Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002943

Physical Location & Seq

Genomic Coordinates Reverse (-)

33714165 .. 33715466

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G368800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGAAGTTCCTGTCGAGAGTGAGGATCGAGTTTAATGCCTTGGACCCGCGTACGGCGTCGTGTCTGGAGTTCTTGGCACAGTGCAACGCCCGCAAGGCCAAGGAGTCCAACCCCTCCTGCGCCGTCCAAGTCAAGCGCCGAACCGACGACGAGCCGCCCAAGATCACCGTCACCTTCGTCAACGGCGTCGAGGAGGTCTTCGACGCCACCGCCACTCCCGCCCAGGACATCAGGAACATGATCCTTGAAAAGGGTCAGAGCCTCGAGACCGAGCAGATGTTCCGCGACGCCGGCGAGCCCTGGCCCGTCATTATCCCCGCAGAGGAGCTCCACCAACCGGCCCCTGGTACCAAGCCGAGGAAAGCAGACGAGAAAAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP_L53

Protein Analysis

129

Amino Acids

14.41

Weight (kDa)

5.91

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39600
fragaria_vesca	FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_2g38800
malus_domestica	MD02G1241500.v1.1 MD07G1075400.v1.1
prunus_persica	Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G368800_v2.0.a1
pyrus_communis	pycom02g20690
rosa_chinensis	RchiOBHm_Chr6g0302491
rosa_laevigata	RLG00000007837 RLG00000011168
rosa_multiflora	Rmu_sc0018485.1_g000003 Rmu_sc0042878.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165720
rosa_rugosa	Rorug06G0314500
rosa_samantha	Rh6AG427700 Rh6BG475000 Rh6CG439800 Rh6DG426800
rosa_wichuraiana	Rw6G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	2 cut(s)	52, 288
AciI	CCGC	7 cut(s)	50, 94, 158, 213, 222, 286, 321
AclWI	GGATC	2 cut(s)	35, 238
AcyI	GRCGYC	4 cut(s)	59, 189, 207, 291
AfaI	GTAC	2 cut(s)	55, 352
AfiI	CCNNNNNNNGG	6 cut(s)	55, 253, 325, 340, 347, 360
AgsI	TTSAA	2 cut(s)	7, 251
AjnI	CCWGG	3 cut(s)	225, 302, 346
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	35, 238
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	99, 305, 342
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	125, 141
AspS9I	GGNCC	3 cut(s)	46, 306, 343
AsuHPI	GGTGA	2 cut(s)	160, 166
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	303, 333
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	333
BceAI	ACGGC	3 cut(s)	72, 110, 202
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	3 cut(s)	227, 304, 348
BcoDI	GTCTC	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	3 cut(s)	227, 304, 348
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	46, 306, 343
BmiI	GGNNCC	3 cut(s)	48, 345, 352
BmrFI	CCNGG	3 cut(s)	227, 304, 348
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	89
BsaHI	GRCGYC	4 cut(s)	59, 189, 207, 291
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	6 cut(s)	42, 102, 225, 302, 346, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 253, 325, 340, 347, 360
Bse118I	RCCGGY	2 cut(s)	293, 340
BseBI	CCWGG	3 cut(s)	227, 304, 348
BseDI	CCNNGG	6 cut(s)	42, 102, 225, 302, 346, 359
BseLI	CCNNNNNNNGG	6 cut(s)	55, 253, 325, 340, 347, 360
BseRI	GAGGAG	2 cut(s)	209, 341
Bsh1236I	CGCG	2 cut(s)	52, 288
BshFI	GGCC	3 cut(s)	101, 307, 344
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	294, 341
BsiWI	CGTACG	1 cut(s)	53
BslI	CCNNNNNNNGG	6 cut(s)	55, 253, 325, 340, 347, 360
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	101, 307, 344
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	303, 333
Bsp143I	GATC	3 cut(s)	27, 165, 243
BspACI	CCGC	7 cut(s)	50, 94, 158, 213, 222, 286, 321
BspANI	GGCC	3 cut(s)	101, 307, 344
BspFNI	CGCG	2 cut(s)	52, 288
BspLI	GGNNCC	3 cut(s)	48, 345, 352
BspPI	GGATC	2 cut(s)	35, 238
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	263
BsrFI	RCCGGY	2 cut(s)	293, 340
BssAI	RCCGGY	2 cut(s)	293, 340
BssECI	CCNNGG	6 cut(s)	42, 102, 225, 302, 346, 359
BssMI	GATC	3 cut(s)	27, 165, 243
BssNI	GRCGYC	4 cut(s)	59, 189, 207, 291
BssT1I	CCWWGG	2 cut(s)	42, 102
Bst2UI	CCWGG	3 cut(s)	227, 304, 348
Bst4CI	ACNGT	2 cut(s)	84, 172
BstACI	GRCGYC	4 cut(s)	59, 189, 207, 291
BstC8I	GCNNGC	3 cut(s)	94, 295, 299
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstFNI	CGCG	2 cut(s)	52, 288
