Prupe.1G192400_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019307
Physical Location & Seq
Reverse (-)
17947117 .. 17947947
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G192400.1

Sequence Viewer

Length: 744 bp
ATGGAAGAAGCTGCTATGCGCCTCCTCTCCAAGAAGAGAAAGGAGTTCCCTGAATGTTGTAGACTTCGCAACGTCTGGCCCATCCTCTTAATGGGGGGCATTTTCGCGTGTTTGTCGATACTTTTCTACTTAATGGCGTTGCAGAACCGCTTGCTAGACCTCAAGTTCCCCAAGTTCCGGCTTGACTCGGTAGTTGTGTCCCCATGCCCACTCACCCCGAGTCTTGCTGTCGCTGCTTCTGCTGGTGGCTCCTCCAACAACAACAATTGGTACTTAACTGCCACATGGGACCTGAGCCTGGTGTTTGTTAACCCCAACCACATATTGGGCGTCTCTTACAAAAACTTCCGGGCGGGACTCTTGTACGGGGACGAGGAGAAGGAGGACAAACTCATTCTCGCAATGACGCCATTGTCTCTTCCACCTTTAAACAAGATGAGCCAGACCACCATCAACTTCAGCCTAGCAATGGTTAGGTCATATGTGGGCGAGGACATGGCAAATGAATTACTAATGGGAGGTGGCAGCGACGGTTGTTATGGGGCGGCGAGATTAGGGGTGAAGCTGTTTGGAGAGCTTGAGTTTATGGTGCCGCCACAAGGCAGTTTTACTAGAGATCTTTGGAGCCAACAAGCTATCAGAACTACGGGAAAATTCTGCGGCCTTTTCCCCCCGCATTATAACGGCACAGGTCAGGGAGGGGGATGCGAAGGTTTCCGTTCACAAACTCCGTGTAGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

248

Amino Acids

27.24

Weight (kDa)

