Prupe.1G194000_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019307
Physical Location & Seq
Forward (+)
18279870 .. 18280624
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G194000.1

Sequence Viewer

Length: 564 bp
ATGGAAGAAGCTGCTAAGCACCTCCTCTCCAAAAAGAGAGAGGAGAAGGTCTGGCCCATCCTCTTAATAGTGGGCATTTTCGCATGTATGTTTATACTTTGGTACTTAATGGCGTTGCAGCACCGCTTGCTAGACATCAGGTACCCCGATTTCCGGCTTGACTCGGTAGTTGTGTCCCCGTGCCCACTCACCCCGAGTCTTGCTGTTGCTGCTTCCGCTGGTGGCTCCTCCAACAACAGCAACTGGTTCTTAACCGCCACATGGGACCTGAGCCTGGTGTTTATTAACCCCAACCACATACTGGGTTTCTCTTACAACAACTTCCGGGCGGGACTCTTGTACGGGGACGAGGAGAAGAAGGACAAACTCATTCTCGCAATGACGCCATTGCCTCTTCCACCTTTAAACAAGATGAGCCAGACCACCATCAACTTCAGCCTGGCAATGGTGAGGTCATATGTGGGCGAGGACATGGCAAATGAATTACTAATGGGAGGTGGCAGCGGTGGTTGTTATGGGGCGGCGAGATTGGGGGTGAAGCTGTTAAAGAGAGTAGTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

