Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002943

Physical Location & Seq

Genomic Coordinates Reverse (-)

21757679 .. 21760727

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTTTGGAGCAATCACGCTAACCAAGGACAACTGAGGCTTTGCAAGCAGCGTGGCGCCGCTATAAACAATTCCAAAAGACTCCCAGGAAGGGCAGTGTTTCTGCCACCCACCACACTACAGTCTCATAAACCATCAGAGCACTGCACCGATGACGAGCCACCTAAGATCACCGTCACCTTCTTCAACGGAGTCGATGAGGTTTTGGACGCCACTACCACGCTCCCCCAGAGCATAAGGATCATGATTCTCGAAAAAGGTCAGATGCTCCAGACAGAGCAGATGTTCGGAGACGCCAACAAAGCTCAGCTGGTTCTTATTCCAGCCGAGGAGCTCAACCAACCCTTACCTGGTACTATGCCAAGGAAAGCAGAATACATTGTTTGGCATGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP_L53

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

6.4

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39600
fragaria_vesca	FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_1g25620 FvH4_2g38800
malus_domestica	MD02G1241500.v1.1 MD07G1075400.v1.1
prunus_persica	Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G182400_v2.0.a1 Prupe.1G368800_v2.0.a1
pyrus_communis	pycom02g20690
rosa_chinensis	RchiOBHm_Chr6g0302491
rosa_laevigata	RLG00000007837 RLG00000011168
rosa_multiflora	Rmu_sc0018485.1_g000003 Rmu_sc0042878.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165720
rosa_rugosa	Rorug06G0314500
rosa_samantha	Rh6AG427700 Rh6BG475000 Rh6CG439800 Rh6DG426800
rosa_wichuraiana	Rw6G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	248
AcyI	GRCGYC	3 cut(s)	57, 210, 294
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	91, 350
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	85, 349
AluBI	AGCT	3 cut(s)	305, 310, 334
AluI	AGCT	3 cut(s)	305, 310, 334
Alw21I	GWGCWC	2 cut(s)	144, 336
Alw26I	GTCTC	2 cut(s)	129, 285
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	163, 169
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	144, 336
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	87, 351
BcoDI	GTCTC	2 cut(s)	129, 285
BfmI	CTRYAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	2 cut(s)	50, 60
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	51, 61
Bme1390I	CCNGG	2 cut(s)	87, 351
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	87, 351
BmsI	GCATC	2 cut(s)	255, 382
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaHI	GRCGYC	3 cut(s)	57, 210, 294
BsaJI	CCNNGG	4 cut(s)	25, 85, 327, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 350
BseBI	CCWGG	2 cut(s)	87, 351
BseDI	CCNNGG	4 cut(s)	25, 85, 327, 362
BseLI	CCNNNNNNNGG	2 cut(s)	91, 350
BseMII	CTCAG	2 cut(s)	26, 320
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	144, 336
BslI	CCNNNNNNNGG	2 cut(s)	91, 350
BsmAI	GTCTC	2 cut(s)	129, 285
BsmBI	CGTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	144, 336
Bsp143I	GATC	2 cut(s)	168, 240
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	27, 319
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	25, 85, 327, 362
BssMI	GATC	2 cut(s)	168, 240
BssNI	GRCGYC	3 cut(s)	57, 210, 294
BssT1I	CCWWGG	2 cut(s)	25, 362
Bst2UI	CCWGG	2 cut(s)	87, 351
Bst4CI	ACNGT	2 cut(s)	123, 175
BstACI	GRCGYC	3 cut(s)	57, 210, 294
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	35, 165, 306
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	171, 243
BstMAI	GTCTC	2 cut(s)	129, 285
BstMBI	GATC	2 cut(s)	168, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 302
BstNI	CCWGG	2 cut(s)	87, 351
BstSCI	CCNGG	2 cut(s)	85, 349
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	61
BtsI	GCAGTG	2 cut(s)	102, 142
BtsIMutI	CAGTG	2 cut(s)	102, 142
Cac8I	GCNNGC	1 cut(s)	47
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	2 cut(s)	218, 302
CsiI	ACCWGGT	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	244, 389, 396
CviJI	RGCY	6 cut(s)	40, 160, 305, 310, 326, 334
CviKI_1	RGCY	6 cut(s)	40, 160, 305, 310, 326, 334
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	35, 165, 306
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	2 cut(s)	170, 242
DpnII	GATC	2 cut(s)	168, 240
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	25, 362
Eco24I	GRGCYC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	85, 349
EcoT14I	CCWWGG	2 cut(s)	25, 362
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	25, 362
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	3 cut(s)	247, 392, 399
FaiI	YATR	7 cut(s)	65, 129, 236, 245, 359, 390, 397
FatI	CATG	3 cut(s)	243, 388, 395
Fnu4HI	GCNGC	2 cut(s)	50, 60
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	50, 60
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	50, 60
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	60
HgaI	GACGC	2 cut(s)	218, 302
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	3 cut(s)	57, 210, 294
Hin1II	CATG	3 cut(s)	247, 392, 399
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	81, 192, 247
HphI	GGTGA	2 cut(s)	163, 169
Hpy188I	TCNGA	3 cut(s)	139, 264, 290
Hpy188III	TCNNGA	3 cut(s)	244, 251, 271
HpyAV	CCTTC	2 cut(s)	84, 190
HpyCH4III	ACNGT	2 cut(s)	123, 175
HpyCH4V	TGCA	3 cut(s)	45, 147, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 302
HpyF3I	CTNAG	3 cut(s)	35, 165, 306
Hsp92I	GRCGYC	3 cut(s)	57, 210, 294
Hsp92II	CATG	3 cut(s)	247, 392, 399
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	168, 240
LmnI	GCTCC	4 cut(s)	9, 228, 273, 331
LpnPI	CCDG	8 cut(s)	72, 99, 242, 284, 296, 336, 336, 363
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	255, 382
MabI	ACCWGGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	170, 242
MboI	GATC	2 cut(s)	168, 240
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	144, 336
MluCI	AATT	1 cut(s)	70
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	75, 201
MnlI	CCTC	3 cut(s)	30, 193, 322
Mph1103I	ATGCAT	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	87, 351
MvaI	CCWGG	2 cut(s)	87, 351
MwoI	GCNNNNNNNGC	2 cut(s)	46, 302
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	2 cut(s)	168, 240
NlaIII	CATG	3 cut(s)	247, 392, 399
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	397
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	51, 61
PleI	GAGTC	2 cut(s)	75, 200
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	2 cut(s)	75, 200
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	85, 349
PspGI	CCWGG	2 cut(s)	85, 349
PspN4I	GGNNCC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	336
SatI	GCNGC	2 cut(s)	50, 60
Sau3AI	GATC	2 cut(s)	168, 240
SchI	GAGTC	2 cut(s)	75, 201
ScrFI	CCNGG	2 cut(s)	87, 351
SduI	GDGCHC	2 cut(s)	144, 336
SetI	ASST	8 cut(s)	166, 182, 204, 262, 307, 312, 336, 352
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	255, 382
SfcI	CTRYAG	1 cut(s)	119
SfoI	GGCGCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	60
SspDI	GGCGCC	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	85, 349
StyI	CCWWGG	2 cut(s)	25, 362
TaaI	ACNGT	2 cut(s)	123, 175
TaqI	TCGA	2 cut(s)	195, 252
TasI	AATT	1 cut(s)	70
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	2 cut(s)	102, 149
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	102, 149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.