8.56

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AasI GACNNNNNNGTC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 1 cut(s) 61
AccII CGCG 1 cut(s) 107
AciI CCGC 6 cut(s) 148, 353, 545, 593, 660, 674
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 1 cut(s) 442
AcyI GRCGYC 2 cut(s) 330, 407
AfaI GTAC 2 cut(s) 272, 365
AfiI CCNNNNNNNGG 6 cut(s) 91, 177, 298, 325, 469, 599
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 4 cut(s) 11, 565, 577, 635
AluI AGCT 4 cut(s) 11, 565, 577, 635
Alw26I GTCTC 2 cut(s) 337, 420
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 2 cut(s) 77, 661
ApeKI GCWGC 3 cut(s) 11, 233, 525
ApoI RAATTY 1 cut(s) 653
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 78, 289
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 205, 571
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 589
BbvI GCAGC 2 cut(s) 220, 537
BccI CCATC 2 cut(s) 89, 458
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 337, 420
BfaI CTAG 3 cut(s) 155, 464, 612
BglII AGATCT 1 cut(s) 616
BisI GCNGC 6 cut(s) 12, 234, 526, 546, 593, 661
BlsI GCNGC 6 cut(s) 13, 235, 527, 547, 594, 662
Bme1390I CCNGG 2 cut(s) 299, 350
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 78, 289
BmiI GGNNCC 4 cut(s) 250, 290, 591, 626
BmrFI CCNGG 2 cut(s) 299, 350
BmsI GCATC 2 cut(s) 695, 728
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 146, 599
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 2 cut(s) 330, 407
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 177, 298, 325, 469, 599
Bse3DI GCAATG 2 cut(s) 408, 474
BseBI CCWGG 1 cut(s) 299
BseGI GGATG 2 cut(s) 81, 710
BseLI CCNNNNNNNGG 6 cut(s) 91, 177, 298, 325, 469, 599
BseMI GCAATG 2 cut(s) 408, 474
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 3 cut(s) 14, 241, 389
BseXI GCAGC 2 cut(s) 220, 537
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 79, 663
BshNI GGYRCC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 2 cut(s) 178, 349
BslFI GGGAC 4 cut(s) 184, 302, 369, 383
BslI CCNNNNNNNGG 6 cut(s) 91, 177, 298, 325, 469, 599
BsmAI GTCTC 2 cut(s) 337, 420
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 4 cut(s) 184, 302, 369, 383
BsnI GGCC 2 cut(s) 79, 663
BsoBI CYCGRG 1 cut(s) 217
Bsp143I GATC 1 cut(s) 616
BspACI CCGC 6 cut(s) 148, 353, 545, 593, 660, 674
BspANI GGCC 2 cut(s) 79, 663
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 4 cut(s) 250, 290, 591, 626
BspT107I GGYRCC 1 cut(s) 589
BsrDI GCAATG 2 cut(s) 408, 474
BssMI GATC 1 cut(s) 616
BssNI GRCGYC 2 cut(s) 330, 407
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 29, 423
BstACI GRCGYC 2 cut(s) 330, 407
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 81, 710
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 619
BstMAI GTCTC 2 cut(s) 337, 420
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 233, 239
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 297, 348
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 220, 537
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 2 cut(s) 79, 663
BtsCI GGATG 2 cut(s) 81, 710
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 78, 289
CseI GACGC 2 cut(s) 319, 415
Csp6I GTAC 2 cut(s) 271, 364
CviAII CATG 3 cut(s) 204, 285, 496
CviQI GTAC 2 cut(s) 271, 364
DdeI CTNAG 1 cut(s) 293
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
DraI TTTAAA 1 cut(s) 429
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 29, 423
EarI CTCTTC 2 cut(s) 29, 423
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 207, 288, 499
FaqI GGGAC 4 cut(s) 184, 302, 369, 383
FatI CATG 3 cut(s) 203, 284, 495
FauI CCCGC 2 cut(s) 346, 681
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 6 cut(s) 12, 234, 526, 546, 593, 661
FokI GGATG 2 cut(s) 68, 717
Fsp4HI GCNGC 6 cut(s) 12, 234, 526, 546, 593, 661
FspBI CTAG 3 cut(s) 155, 464, 612
GlaI GCGC 1 cut(s) 20
GluI GCNGC 6 cut(s) 12, 234, 526, 546, 593, 661
HaeIII GGCC 2 cut(s) 79, 663
HapII CCGG 2 cut(s) 178, 349
HgaI GACGC 2 cut(s) 319, 415
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 2 cut(s) 330, 407
Hin1II CATG 3 cut(s) 207, 288, 499
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 185, 220, 357
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 2 cut(s) 178, 349
HphI GGTGA 2 cut(s) 205, 571
Hpy166II GTNNAC 3 cut(s) 62, 310, 722
Hpy188I TCNGA 1 cut(s) 641
Hpy8I GTNNAC 3 cut(s) 62, 310, 722
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 2 cut(s) 373, 704
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 239
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 330, 407
Hsp92II CATG 3 cut(s) 207, 288, 499
HspAI GCGC 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 616
LmnI GCTCC 2 cut(s) 254, 624
Lsp1109I GCAGC 2 cut(s) 220, 537
LweI GCATC 2 cut(s) 695, 728
MaeI CTAG 3 cut(s) 155, 464, 612
MaeII ACGT 1 cut(s) 72
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 3 cut(s) 17, 46, 410
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 616
MluCI AATT 3 cut(s) 265, 506, 653
MlyI GAGTC 3 cut(s) 179, 229, 351
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 5 cut(s) 89, 131, 275, 309, 428
MspI CCGG 2 cut(s) 178, 349
MspR9I CCNGG 2 cut(s) 299, 350
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 233, 239
NciI CCSGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 481
NdeII GATC 1 cut(s) 616
NlaIII CATG 3 cut(s) 207, 288, 499
NlaIV GGNNCC 4 cut(s) 250, 290, 591, 626
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 6 cut(s) 13, 235, 527, 547, 594, 662
PleI GAGTC 3 cut(s) 179, 228, 351
PpsI GAGTC 3 cut(s) 179, 228, 351
PpuMI RGGWCCY 1 cut(s) 289
PsiI TTATAA 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 4 cut(s) 250, 290, 591, 626
PspPI GGNCC 2 cut(s) 78, 289
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 272, 365
RsaNI GTAC 2 cut(s) 271, 364
SaqAI TTAA 5 cut(s) 89, 131, 275, 309, 428
SatI GCNGC 6 cut(s) 12, 234, 526, 546, 593, 661
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 2 cut(s) 78, 289
SchI GAGTC 3 cut(s) 179, 229, 351
ScrFI CCNGG 2 cut(s) 299, 350
SfaNI GCATC 2 cut(s) 695, 728
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 2 cut(s) 161, 578
SmoI CTYRAG 2 cut(s) 161, 578
Sse9I AATT 3 cut(s) 265, 506, 653
SsiI CCGC 6 cut(s) 148, 353, 545, 593, 660, 674
SspMI CTAG 3 cut(s) 155, 464, 612
StyD4I CCNGG 2 cut(s) 297, 348
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 265, 506, 653
TauI GCSGC 3 cut(s) 548, 595, 663
Tru1I TTAA 5 cut(s) 89, 131, 275, 309, 428
Tru9I TTAA 5 cut(s) 89, 131, 275, 309, 428
TseI GCWGC 3 cut(s) 11, 233, 525
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 2 cut(s) 707, 720
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 322
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 3 cut(s) 155, 464, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.