pycom08g18480

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0019307
Physical Location & Seq
Reverse (-)
18648096 .. 18648365
270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18480.1

Sequence Viewer

Length: 270 bp
ATGGGAATGGCAAAGTCTTCCTCCGCCGGACGGCTTTGTAAAATTGTTTTCTTCTGCTTCGCTGCGCTATTGGCAATCATTGTCGCCACAGCCTTGGCGTGGACTTTATTGCGTGACGCGAAGCTCAGCCCTGAATTCCCTGAGTTCCGGGTCGACTTGGTAGCCGTGTCGCCGTGCCCACTCACCGCCGCATCCAGCAGCGAGTACTTAACCGCCACGTGGGACTTGACGCTGGTTGCTATAAATCTCAACCGGAAGCTGGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

90

Amino Acids

9.63

Weight (kDa)

7.7

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 24, 186, 189, 213
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 219
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 30, 99, 219, 259
AluBI AGCT 2 cut(s) 124, 259
AluI AGCT 2 cut(s) 124, 259
ApeKI GCWGC 2 cut(s) 62, 198
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 49, 210
BceAI ACGGC 3 cut(s) 47, 149, 157
BcnI CCSGG 1 cut(s) 149
BisI GCNGC 3 cut(s) 63, 189, 199
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 3 cut(s) 64, 190, 200
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 9
Bpu1102I GCTNAGC 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 99, 219, 259
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 30, 99, 219, 259
BseMII CTCAG 2 cut(s) 132, 139
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 2 cut(s) 49, 210
Bsh1236I CGCG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 27, 148, 253
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 4 cut(s) 30, 99, 219, 259
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 179
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 4 cut(s) 24, 186, 189, 213
BspCNI CTCAG 2 cut(s) 133, 138
BspFNI CGCG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 125, 141
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 179
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 49, 210
BstV2I GAAGAC 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 191
CfoI GCGC 1 cut(s) 67
CseI GACGC 2 cut(s) 125, 238
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 6 cut(s) 34, 92, 124, 129, 164, 259
CviKI_1 RGCY 6 cut(s) 34, 92, 124, 129, 164, 259
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 125, 141
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 93
Eco72I CACGTG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 1 cut(s) 242
FaqI GGGAC 1 cut(s) 236
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 63, 189, 199
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 63, 189, 199
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 63, 189, 199
HapII CCGG 3 cut(s) 27, 148, 253
HgaI GACGC 2 cut(s) 125, 238
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HpaII CCGG 3 cut(s) 27, 148, 253
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 102, 154
Hpy8I GTNNAC 2 cut(s) 102, 154
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 125, 141
HpySE526I ACGT 1 cut(s) 218
HspAI GCGC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 40, 144, 153, 161, 208, 218, 245, 266
Lsp1109I GCAGC 2 cut(s) 49, 210
LweI GCATC 1 cut(s) 200
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 2 cut(s) 9, 43
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 42, 134
MnlI CCTC 1 cut(s) 31
MseI TTAA 1 cut(s) 209
MspI CCGG 3 cut(s) 27, 148, 253
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 64, 190, 200
PmaCI CACGTG 1 cut(s) 219
PmlI CACGTG 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 219
PspCI CACGTG 1 cut(s) 219
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 63, 189, 199
ScaI AGTACT 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 126, 221, 261
SfaNI GCATC 1 cut(s) 200
Sse9I AATT 2 cut(s) 42, 134
SsiI CCGC 4 cut(s) 24, 186, 189, 213
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 42, 134
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 62, 198
Tsp45I GTSAC 1 cut(s) 113
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.