Prupe.1G193600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019307
Physical Location & Seq
Forward (+)
18193540 .. 18194503
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G193600.1

Sequence Viewer

Length: 726 bp
ATGGAAGAAGTTGCTAAGCGCCTCCTCTCCAAAAAGAGAGAGGAGTTTCCCGAATGTTGTAGACTTCGCAACGTCTGGCCCATCCTTTTAATGGTGGGCATTTTCGCTTGTATGTGTATACATTGGTACTTTATGGCGTTGCAGAACCGCTGGCTAGACGTTAGGTTCCCCGAGTTCCGGCTTGACTCGGTAGTTGTGTCCCCCTGCCCACTCACCCCGAGTCTTGCTGTTGGTGGCTCCTCCAACAACAGCTGGTACTTAACCGCCACATGGGACCTGAGCCTGGTGTTTATTAACCCCAACCACATAGTCGGCGTCTCTTACGACAACTTCCGGGCTGGACTCTTGTACGGGGACGAGGAGAAGAAGGACAAACTCATTCTCTCAATGACGCCATTGCCTCTTCCACCTTTAAACAAGATGAGCCAGACCACCATCAACTTCAGCCTGGCAATGGTGAGGTCATATGTGGGCGAGGACATGGCAAATGAATTACTAATGGGAGGCGGCAGCGACGGTTGTTATGGGGCGGCGAGATTGGGGGTGAAGCTGTTTGGTAAGCTTACGTTTATGGTGCCGCCGCAAGGCAGTTTTAGAGATTTTGGGAGCCAACAACCTGTCACAACTACGCGAAAATTCTGCGGCCTTTTCCCCCCGCATTATAACGGCACAGGTCAGGGAGGGGAATGCGAAGGTTTCCCTTCACAAACTCCGTGTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

242

Amino Acids

26.94

Weight (kDa)

