pycom111g04870

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0019307
Physical Location & Seq
Reverse (-)
2952322 .. 2952996
675 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04870.1

Sequence Viewer

Length: 675 bp
ATGGAAGAAAAGCCTGAGAATCCCTCCTCCGACCATTGGTACCATTGGCCTGAAGTAATTAAGCCCCTCTTGTTAATCCTCTTCGTAGGCTGCTTGAGCATAATCTTTTACATCCTGGCGGCGCACGAACACTCGCTCAACCCCTTGGCCCCCGAGTTCCGCATCTACTCGGCCGCCGTGTCCCCGTGCCCACTCGCCCCGACCCCTCCTTCCGCCGCCAACCGCTACCATTCCTTAACCGCCACGTGGAACTTTAATCTGGTCTTCGCAAACCCCAACACCAAACTCGACTTGTACTACGAGAGCCTCCAGGCAGATCTCTTCTACGGGGACGAGGAGACGAAGGACAAACTGATGCTCGCGACGACGCCGTTGCCTCTTTTGGCTTTAACCATCATGAACCAGACCACTTTCAATGTCACCTTCGCGACGGCGAGGGCCTACGTCAGCGATGACGCCGCCAAGGAATTAATAATCTCCTCTAACTCCTCGTCAGCAGGTGATGGTTGTTATGGGTCGGCCAAATTGGGGGTGAAGCTGACCGGATATTTCAGAATTGATAAAGGTCTCTGGTTTTCGCGTTACTTCTGCGACCTTTCTCCCCCCAATTACAACGTCACCGATCAGTCAAGCCAATGTGAAATTTATAATACTGTTTATCGGTGTGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

225

Amino Acids

25.11

Weight (kDa)

