Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002225.1

Orthogroup ID

OG0008130

Physical Location & Seq

Genomic Coordinates Forward (+)

82970 .. 84185

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002225.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgaacaacggttcaaaaggcaagttgaaggggtgtggggtctctgtgatgaacacatcttcaaagagaggccgacgagccaatgctgtaatccaagttgcttcatgcttggttgatgggtgcaattccgaccttagcatgtgcagggagtatcaccagcgccacaaagtatgtgagctccattcaaagaccccaaaggtcacgattcagggacaggaaaagcgattctgtcagcagtgcagcaggttccattcattggaagagtttgatgaaggaaaaagaagctgcagaaggcgtcttgctggacacaacaaacgccgaaggaagcctcagttggaacctatgcccacaagtttaggagcatttctttctgattaccaaggcgcaacattttcagcattcagtactccacaactctatccaacaaatgctgtaatgaactctgcttgggaagattttcctactcacagccactcccaattaagcgtgtcaagaagaaactcattttcagaatctttaccatgctatagccacagagtaggcattggcttcatgcactctgaagctgcttcatctgtttgccaaccacttcttggtaccaactttgcattgggaaattatggcaacaaccacaaaattttctccaatgagttcttcagtggcaacgttgaatcaagttgcgctcgctctcttctgtcattgacaccagcagtcccggaggagactggtttgagcctcataggacagacaagttcaatctgctcagctcagtccgtcgtccctagacttcaccactacaatgatttgggaatgcagggtggagcagtagtttctaatctagttactgatggaagcaacaattccaatctcctttgcattcagcagatgtttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

298

Amino Acids

32.77

Weight (kDa)