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	125, 141
BstKTI	GATC	3 cut(s)	30, 168, 246
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	27, 165, 243
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 98, 221, 294
BstNI	CCWGG	3 cut(s)	227, 304, 348
BstSCI	CCNGG	3 cut(s)	225, 302, 346
BstUI	CGCG	2 cut(s)	52, 288
BstV2I	GAAGAC	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	101, 307, 344
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	94, 295, 299
CfoI	GCGC	2 cut(s)	125, 141
Cfr10I	RCCGGY	2 cut(s)	293, 340
Cfr13I	GGNCC	3 cut(s)	46, 306, 343
CseI	GACGC	4 cut(s)	48, 178, 215, 299
Csp6I	GTAC	2 cut(s)	54, 351
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	8 cut(s)	101, 157, 264, 301, 307, 331, 344, 358
CviKI_1	RGCY	8 cut(s)	101, 157, 264, 301, 307, 331, 344, 358
CviQI	GTAC	2 cut(s)	54, 351
DpnI	GATC	3 cut(s)	29, 167, 245
DpnII	GATC	3 cut(s)	27, 165, 243
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	42, 102
Eco24I	GRGCYC	2 cut(s)	303, 333
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	225, 302, 346
EcoT14I	CCWWGG	2 cut(s)	42, 102
EcoT38I	GRGCYC	2 cut(s)	303, 333
ErhI	CCWWGG	2 cut(s)	42, 102
FaeI	CATG	1 cut(s)	244
FaiI	YATR	1 cut(s)	242
FatI	CATG	1 cut(s)	240
FauI	CCCGC	4 cut(s)	57, 101, 229, 328
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	2 cut(s)	303, 333
Fsp4HI	GCNGC	1 cut(s)	158
GlaI	GCGC	2 cut(s)	124, 140
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	101, 307, 344
HapII	CCGG	2 cut(s)	294, 341
HgaI	GACGC	4 cut(s)	48, 178, 215, 299
HhaI	GCGC	2 cut(s)	125, 141
Hin1I	GRCGYC	4 cut(s)	59, 189, 207, 291
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	123, 139
HinP1I	GCGC	2 cut(s)	123, 139
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	294, 341
HphI	GGTGA	2 cut(s)	160, 166
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	18, 68, 235, 268
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	6 cut(s)	64, 152, 155, 194, 209, 293
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	84, 172
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 98, 221, 294
Hsp92I	GRCGYC	4 cut(s)	59, 189, 207, 291
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	2 cut(s)	123, 139
KpnI	GGTACC	1 cut(s)	354
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	27, 165, 243
LmnI	GCTCC	2 cut(s)	328, 336
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	29, 167, 245
MboI	GATC	3 cut(s)	27, 165, 243
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	303, 333
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	18, 127, 187, 190, 275, 319, 354
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	1 cut(s)	36
MspI	CCGG	2 cut(s)	294, 341
MspR9I	CCNGG	3 cut(s)	227, 304, 348
MvaI	CCWGG	3 cut(s)	227, 304, 348
MvnI	CGCG	2 cut(s)	52, 288
MwoI	GCNNNNNNNGC	4 cut(s)	93, 98, 221, 294
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	27, 165, 243
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	3 cut(s)	48, 345, 352
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	295
Pfl23II	CGTACG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	3 cut(s)	225, 302, 346
PspGI	CCWGG	3 cut(s)	225, 302, 346
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	48, 345, 352
PspPI	GGNCC	3 cut(s)	46, 306, 343
RsaI	GTAC	2 cut(s)	55, 352
RsaNI	GTAC	2 cut(s)	54, 351
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	27, 165, 243
Sau96I	GGNCC	3 cut(s)	46, 306, 343
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	227, 304, 348
SduI	GDGCHC	2 cut(s)	303, 333
SetI	ASST	3 cut(s)	179, 201, 333
Sfr274I	CTCGAG	1 cut(s)	266
SgrAI	CRCCGGYG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SsiI	CCGC	7 cut(s)	50, 94, 158, 213, 222, 286, 321
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	225, 302, 346
StyI	CCWWGG	2 cut(s)	42, 102
TaaI	ACNGT	2 cut(s)	84, 172
TaqI	TCGA	5 cut(s)	17, 30, 192, 204, 267
TaqII	GACCGA	1 cut(s)	287
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.