Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008130

Physical Location & Seq

Genomic Coordinates Forward (+)

23738923 .. 23742273

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G223500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCTTAATTACACTTGCAGTTGTTTTTTTTCCTTGTTTTACTTCCTCTTTTCAGGGTTTCTCTATAATTTGGACGGCGGGGATCAAACTAAAGCAAGTTTTGTGCTTCACTTTTGCCTGATTTCCAGGCTTCCCTCAGAGGCTGAGGACTGCATACGTAAAACTAGAGGATATCTCTTGATAAAGTTTGAAACTTGTGACTTGGGCAATATGGAGAATGGATCAAGGGGCAAGTTGAAGGATCCAGGGGTCTCTATGATGAAGTCATCTTCGAGTGCTGCATCTTTGAAAAGACCGCGAAGAACCAATAATGGAGCCCAAATTGCATCATGCTTGGTTGATGGGTGCAGTTCAGACCTTAGTGAATGCAGGGATTATCATCGACGCCATAAAGTATGTGAGCTCCATTCAAAGACCTCAAAAGTTACAATCAAGGGCCAGGAACAGCGGTTCTGCCAGCAATGCAGCAGGTTCCATTCATTGGAGGAGTTTGATGAAGGAAAAAGAAGCTGCAGAAGACGTCTTGCTGGACACAACAAACGCCGAAGGAAGCCTCAATTAGAACCCATGTCCTCAAATTTGGGAAGATTCCTTTCCAGTTACCAAGGCCCAAGATTCTTACAATTTGGTAGTCCACAAGTGTGTCCAACAAATGCTGTAATGAACTCTGCATGGGGTGGGGCTATGAAAGCAGAGAATGATGATGTGATTCTTCATAGCCACTCACAGTTAAGTGAGACGAGAAGAAACTTATTTCCGGGATCTTTGTCGTGTGAACAGAGCATTGAGTCCATGCTCTCTCAAGCTTCTGCCTGCCAACAACTTGTTGGTACCAACTTTGCATTGGGAAATTCAGGCAACAGCCACAAGATGTTCGCCAATGGATTATACTGCGACGTTGAATCCAATCGTGCTCTCTCTCTTCTGTCATCGACACCAGCATCCCGGGGGGAGATTGGTTTGAGCCACGCAGGGCAGTCCAGTTCAATCTGGCCACCTCAGCCCCTGATCCCTAGACTGCGGTACAATGTTTTGGGAATGGAGGATGACGCTGCCATTTCCAATTTGGTTGCTGATGGCAGCAGCAATGCCAATAATATGCATTTCCAGGGCATGTTTCAGATTATATCTGATGGCTCAACTGCTGGTGCACCTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

387

Amino Acids

42.61

Weight (kDa)