8.02

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 2 cut(s) 61, 118
AccII CGCG 1 cut(s) 631
AciI CCGC 8 cut(s) 148, 264, 507, 530, 578, 581, 642, 656
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 427
AcyI GRCGYC 2 cut(s) 315, 392
AfaI GTAC 3 cut(s) 128, 257, 350
AfiI CCNNNNNNNGG 6 cut(s) 91, 177, 270, 283, 454, 584
AjnI CCWGG 2 cut(s) 282, 447
AluBI AGCT 3 cut(s) 252, 550, 562
AluI AGCT 3 cut(s) 252, 550, 562
Alw26I GTCTC 1 cut(s) 322
Ama87I CYCGRG 2 cut(s) 170, 217
AoxI GGCC 2 cut(s) 77, 643
ApeKI GCWGC 1 cut(s) 510
ApoI RAATTY 1 cut(s) 635
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 78, 274
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 205, 469, 556
AvaI CYCGRG 2 cut(s) 170, 217
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 574
BbvI GCAGC 1 cut(s) 522
BccI CCATC 2 cut(s) 89, 443
BceAI ACGGC 1 cut(s) 682
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 2 cut(s) 284, 449
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 6 cut(s) 508, 511, 531, 578, 581, 643
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 6 cut(s) 509, 512, 532, 579, 582, 644
Bme1390I CCNGG 3 cut(s) 284, 335, 449
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 2 cut(s) 170, 217
BmgT120I GGNCC 2 cut(s) 78, 274
BmiI GGNNCC 5 cut(s) 167, 238, 275, 576, 608
BmrFI CCNGG 3 cut(s) 284, 335, 449
Bpu10I CCTNAGC 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 315, 392
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 177, 270, 283, 454, 584
Bse3DI GCAATG 2 cut(s) 395, 459
BseBI CCWGG 2 cut(s) 284, 449
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 6 cut(s) 91, 177, 270, 283, 454, 584
BseMI GCAATG 2 cut(s) 395, 459
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 4 cut(s) 14, 56, 229, 374
BseXI GCAGC 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 631
BshFI GGCC 2 cut(s) 79, 645
BshNI GGYRCC 1 cut(s) 574
BsiHKCI CYCGRG 2 cut(s) 170, 217
BsiSI CCGG 2 cut(s) 178, 334
BslFI GGGAC 3 cut(s) 184, 287, 368
BslI CCNNNNNNNGG 6 cut(s) 91, 177, 270, 283, 454, 584
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 3 cut(s) 184, 287, 368
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 2 cut(s) 79, 645
BsoBI CYCGRG 2 cut(s) 170, 217
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 8 cut(s) 148, 264, 507, 530, 578, 581, 642, 656
BspANI GGCC 2 cut(s) 79, 645
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 631
BspLI GGNNCC 5 cut(s) 167, 238, 275, 576, 608
BspT107I GGYRCC 1 cut(s) 574
BsrDI GCAATG 2 cut(s) 395, 459
BssNAI GTATAC 1 cut(s) 119
BssNI GRCGYC 2 cut(s) 315, 392
Bst1107I GTATAC 1 cut(s) 119
Bst2UI CCWGG 2 cut(s) 284, 449
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 2 cut(s) 315, 392
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 15, 278
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 631
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 322
BstNI CCWGG 2 cut(s) 284, 449
BstSCI CCNGG 3 cut(s) 282, 333, 447
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 1 cut(s) 522
BstZ17I GTATAC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 79, 645
BtsCI GGATG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 78, 274
CseI GACGC 2 cut(s) 304, 400
Csp6I GTAC 3 cut(s) 127, 256, 349
CviAII CATG 2 cut(s) 270, 481
CviQI GTAC 3 cut(s) 127, 256, 349
DdeI CTNAG 2 cut(s) 15, 278
DraI TTTAAA 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 170, 217
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 282, 447
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 2 cut(s) 273, 484
FaqI GGGAC 3 cut(s) 184, 287, 368
FatI CATG 2 cut(s) 269, 480
FauI CCCGC 1 cut(s) 663
FauNDI CATATG 1 cut(s) 466
FblI GTMKAC 2 cut(s) 61, 118
Fnu4HI GCNGC 6 cut(s) 508, 511, 531, 578, 581, 643
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 6 cut(s) 508, 511, 531, 578, 581, 643
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 20
GluI GCNGC 6 cut(s) 508, 511, 531, 578, 581, 643
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 2 cut(s) 79, 645
HapII CCGG 2 cut(s) 178, 334
HgaI GACGC 2 cut(s) 304, 400
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 2 cut(s) 315, 392
Hin1II CATG 2 cut(s) 273, 484
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 3 cut(s) 185, 220, 342
HpaII CCGG 2 cut(s) 178, 334
HphI GGTGA 3 cut(s) 205, 469, 556
Hpy166II GTNNAC 2 cut(s) 62, 119
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 62, 119
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 3 cut(s) 361, 686, 711
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 3 cut(s) 72, 159, 566
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 15, 278
HpySE526I ACGT 3 cut(s) 72, 159, 566
Hsp92I GRCGYC 2 cut(s) 315, 392
Hsp92II CATG 2 cut(s) 273, 484
HspAI GCGC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 242, 606
Lsp1109I GCAGC 1 cut(s) 522
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 72, 159, 566
MaeIII GTNAC 1 cut(s) 619
MboII GAAGA 3 cut(s) 17, 376, 395
MluCI AATT 2 cut(s) 491, 635
MlyI GAGTC 3 cut(s) 179, 229, 336
MmeI TCCRAC 1 cut(s) 267
MseI TTAA 4 cut(s) 89, 260, 294, 413
MspA1I CMGCKG 2 cut(s) 150, 252
MspI CCGG 2 cut(s) 178, 334
MspR9I CCNGG 3 cut(s) 284, 335, 449
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 284, 449
MvnI CGCG 1 cut(s) 631
NciI CCSGG 1 cut(s) 335
NdeI CATATG 1 cut(s) 466
NlaIII CATG 2 cut(s) 273, 484
NlaIV GGNNCC 5 cut(s) 167, 238, 275, 576, 608
NmuCI GTSAC 1 cut(s) 619
PctI GAATGC 1 cut(s) 692
PkrI GCNGC 6 cut(s) 509, 512, 532, 579, 582, 644
PleI GAGTC 3 cut(s) 179, 228, 336
PpsI GAGTC 3 cut(s) 179, 228, 336
PpuMI RGGWCCY 1 cut(s) 274
PsiI TTATAA 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 282, 447
PspGI CCWGG 2 cut(s) 282, 447
PspN4I GGNNCC 5 cut(s) 167, 238, 275, 576, 608
PspPI GGNCC 2 cut(s) 78, 274
PspPPI RGGWCCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 252
RsaI GTAC 3 cut(s) 128, 257, 350
RsaNI GTAC 3 cut(s) 127, 256, 349
SaqAI TTAA 4 cut(s) 89, 260, 294, 413
SatI GCNGC 6 cut(s) 508, 511, 531, 578, 581, 643
Sau96I GGNCC 2 cut(s) 78, 274
SchI GAGTC 3 cut(s) 179, 229, 336
ScrFI CCNGG 3 cut(s) 284, 335, 449
SinI GGWCC 1 cut(s) 274
Sse9I AATT 2 cut(s) 491, 635
SsiI CCGC 8 cut(s) 148, 264, 507, 530, 578, 581, 642, 656
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 282, 333, 447
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 3 cut(s) 75, 162, 569
TasI AATT 2 cut(s) 491, 635
TauI GCSGC 5 cut(s) 510, 533, 580, 583, 645
Tru1I TTAA 4 cut(s) 89, 260, 294, 413
Tru9I TTAA 4 cut(s) 89, 260, 294, 413
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 1 cut(s) 510
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmiI GTMKAC 2 cut(s) 61, 118
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.