Prupe.1G192300_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019307
Physical Location & Seq
Reverse (-)
17838341 .. 17839225
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G192300.1

Sequence Viewer

Length: 720 bp
ATGGAAGAAGCTGCTAAGCGCCTCCTCTCCAAAAAGAGAGAGGAGAAGGTCTGGCCAATCCTCTTAATAGTGGGCATTTTCGCATGTATGTTTATACTTTGGTACTTAATGGCGTTGCAGCAACGCTTGCTAGACATGAGGTTCCCCGAGTTCCGGCTTGACTCGGTAGTTGTGTCCCCGTGCCCACTCACCCCGAGTCTTGCTGTTGCTGCTTCTGCTGGTGGCTCCTCCAACAACAGCAACTGGTACTTAACCGCCACATGGGACCTGAGCCTGGTGTTTATTAACCCCAACCACATAATGGGCGTCTCTTACAACAGCTTCCGGGCGGGACTCTTGTACGGGGACAAGGAGAAGAAGGACAAACTCATTCTCGCAATGACTCCATTGCCTCTTCCACCTTTAAACAAGATGAGCCAGACCACCATCAACTTCAGCCTGGCAATGGTGAGGTCATATGTGGGCGAGGACATGGCAAATGAATTACGAATGGGAGGTGGCAGCGGCGGTTGTTATGGGGCGGCGAGATTGGGGGTGAAGCTGTTTGGTGAGCTTACTTTTACGGTGCCGCCGCAAGGCAGTTTTAGTAGAGATCTTTGGAGCCAACAATCTGCCAGAACTACGGGAATCTTCTGCGGCCTTTTCCCCCCGCATTATAACGGCACAGATCAGGGAGGGGAATGCGAAGGTTTCTATTCACAAACTCCGTGTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

240

Amino Acids

26.43

Weight (kDa)