8.83

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23520 FvH4_4g23520 FvH4_4g23520 FvH4_4g23520
malus_domestica	MD16G1122000.v1.1
prunus_persica	Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1
pyrus_communis	pycom16g10430
rosa_chinensis	RchiOBHm_Chr4g0429911
rosa_laevigata	RLG00000007022
rosa_multiflora	Rmu_sc0002225.1_g000015
rosa_roxburghii	Rroxscaffold_5G00371740
rosa_rugosa	Rorug04G0238900 Rorug04G0239000 Rorug04G0239100
rosa_samantha	Rh4AG295600 Rh4BG302100 Rh4CG317700 Rh4DG299300
rosa_wichuraiana	Rw4G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	459
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	830
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccII	CGCG	1 cut(s)	298
AciI	CCGC	4 cut(s)	78, 296, 448, 1021
AclWI	GGATC	6 cut(s)	90, 229, 236, 249, 769, 1003
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	2 cut(s)	577, 850
AcyI	GRCGYC	2 cut(s)	385, 520
AfaI	GTAC	2 cut(s)	832, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	6 cut(s)	191, 238, 289, 411, 902, 987
AjnI	CCWGG	4 cut(s)	125, 244, 438, 1107
AleI	CACNNNNGTG	1 cut(s)	640
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	3 cut(s)	403, 510, 806
AluI	AGCT	3 cut(s)	403, 510, 806
Alw21I	GWGCWC	3 cut(s)	405, 916, 1153
Alw26I	GTCTC	2 cut(s)	256, 731
Alw44I	GTGCAC	1 cut(s)	1149
AlwI	GGATC	6 cut(s)	90, 229, 236, 249, 769, 1003
AlwNI	CAGNNNCTG	2 cut(s)	143, 1006
Ama87I	CYCGRG	1 cut(s)	945
AoxI	GGCC	3 cut(s)	436, 607, 992
ApaLI	GTGCAC	1 cut(s)	1149
ApeKI	GCWGC	6 cut(s)	278, 465, 510, 1052, 1080, 1083
ApoI	RAATTY	2 cut(s)	577, 850
Asp718I	GGTACC	1 cut(s)	830
AspS9I	GGNCC	2 cut(s)	436, 608
AsuC2I	CCSGG	3 cut(s)	759, 946, 947
AvaI	CYCGRG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	1153
BalI	TGGCCA	1 cut(s)	994
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	830
BanII	GRGCYC	2 cut(s)	319, 405
BbsI	GAAGAC	1 cut(s)	523
Bbv12I	GWGCWC	3 cut(s)	405, 916, 1153
BbvCI	CCTCAGC	2 cut(s)	144, 999
BbvI	GCAGC	6 cut(s)	265, 477, 497, 1039, 1092, 1095
BccI	CCATC	3 cut(s)	335, 1070, 1127
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	4 cut(s)	127, 246, 440, 1109
BcnI	CCSGG	3 cut(s)	759, 946, 947
BcoDI	GTCTC	2 cut(s)	256, 731
BfaI	CTAG	3 cut(s)	165, 1014, 1159
BfmI	CTRYAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	6 cut(s)	279, 466, 511, 1053, 1081, 1084
BlsI	GCNGC	6 cut(s)	280, 467, 512, 1054, 1082, 1085
Bme1390I	CCNGG	7 cut(s)	127, 246, 440, 759, 946, 947, 1109
BmeT110I	CYCGRG	1 cut(s)	945
BmgT120I	GGNCC	2 cut(s)	436, 608
BmiI	GGNNCC	4 cut(s)	243, 316, 473, 832
BmrFI	CCNGG	7 cut(s)	127, 246, 440, 759, 946, 947, 1109
BmsI	GCATC	3 cut(s)	290, 335, 950
BpiI	GAAGAC	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	2 cut(s)	144, 999
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	3 cut(s)	759, 946, 947
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	378
BsaHI	GRCGYC	2 cut(s)	385, 520
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	5 cut(s)	245, 604, 945, 946, 1108
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	597, 981
Bse3DI	GCAATG	2 cut(s)	467, 1093
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	4 cut(s)	127, 246, 440, 1109
BseDI	CCNNGG	5 cut(s)	245, 604, 945, 946, 1108
BseGI	GGATG	2 cut(s)	941, 1051
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	2 cut(s)	467, 1093
BseMII	CTCAG	3 cut(s)	135, 150, 1013
BseNI	ACTGG	2 cut(s)	597, 981
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	1153
BseXI	GCAGC	6 cut(s)	265, 477, 497, 1039, 1092, 1095
BsgI	GTGCAG	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	3 cut(s)	438, 609, 994
BshNI	GGYRCC	1 cut(s)	830
BsiHKAI	GWGCWC	3 cut(s)	405, 916, 1153
BsiHKCI	CYCGRG	1 cut(s)	945