5.15

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AarI CACCTGC 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 488
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 39
AccII CGCG 3 cut(s) 362, 428, 580
AciI CCGC 8 cut(s) 119, 160, 174, 213, 216, 223, 240, 459
AcoI YGGCCR 2 cut(s) 171, 519
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 72
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 2 cut(s) 368, 456
AfaI GTAC 2 cut(s) 41, 296
AfiI CCNNNNNNNGG 3 cut(s) 36, 246, 528
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 2 cut(s) 114, 309
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
Alw26I GTCTC 2 cut(s) 332, 572
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 5 cut(s) 47, 147, 171, 438, 519
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 642
AseI ATTAAT 1 cut(s) 470
Asp718I GGTACC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 148, 438
AsuHPI GGTGA 4 cut(s) 412, 512, 544, 610
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 39
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 401, 497
BceAI ACGGC 3 cut(s) 161, 355, 447
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 2 cut(s) 116, 311
BcoDI GTCTC 2 cut(s) 332, 572
BfuAI ACCTGC 1 cut(s) 488
BglII AGATCT 1 cut(s) 316
BisI GCNGC 5 cut(s) 91, 120, 174, 216, 459
BlsI GCNGC 5 cut(s) 92, 121, 175, 217, 460
Bme1390I CCNGG 2 cut(s) 116, 311
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 148, 438
BmiI GGNNCC 2 cut(s) 41, 150
BmrFI CCNGG 2 cut(s) 116, 311
BmsI GCATC 2 cut(s) 171, 345
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 368, 456
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 144, 462
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 246, 528
BseBI CCWGG 2 cut(s) 116, 311
BseDI CCNNGG 2 cut(s) 144, 462
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 36, 246, 528
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 4 cut(s) 16, 350, 469, 478
BseSI GKGCMC 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 3 cut(s) 362, 428, 580
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 5 cut(s) 49, 149, 173, 440, 521
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 543
BslFI GGGAC 2 cut(s) 166, 344
BslI CCNNNNNNNGG 3 cut(s) 36, 246, 528
BsmAI GTCTC 2 cut(s) 332, 572
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 166, 344
BsnI GGCC 5 cut(s) 49, 149, 173, 440, 521
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 316, 622
Bsp68I TCGCGA 2 cut(s) 362, 428
BspACI CCGC 8 cut(s) 119, 160, 174, 213, 216, 223, 240, 459
BspANI GGCC 5 cut(s) 49, 149, 173, 440, 521
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 3 cut(s) 362, 428, 580
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 41, 150
BspMI ACCTGC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 144, 462
BssMI GATC 2 cut(s) 316, 622
BssNI GRCGYC 2 cut(s) 368, 456
BssT1I CCWWGG 2 cut(s) 144, 462
Bst2UI CCWGG 2 cut(s) 116, 311
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 86, 326
BstACI GRCGYC 2 cut(s) 368, 456
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 3 cut(s) 362, 428, 580
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 319, 625
BstMAI GTCTC 2 cut(s) 332, 572
BstMBI GATC 2 cut(s) 316, 622
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 116, 311
BstSCI CCNGG 2 cut(s) 114, 309
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 3 cut(s) 362, 428, 580
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 5 cut(s) 49, 149, 173, 440, 521
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 111
BtuMI TCGCGA 2 cut(s) 362, 428
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 148, 438
CseI GACGC 2 cut(s) 376, 464
Csp6I GTAC 2 cut(s) 40, 295
CviAII CATG 1 cut(s) 397
CviQI GTAC 2 cut(s) 40, 295
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 318, 624
DpnII GATC 2 cut(s) 316, 622
EaeI YGGCCR 2 cut(s) 171, 519
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 86, 326
EarI CTCTTC 2 cut(s) 86, 326
EciI GGCGGA 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 144, 462
Eco31I GGTCTC 1 cut(s) 572
Eco52I CGGCCG 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 72
Eco72I CACGTG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 114, 309
EcoT14I CCWWGG 2 cut(s) 144, 462
ErhI CCWWGG 2 cut(s) 144, 462
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 1 cut(s) 400
FaiI YATR 5 cut(s) 101, 398, 513, 648, 670
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 2 cut(s) 166, 344
FatI CATG 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 91, 120, 174, 216, 459
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 5 cut(s) 91, 120, 174, 216, 459
GlaI GCGC 1 cut(s) 123
GluI GCNGC 5 cut(s) 91, 120, 174, 216, 459
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 5 cut(s) 49, 149, 173, 440, 521
HapII CCGG 1 cut(s) 543
HgaI GACGC 2 cut(s) 376, 464
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 2 cut(s) 368, 456
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 543
HphI GGTGA 4 cut(s) 412, 512, 544, 610
Hpy188I TCNGA 2 cut(s) 31, 554
Hpy188III TCNNGA 3 cut(s) 361, 397, 427
Hpy99I CGWCG 3 cut(s) 367, 370, 433
HpyAV CCTTC 3 cut(s) 219, 337, 433
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 3 cut(s) 245, 444, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 3 cut(s) 245, 444, 615
Hsp92I GRCGYC 2 cut(s) 368, 456
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 1 cut(s) 122
KpnI GGTACC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 316, 622
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 171, 345
MaeII ACGT 3 cut(s) 245, 444, 615
MaeIII GTNAC 3 cut(s) 418, 581, 616
MalI GATC 2 cut(s) 318, 624
MboI GATC 2 cut(s) 316, 622
MboII GAAGA 4 cut(s) 17, 73, 256, 313
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 6 cut(s) 57, 467, 524, 555, 607, 642
MmeI TCCRAC 1 cut(s) 54
MseI TTAA 6 cut(s) 60, 74, 236, 255, 389, 470
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 116, 311
MvaI CCWGG 2 cut(s) 116, 311
MvnI CGCG 3 cut(s) 362, 428, 580
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 316, 622
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 41, 150
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 418, 616
NruI TCGCGA 2 cut(s) 362, 428
PagI TCATGA 1 cut(s) 396
PaqCI CACCTGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 92, 121, 175, 217, 460
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 470
PsiI TTATAA 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 114, 309
PspCI CACGTG 1 cut(s) 246
PspGI CCWGG 2 cut(s) 114, 309
PspN4I GGNNCC 2 cut(s) 41, 150
PspPI GGNCC 2 cut(s) 148, 438
PsuI RGATCY 1 cut(s) 316
RruI TCGCGA 2 cut(s) 362, 428
RsaI GTAC 2 cut(s) 41, 296
RsaNI GTAC 2 cut(s) 40, 295
SaqAI TTAA 6 cut(s) 60, 74, 236, 255, 389, 470
SatI GCNGC 5 cut(s) 91, 120, 174, 216, 459
Sau3AI GATC 2 cut(s) 316, 622
Sau96I GGNCC 2 cut(s) 148, 438
ScrFI CCNGG 2 cut(s) 116, 311
SduI GDGCHC 1 cut(s) 191
SetI ASST 8 cut(s) 248, 425, 447, 502, 540, 568, 597, 618
SfaNI GCATC 2 cut(s) 171, 345
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 6 cut(s) 57, 467, 524, 555, 607, 642
SsiI CCGC 8 cut(s) 119, 160, 174, 213, 216, 223, 240, 459
StyD4I CCNGG 2 cut(s) 114, 309
StyI CCWWGG 2 cut(s) 144, 462
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 3 cut(s) 248, 447, 618
TaqI TCGA 1 cut(s) 288
TasI AATT 6 cut(s) 57, 467, 524, 555, 607, 642
TatI WGTACW 1 cut(s) 294
TauI GCSGC 4 cut(s) 122, 176, 218, 461
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 6 cut(s) 60, 74, 236, 255, 389, 470
Tru9I TTAA 6 cut(s) 60, 74, 236, 255, 389, 470
TseFI GTSAC 2 cut(s) 418, 616
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 2 cut(s) 418, 616
TspDTI ATGAA 1 cut(s) 413
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.