8.45

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 565
AccB7I CCANNNNNTGG 1 cut(s) 301
AciI CCGC 9 cut(s) 255, 329, 504, 507, 521, 569, 572, 636, 650
AcoI YGGCCR 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 3 cut(s) 104, 248, 341
AfiI CCNNNNNNNGG 6 cut(s) 153, 261, 274, 301, 445, 575
AjnI CCWGG 2 cut(s) 273, 438
AluBI AGCT 4 cut(s) 11, 321, 541, 553
AluI AGCT 4 cut(s) 11, 321, 541, 553
Alw26I GTCTC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 243
Ama87I CYCGRG 2 cut(s) 146, 193
AoxI GGCC 2 cut(s) 53, 637
ApeKI GCWGC 4 cut(s) 11, 118, 209, 501
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 4 cut(s) 181, 460, 547, 560
AvaI CYCGRG 2 cut(s) 146, 193
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 565
BbvI GCAGC 3 cut(s) 130, 196, 513
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 2 cut(s) 275, 440
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 22
BglII AGATCT 1 cut(s) 592
BisI GCNGC 9 cut(s) 12, 119, 210, 502, 505, 522, 569, 572, 637
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 9 cut(s) 13, 120, 211, 503, 506, 523, 570, 573, 638
Bme1390I CCNGG 3 cut(s) 275, 326, 440
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 146, 193
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 5 cut(s) 143, 226, 266, 567, 602
BmrFI CCNGG 3 cut(s) 275, 326, 440
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 261, 274, 301, 445, 575
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 3 cut(s) 384, 386, 450
BseBI CCWGG 2 cut(s) 275, 440
BseLI CCNNNNNNNGG 6 cut(s) 153, 261, 274, 301, 445, 575
BseMI GCAATG 3 cut(s) 384, 386, 450
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 3 cut(s) 14, 56, 217
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 3 cut(s) 130, 196, 513
BshFI GGCC 2 cut(s) 55, 639
BshNI GGYRCC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 146, 193
BsiSI CCGG 2 cut(s) 154, 325
BslFI GGGAC 4 cut(s) 160, 278, 345, 359
BslI CCNNNNNNNGG 6 cut(s) 153, 261, 274, 301, 445, 575
BsmAI GTCTC 1 cut(s) 313
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 4 cut(s) 160, 278, 345, 359
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 55, 639
BsoBI CYCGRG 2 cut(s) 146, 193
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 592, 667
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 9 cut(s) 255, 329, 504, 507, 521, 569, 572, 636, 650
BspANI GGCC 2 cut(s) 55, 639
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 5 cut(s) 143, 226, 266, 567, 602
BspT107I GGYRCC 1 cut(s) 565
BsrDI GCAATG 3 cut(s) 384, 386, 450
BsrI ACTGG 1 cut(s) 248
BssMI GATC 2 cut(s) 592, 667
BssNI GRCGYC 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 275, 440
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 15, 269
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 595, 670
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 592, 667
BstMWI GCNNNNNNNGC 3 cut(s) 127, 209, 215
BstNI CCWGG 2 cut(s) 275, 440
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 273, 324, 438
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 130, 196, 513
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 2 cut(s) 55, 639
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 103, 247, 340
CviAII CATG 4 cut(s) 84, 136, 261, 472
CviQI GTAC 3 cut(s) 103, 247, 340
DdeI CTNAG 2 cut(s) 15, 269
DpnI GATC 2 cut(s) 594, 669
DpnII GATC 2 cut(s) 592, 667
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 418
Eco88I CYCGRG 2 cut(s) 146, 193
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 273, 438
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 4 cut(s) 87, 139, 264, 475
FaqI GGGAC 4 cut(s) 160, 278, 345, 359
FatI CATG 4 cut(s) 83, 135, 260, 471
FauI CCCGC 2 cut(s) 322, 657
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 9 cut(s) 12, 119, 210, 502, 505, 522, 569, 572, 637
Fsp4HI GCNGC 9 cut(s) 12, 119, 210, 502, 505, 522, 569, 572, 637
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 20
GluI GCNGC 9 cut(s) 12, 119, 210, 502, 505, 522, 569, 572, 637
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 2 cut(s) 55, 639
HapII CCGG 2 cut(s) 154, 325
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 4 cut(s) 87, 139, 264, 475
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 5 cut(s) 161, 196, 333, 382, 627
HpaII CCGG 2 cut(s) 154, 325
HphI GGTGA 4 cut(s) 181, 460, 547, 560
HpyAV CCTTC 3 cut(s) 40, 352, 680
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 209, 215
HpyF3I CTNAG 2 cut(s) 15, 269
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 4 cut(s) 87, 139, 264, 475
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 592, 667
LmnI GCTCC 2 cut(s) 230, 600
Lsp1109I GCAGC 3 cut(s) 130, 196, 513
MaeI CTAG 1 cut(s) 131
MalI GATC 2 cut(s) 594, 669
MboI GATC 2 cut(s) 592, 667
MboII GAAGA 4 cut(s) 17, 367, 386, 622
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 4 cut(s) 155, 205, 327, 376
MmeI TCCRAC 1 cut(s) 255
Mox20I TGGCCA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 55
MseI TTAA 5 cut(s) 65, 107, 251, 285, 404
Msp20I TGGCCA 1 cut(s) 55
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 2 cut(s) 154, 325
MspR9I CCNGG 3 cut(s) 275, 326, 440
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 2 cut(s) 275, 440
MwoI GCNNNNNNNGC 3 cut(s) 127, 209, 215
NciI CCSGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 592, 667
NlaIII CATG 4 cut(s) 87, 139, 264, 475
NlaIV GGNNCC 5 cut(s) 143, 226, 266, 567, 602
NspI RCATGY 1 cut(s) 87
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 627
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 9 cut(s) 13, 120, 211, 503, 506, 523, 570, 573, 638
PleI GAGTC 4 cut(s) 155, 204, 327, 376
PpsI GAGTC 4 cut(s) 155, 204, 327, 376
PpuMI RGGWCCY 1 cut(s) 265
PsiI TTATAA 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 273, 438
PspGI CCWGG 2 cut(s) 273, 438
PspN4I GGNNCC 5 cut(s) 143, 226, 266, 567, 602
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 3 cut(s) 104, 248, 341
RsaNI GTAC 3 cut(s) 103, 247, 340
SaqAI TTAA 5 cut(s) 65, 107, 251, 285, 404
SatI GCNGC 9 cut(s) 12, 119, 210, 502, 505, 522, 569, 572, 637
Sau3AI GATC 2 cut(s) 592, 667
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 4 cut(s) 155, 205, 327, 376
ScrFI CCNGG 3 cut(s) 275, 326, 440
SduI GDGCHC 1 cut(s) 185
SinI GGWCC 1 cut(s) 265
Sse9I AATT 1 cut(s) 482
SsiI CCGC 9 cut(s) 255, 329, 504, 507, 521, 569, 572, 636, 650
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 273, 324, 438
TaaI ACNGT 1 cut(s) 565
TasI AATT 1 cut(s) 482
TauI GCSGC 5 cut(s) 507, 524, 571, 574, 639
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 5 cut(s) 65, 107, 251, 285, 404
Tru9I TTAA 5 cut(s) 65, 107, 251, 285, 404
TseI GCWGC 4 cut(s) 11, 118, 209, 501
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 1 cut(s) 696
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.