaII	CCGG	2 cut(s)	94, 341
HphI	GGTGA	4 cut(s)	34, 160, 166, 308
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	68, 235, 248, 268
Hpy99I	CGWCG	2 cut(s)	209, 293
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	84, 172
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 221
HpyF3I	CTNAG	2 cut(s)	162, 273
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	3 cut(s)	123, 139, 370
KpnI	GGTACC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	328, 336, 367
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	116, 198
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	18, 70, 127, 187, 190, 275, 319
MspI	CCGG	2 cut(s)	94, 341
MspR9I	CCNGG	3 cut(s)	94, 227, 348
MvaI	CCWGG	2 cut(s)	227, 348
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	98, 221
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	3 cut(s)	48, 345, 352
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	244
Pfl23II	CGTACG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	2 cut(s)	115, 197
PpsI	GAGTC	2 cut(s)	115, 197
Ppu21I	YACGTR	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	225, 346
PspGI	CCWGG	2 cut(s)	225, 346
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	48, 345, 352
PspPI	GGNCC	3 cut(s)	46, 306, 343
RsaI	GTAC	2 cut(s)	55, 352
RsaNI	GTAC	2 cut(s)	54, 351
SacI	GAGCTC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	46, 306, 343
SchI	GAGTC	2 cut(s)	116, 198
ScrFI	CCNGG	3 cut(s)	94, 227, 348
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	55, 179, 201, 333
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SsiI	CCGC	5 cut(s)	158, 213, 222, 286, 321
SspMI	CTAG	1 cut(s)	391
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	92, 225, 346
StyI	CCWWGG	3 cut(s)	42, 102, 302
TaaI	ACNGT	2 cut(s)	84, 172
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	4 cut(s)	192, 204, 249, 267
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.