8.77

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 301
AciI CCGC 6 cut(s) 124, 216, 255, 329, 504, 521
AcuI CTGAAG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 3 cut(s) 104, 143, 341
AfiI CCNNNNNNNGG 5 cut(s) 153, 261, 274, 301, 445
AjnI CCWGG 2 cut(s) 273, 438
AluBI AGCT 3 cut(s) 11, 541, 561
AluI AGCT 3 cut(s) 11, 541, 561
AlwNI CAGNNNCTG 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 4 cut(s) 11, 118, 209, 501
Asp718I GGTACC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 54, 265
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 181, 460, 547
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 130, 196, 513
BccI CCATC 2 cut(s) 65, 434
BciT130I CCWGG 2 cut(s) 275, 440
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 1 cut(s) 131
BisI GCNGC 5 cut(s) 12, 119, 210, 502, 522
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 5 cut(s) 13, 120, 211, 503, 523
Bme1390I CCNGG 3 cut(s) 275, 326, 440
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 54, 265
BmiI GGNNCC 3 cut(s) 143, 226, 266
BmrFI CCNGG 3 cut(s) 275, 326, 440
BmrI ACTGGG 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 261, 274, 301, 445
Bse1I ACTGG 2 cut(s) 248, 306
Bse3DI GCAATG 3 cut(s) 384, 386, 450
BseBI CCWGG 2 cut(s) 275, 440
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 153, 261, 274, 301, 445
BseMI GCAATG 3 cut(s) 384, 386, 450
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 248, 306
BseRI GAGGAG 4 cut(s) 14, 56, 217, 365
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 3 cut(s) 130, 196, 513
BshFI GGCC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 154, 325
BslFI GGGAC 4 cut(s) 160, 278, 345, 359
BslI CCNNNNNNNGG 5 cut(s) 153, 261, 274, 301, 445
BsmFI GGGAC 4 cut(s) 160, 278, 345, 359
BsnI GGCC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 185
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 6 cut(s) 124, 216, 255, 329, 504, 521
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 143, 226, 266
BspT107I GGYRCC 1 cut(s) 141
BsrDI GCAATG 3 cut(s) 384, 386, 450
BsrI ACTGG 2 cut(s) 248, 306
BssNI GRCGYC 1 cut(s) 383
Bst2UI CCWGG 2 cut(s) 275, 440
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 15, 269
BstF5I GGATG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 127, 209, 215
BstNI CCWGG 2 cut(s) 275, 440
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 273, 324, 438
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 130, 196, 513
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 54, 265
CseI GACGC 1 cut(s) 391
Csp6I GTAC 3 cut(s) 103, 142, 340
CviAII CATG 3 cut(s) 84, 261, 472
CviJI RGCY 9 cut(s) 11, 55, 157, 225, 273, 417, 438, 541, 561
CviKI_1 RGCY 9 cut(s) 11, 55, 157, 225, 273, 417, 438, 541, 561
CviQI GTAC 3 cut(s) 103, 142, 340
DdeI CTNAG 2 cut(s) 15, 269
DraI TTTAAA 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 273, 438
FaeI CATG 3 cut(s) 87, 264, 475
FaiI YATR 9 cut(s) 85, 89, 95, 262, 299, 457, 459, 473, 516
FaqI GGGAC 4 cut(s) 160, 278, 345, 359
FatI CATG 3 cut(s) 83, 260, 471
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 5 cut(s) 12, 119, 210, 502, 522
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 5 cut(s) 12, 119, 210, 502, 522
FspBI CTAG 1 cut(s) 131
GluI GCNGC 5 cut(s) 12, 119, 210, 502, 522
HaeIII GGCC 1 cut(s) 55
HapII CCGG 2 cut(s) 154, 325
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 3 cut(s) 87, 264, 475
HinfI GANTC 3 cut(s) 161, 196, 333
HpaII CCGG 2 cut(s) 154, 325
HphI GGTGA 3 cut(s) 181, 460, 547
HpyAV CCTTC 2 cut(s) 40, 352
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 209, 215
HpyF3I CTNAG 2 cut(s) 15, 269
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 3 cut(s) 87, 264, 475
KpnI GGTACC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 130, 196, 513
MaeI CTAG 1 cut(s) 131
MboII GAAGA 3 cut(s) 17, 367, 386
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 482
MlyI GAGTC 3 cut(s) 155, 205, 327
MmeI TCCRAC 1 cut(s) 255
MseI TTAA 6 cut(s) 65, 107, 251, 285, 404, 545
MspA1I CMGCKG 2 cut(s) 218, 504
MspI CCGG 2 cut(s) 154, 325
MspR9I CCNGG 3 cut(s) 275, 326, 440
MvaI CCWGG 2 cut(s) 275, 440
MwoI GCNNNNNNNGC 3 cut(s) 127, 209, 215
NciI CCSGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 457
NlaIII CATG 3 cut(s) 87, 264, 475
NlaIV GGNNCC 3 cut(s) 143, 226, 266
NspI RCATGY 1 cut(s) 87
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 5 cut(s) 13, 120, 211, 503, 523
PleI GAGTC 3 cut(s) 155, 204, 327
PpsI GAGTC 3 cut(s) 155, 204, 327
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 273, 438
PspGI CCWGG 2 cut(s) 273, 438
PspN4I GGNNCC 3 cut(s) 143, 226, 266
PspPI GGNCC 2 cut(s) 54, 265
PspPPI RGGWCCY 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 243
RsaI GTAC 3 cut(s) 104, 143, 341
RsaNI GTAC 3 cut(s) 103, 142, 340
SaqAI TTAA 6 cut(s) 65, 107, 251, 285, 404, 545
SatI GCNGC 5 cut(s) 12, 119, 210, 502, 522
Sau96I GGNCC 2 cut(s) 54, 265
SchI GAGTC 3 cut(s) 155, 205, 327
ScrFI CCNGG 3 cut(s) 275, 326, 440
SduI GDGCHC 1 cut(s) 185
SinI GGWCC 1 cut(s) 265
Sse9I AATT 1 cut(s) 482
SsiI CCGC 6 cut(s) 124, 216, 255, 329, 504, 521
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 273, 324, 438
TasI AATT 1 cut(s) 482
TauI GCSGC 1 cut(s) 524
Tru1I TTAA 6 cut(s) 65, 107, 251, 285, 404, 545
Tru9I TTAA 6 cut(s) 65, 107, 251, 285, 404, 545
TseI GCWGC 4 cut(s) 11, 118, 209, 501
TspDTI ATGAA 1 cut(s) 495
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.