BsiSI	CCGG	2 cut(s)	758, 946
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	256, 731
BsmBI	CGTCTC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	438, 609, 994
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	945
Bsp1286I	GDGCHC	4 cut(s)	319, 405, 916, 1153
Bsp143I	GATC	5 cut(s)	82, 221, 241, 761, 1008
BspACI	CCGC	4 cut(s)	78, 296, 448, 1021
BspANI	GGCC	3 cut(s)	438, 609, 994
BspCNI	CTCAG	3 cut(s)	136, 149, 1012
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	243, 316, 473, 832
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	6 cut(s)	90, 229, 236, 249, 769, 1003
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	467, 1093
BsrI	ACTGG	2 cut(s)	597, 981
BssECI	CCNNGG	5 cut(s)	245, 604, 945, 946, 1108
BssMI	GATC	5 cut(s)	82, 221, 241, 761, 1008
BssNI	GRCGYC	2 cut(s)	385, 520
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	4 cut(s)	127, 246, 440, 1109
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	1 cut(s)	927
BstACI	GRCGYC	2 cut(s)	385, 520
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	458, 814
BstDEI	CTNAG	4 cut(s)	136, 144, 359, 999
BstF5I	GGATG	2 cut(s)	941, 1051
BstFNI	CGCG	1 cut(s)	298
BstKTI	GATC	5 cut(s)	85, 224, 244, 764, 1011
BstMAI	GTCTC	2 cut(s)	256, 731
BstMBI	GATC	5 cut(s)	82, 221, 241, 761, 1008
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 462, 689, 1000
BstNI	CCWGG	4 cut(s)	127, 246, 440, 1109
BstNSI	RCATGY	1 cut(s)	1117
BstSCI	CCNGG	7 cut(s)	125, 244, 438, 757, 944, 945, 1107
BstSFI	CTRYAG	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	1153
BstSNI	TACGTA	1 cut(s)	158
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	6 cut(s)	265, 477, 497, 1039, 1092, 1095
BstV2I	GAAGAC	1 cut(s)	523
BstX2I	RGATCY	2 cut(s)	241, 761
BstYI	RGATCY	2 cut(s)	241, 761
BsuRI	GGCC	3 cut(s)	438, 609, 994
BtsCI	GGATG	2 cut(s)	941, 1051
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	458, 814
CaiI	CAGNNNCTG	2 cut(s)	143, 1006
Cfr13I	GGNCC	2 cut(s)	436, 608
Cfr9I	CCCGGG	1 cut(s)	945
CseI	GACGC	2 cut(s)	393, 1058
Csp6I	GTAC	2 cut(s)	831, 1024
CviAII	CATG	5 cut(s)	330, 568, 672, 793, 1114
CviQI	GTAC	2 cut(s)	831, 1024
DdeI	CTNAG	4 cut(s)	136, 144, 359, 999
DpnI	GATC	5 cut(s)	84, 223, 243, 763, 1010
DpnII	GATC	5 cut(s)	82, 221, 241, 761, 1008
EaeI	YGGCCR	1 cut(s)	992
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
Ecl136II	GAGCTC	1 cut(s)	403
Eco105I	TACGTA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	319, 405
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	4 cut(s)	125, 244, 438, 1107
EcoRV	GATATC	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	1104
EcoT38I	GRGCYC	2 cut(s)	319, 405
ErhI	CCWWGG	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	731
FaeI	CATG	5 cut(s)	333, 571, 675, 796, 1117
FatI	CATG	5 cut(s)	329, 567, 671, 792, 1113
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	279, 466, 511, 1053, 1081, 1084
FokI	GGATG	2 cut(s)	928, 1058
FriOI	GRGCYC	2 cut(s)	319, 405
Fsp4HI	GCNGC	6 cut(s)	279, 466, 511, 1053, 1081, 1084
FspBI	CTAG	3 cut(s)	165, 1014, 1159
GluI	GCNGC	6 cut(s)	279, 466, 511, 1053, 1081, 1084
HaeIII	GGCC	3 cut(s)	438, 609, 994
HapII	CCGG	2 cut(s)	758, 946
HgaI	GACGC	2 cut(s)	393, 1058
Hin1I	GRCGYC	2 cut(s)	385, 520
Hin1II	CATG	5 cut(s)	333, 571, 675, 796, 1117
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	5 cut(s)	588, 615, 709, 788, 902
HpaII	CCGG	2 cut(s)	758, 946
Hpy166II	GTNNAC	3 cut(s)	635, 776, 1151
Hpy188I	TCNGA	4 cut(s)	139, 355, 1122, 1132
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	3 cut(s)	635, 776, 1151
Hpy99I	CGWCG	2 cut(s)	387, 899
HpyAV	CCTTC	3 cut(s)	232, 491, 540
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	3 cut(s)	157, 520, 897