9.08

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23520 FvH4_4g23520 FvH4_4g23520 FvH4_4g23520
malus_domestica	MD16G1122000.v1.1
prunus_persica	Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1 Prupe.1G223500_v2.0.a1
pyrus_communis	pycom16g10430
rosa_chinensis	RchiOBHm_Chr4g0429911
rosa_laevigata	RLG00000007022
rosa_multiflora	Rmu_sc0002225.1_g000015
rosa_roxburghii	Rroxscaffold_5G00371740
rosa_rugosa	Rorug04G0238900 Rorug04G0239000 Rorug04G0239100
rosa_samantha	Rh4AG295600 Rh4BG302100 Rh4CG317700 Rh4DG299300
rosa_wichuraiana	Rw4G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	596
AccB7I	CCANNNNNTGG	2 cut(s)	256, 593
AclI	AACGTT	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	636
AcuI	CTGAAG	2 cut(s)	582, 640
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	406, 598
AfiI	CCNNNNNNNGG	2 cut(s)	256, 593
AgsI	TTSAA	6 cut(s)	15, 28, 63, 186, 671, 756
AjuI	GAANNNNNNNTTGG	4 cut(s)	317, 349, 638, 670
AluBI	AGCT	4 cut(s)	178, 285, 566, 767
AluI	AGCT	4 cut(s)	178, 285, 566, 767
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	46, 716
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	240, 285, 566
ApoI	RAATTY	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	456
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	3 cut(s)	162, 386, 683
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	146, 782
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	252, 272, 553
BccI	CCATC	2 cut(s)	110, 842
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	46, 716
BfaI	CTAG	3 cut(s)	783, 839, 895
BfmI	CTRYAG	2 cut(s)	286, 526
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	241, 286, 567
BlpI	GCTNAGC	1 cut(s)	763
BlsI	GCNGC	3 cut(s)	242, 287, 568
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	716
BmiI	GGNNCC	3 cut(s)	248, 339, 598
BmrFI	CCNGG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 593
Bse1I	ACTGG	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	256, 593
BseMII	CTCAG	3 cut(s)	344, 777, 782
BseNI	ACTGG	1 cut(s)	730
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	252, 272, 553
BsgI	GTGCAG	2 cut(s)	163, 259
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	3 cut(s)	225, 698, 764
BslI	CCNNNNNNNGG	2 cut(s)	256, 593
BsmAI	GTCTC	2 cut(s)	46, 716
BsmFI	GGGAC	3 cut(s)	225, 698, 764
BsmI	GAATGC	3 cut(s)	398, 816, 876
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	763
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	3 cut(s)	343, 776, 781
BspLI	GGNNCC	3 cut(s)	248, 339, 598
BspMAI	CTGCAG	1 cut(s)	290
BspMI	ACCTGC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	730
BssECI	CCNNGG	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	255, 696
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	4 cut(s)	134, 330, 763, 768
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	3 cut(s)	162, 386, 683
BstMAI	GTCTC	2 cut(s)	46, 716
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	2 cut(s)	286, 526
BstV1I	GCAGC	3 cut(s)	252, 272, 553
BsuRI	GGCC	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 664
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	685
CfoI	GCGC	3 cut(s)	162, 386, 683
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	405, 597
CviAII	CATG	4 cut(s)	105, 139, 522, 553
CviQI	GTAC	2 cut(s)	405, 597
DdeI	CTNAG	4 cut(s)	134, 330, 763, 768
Eam1104I	CTCTTC	2 cut(s)	255, 696
EarI	CTCTTC	2 cut(s)	255, 696
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	582, 640
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	4 cut(s)	108, 142, 525, 556
FaiI	YATR	9 cut(s)	106, 140, 172, 344, 523, 528, 554, 621, 740
FaqI	GGGAC	3 cut(s)	225, 698, 764
FatI	CATG	4 cut(s)	104, 138, 521, 552
Fnu4HI	GCNGC	3 cut(s)	241, 286, 567
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	241, 286, 567
FspBI	CTAG	3 cut(s)	783, 839, 895
GlaI	GCGC	3 cut(s)	161, 385, 682
GluI	GCNGC	3 cut(s)	241, 286, 567
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	3 cut(s)	162, 386, 683
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	108, 142, 525, 556
Hin6I	GCGC	3 cut(s)	160, 384, 681
HinP1I	GCGC	3 cut(s)	160, 384, 681
HinfI	GANTC	4 cut(s)	205, 225, 512, 671
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	2 cut(s)	146, 782
Hpy188I	TCNGA	4 cut(s)	130, 373, 511, 562
Hpy188III	TCNNGA	2 cut(s)	202, 492
Hpy99I	CGWCG	2 cut(s)	78, 779
HpyAV	CCTTC	4 cut(s)	22, 266, 285, 315
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	8 cut(s)	123, 144, 240, 288, 556, 608, 814, 876
HpyF3I	CTNAG	4 cut(s)	134, 330, 763, 768
HpySE526I	ACGT	1 cut(s)	666
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	4 cut(s)	108, 142, 525, 556
HspAI	GCGC	3 cut(s)	160, 384, 681
KpnI	GGTACC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	183, 359, 821
Lsp1109I	GCAGC	3 cut(s)	252, 272, 553
MaeI	CTAG	3 cut(s)	783, 839, 895
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	199, 841
MboII	GAAGA	6 cut(s)	51, 272, 464, 507, 646, 683
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	5 cut(s)	124, 479, 616, 636, 859
MmeI	TCCRAC	3 cut(s)	153, 315, 446
MnlI	CCTC	4 cut(s)	62, 339, 712, 746
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	798
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	3 cut(s)	398, 816, 876
NciI	CCSGG	1 cut(s)	716
NlaIII	CATG	4 cut(s)	108, 142, 525, 556
NlaIV	GGNNCC	3 cut(s)	248, 339, 598
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	142
PctI	GAATGC	3 cut(s)	398, 816, 876
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	205, 225, 512, 671
PflMI	CCANNNNNTGG	2 cut(s)	256, 593
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	3 cut(s)	242, 287, 568
Psp124BI	GAGCTC	1 cut(s)	180
Psp1406I	AACGTT	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	248, 339, 598
PstI	CTGCAG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	406, 598
RsaNI	GTAC	2 cut(s)	405, 597
RseI	CAYNNNNRTG	1 cut(s)	798
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	241, 286, 567
ScaI	AGTACT	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	135, 180, 201, 248, 287, 343, 568, 669, 769
SfcI	CTRYAG	2 cut(s)	286, 526
SmiMI	CAYNNNNRTG	1 cut(s)	798
Sse9I	AATT	5 cut(s)	124, 479, 616, 636, 859
SspMI	CTAG	3 cut(s)	783, 839, 895
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	669
TasI	AATT	5 cut(s)	124, 479, 616, 636, 859
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	4 cut(s)	205, 225, 512, 671
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	2 cut(s)	242, 664
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	240, 285, 566
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	8 cut(s)	17, 65, 93, 243, 285, 452, 541, 561
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	2 cut(s)	242, 664
Van91I	CCANNNNNTGG	2 cut(s)	256, 593
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	2 cut(s)	590, 607
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	3 cut(s)	783, 839, 895
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.