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 462, 689, 1000
HpyF3I	CTNAG	4 cut(s)	136, 144, 359, 999
HpySE526I	ACGT	3 cut(s)	157, 520, 897
Hsp92I	GRCGYC	2 cut(s)	385, 520
Hsp92II	CATG	5 cut(s)	333, 571, 675, 796, 1117
KpnI	GGTACC	1 cut(s)	834
Kzo9I	GATC	5 cut(s)	82, 221, 241, 761, 1008
LmnI	GCTCC	2 cut(s)	314, 408
Lsp1109I	GCAGC	6 cut(s)	265, 477, 497, 1039, 1092, 1095
LweI	GCATC	3 cut(s)	290, 335, 950
MaeI	CTAG	3 cut(s)	165, 1014, 1159
MaeII	ACGT	3 cut(s)	157, 520, 897
MaeIII	GTNAC	3 cut(s)	197, 424, 599
MalI	GATC	5 cut(s)	84, 223, 243, 763, 1010
MboI	GATC	5 cut(s)	82, 221, 241, 761, 1008
MboII	GAAGA	7 cut(s)	261, 312, 528, 597, 704, 756, 914
MflI	RGATCY	2 cut(s)	241, 761
MhlI	GDGCHC	4 cut(s)	319, 405, 916, 1153
MlsI	TGGCCA	1 cut(s)	994
MluCI	AATT	8 cut(s)	7, 67, 321, 557, 577, 623, 850, 1063
MluNI	TGGCCA	1 cut(s)	994
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	994
Mph1103I	ATGCAT	1 cut(s)	1104
MscI	TGGCCA	1 cut(s)	994
MseI	TTAA	2 cut(s)	6, 731
MslI	CAYNNNNRTG	1 cut(s)	640
Msp20I	TGGCCA	1 cut(s)	994
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	2 cut(s)	758, 946
MspR9I	CCNGG	7 cut(s)	127, 246, 440, 759, 946, 947, 1109
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	4 cut(s)	127, 246, 440, 1109
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	4 cut(s)	323, 462, 689, 1000
NciI	CCSGG	3 cut(s)	759, 946, 947
NdeII	GATC	5 cut(s)	82, 221, 241, 761, 1008
NlaIII	CATG	5 cut(s)	333, 571, 675, 796, 1117
NlaIV	GGNNCC	4 cut(s)	243, 316, 473, 832
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	1104
NspI	RCATGY	1 cut(s)	1117
OliI	CACNNNNGTG	1 cut(s)	640
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	4 cut(s)	588, 615, 709, 902
PflMI	CCANNNNNTGG	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	6 cut(s)	280, 467, 512, 1054, 1082, 1085
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	4 cut(s)	125, 244, 438, 1107
PspGI	CCWGG	4 cut(s)	125, 244, 438, 1107
PspN4I	GGNNCC	4 cut(s)	243, 316, 473, 832
PspPI	GGNCC	2 cut(s)	436, 608
PstI	CTGCAG	1 cut(s)	515
PstNI	CAGNNNCTG	2 cut(s)	143, 1006
PsuI	RGATCY	2 cut(s)	241, 761
RsaI	GTAC	2 cut(s)	832, 1025
RsaNI	GTAC	2 cut(s)	831, 1024
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	6, 731
SatI	GCNGC	6 cut(s)	279, 466, 511, 1053, 1081, 1084
Sau3AI	GATC	5 cut(s)	82, 221, 241, 761, 1008
Sau96I	GGNCC	2 cut(s)	436, 608
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	7 cut(s)	127, 246, 440, 759, 946, 947, 1109
SduI	GDGCHC	4 cut(s)	319, 405, 916, 1153
SfaNI	GCATC	3 cut(s)	290, 335, 950
SfcI	CTRYAG	1 cut(s)	511
SmaI	CCCGGG	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	8 cut(s)	7, 67, 321, 557, 577, 623, 850, 1063
SsiI	CCGC	4 cut(s)	78, 296, 448, 1021
SspMI	CTAG	3 cut(s)	165, 1014, 1159
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	7 cut(s)	125, 244, 438, 757, 944, 945, 1107
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	3 cut(s)	160, 523, 900
TaqI	TCGA	3 cut(s)	272, 382, 932
TasI	AATT	8 cut(s)	7, 67, 321, 557, 577, 623, 850, 1063
TfiI	GAWTC	4 cut(s)	588, 615, 709, 902
Tru1I	TTAA	2 cut(s)	6, 731
Tru9I	TTAA	2 cut(s)	6, 731
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	6 cut(s)	278, 465, 510, 1052, 1080, 1083
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	6 cut(s)	275, 468, 510, 677, 701, 704
TspMI	CCCGGG	1 cut(s)	945
Van91I	CCANNNNNTGG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	1149
XapI	RAATTY	2 cut(s)	577, 850
XceI	RCATGY	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	3 cut(s)	824, 841, 1063
XmaI	CCCGGG	1 cut(s)	945
XspI	CTAG	3 cut(s)	165, 1014, 1159
ZraI	GACGTC	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.