Rh4AG295600

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008130
Physical Location & Seq
Forward (+)
60925632 .. 60928178
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG295600.1

Sequence Viewer

Length: 897 bp
ATGAACAACGGTTCAAAAGGCAAGTTGAAGGGGCATGGGGTCTCTATGATGAACACATCTTCAAAGAGAGGCCGACGAGCCAATGCTGTAATCCAAGTTGCTTCATGCTTGGTTGATGGGTGCAATTCCGACCTTAGCATGTGCAGGGAGTATCACCAGCGCCACAAAGTATGTGAGCTCCATTCAAAGACCCCAAAGGTCATGATTCAGGGACAGGAAAAGCGATTCTGTCAGCAGTGCAGCAGGTTCCATTCATTGGAAGAGTTTGATGAAGGAAAAAGAAGCTGCAGAAGGCGTCTTGCTGGACACAACAAACGCCGAAGGAAGCCTCAGTTGGAACCTATGCCCACAAGTTTAGGAGCATTTCTTTCTGATTACCAAGGCGCAACATTTTCAGCATTCAGTACTCCACAACTTTATCCAACAAATGCTGTAATGTACTCTGCTTGGGAAGATTTTCCTACTCACAGCCACTCCCAATTAAGTGTGTCAAGAAGAAACTCATTTTCAGAATCTTTACCATGCTATAGCCACAGAGTAGGCATTGGCTCCATGCACCCCGAAGCTGCTTCTTCTGTTTGCCAACCGCTTCTTGGTACCAACTTTGCATTGGGAAATTATGGCAACAACCACAAAATTTTCTCCAATGAGTTCTTCAGTGCCAACGTTGAATCAAGTTGCGCTCGCTCTCTTCTGTCATTGACACCAGCAGTCCCGGAGGAGACTGGTTTGAGCCTCATAGGACAGACAAGTTCAATCTGCTCAGCTCAATCCTTCGTCCCTAGACTTCACCACTACAATGATTTGGGAATGGAGGATGGAGCAGTAGTTTCTAATCTAGTTACTGATGGAAGCAACAATTCCAATCTCCTTTGCATTCAGCAGATGTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

298

Amino Acids

32.99

Weight (kDa)

8.93

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 36 - 109 9.2e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 256
AciI CCGC 1 cut(s) 587
AclI AACGTT 1 cut(s) 666
AcsI RAATTY 1 cut(s) 636
AcuI CTGAAG 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 3 cut(s) 406, 440, 598
AfiI CCNNNNNNNGG 2 cut(s) 256, 593
AgsI TTSAA 6 cut(s) 15, 28, 63, 186, 671, 756
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 349, 638, 670
AluBI AGCT 4 cut(s) 178, 285, 566, 767
AluI AGCT 4 cut(s) 178, 285, 566, 767
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 46, 716
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 240, 285, 566
ApoI RAATTY 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 456
Asp718I GGTACC 1 cut(s) 596
AspLEI GCGC 3 cut(s) 162, 386, 683
AsuC2I CCSGG 1 cut(s) 716
AsuHPI GGTGA 2 cut(s) 146, 782
BanI GGYRCC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 252, 272, 553
BccI CCATC 3 cut(s) 110, 812, 842
BcnI CCSGG 1 cut(s) 716
BcoDI GTCTC 2 cut(s) 46, 716
BfaI CTAG 3 cut(s) 783, 839, 895
BfmI CTRYAG 2 cut(s) 286, 526
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 234
BisI GCNGC 3 cut(s) 241, 286, 567
BlpI GCTNAGC 1 cut(s) 763
BlsI GCNGC 3 cut(s) 242, 287, 568
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 716
BmiI GGNNCC 4 cut(s) 248, 339, 550, 598
BmrFI CCNGG 1 cut(s) 716
Bpu10I CCTNAGC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 763
BpuMI CCSGG 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 813, 843
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 593
Bse1I ACTGG 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 2 cut(s) 256, 593
BseMII CTCAG 2 cut(s) 344, 777
BseNI ACTGG 1 cut(s) 730
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 3 cut(s) 252, 272, 553
BsgI GTGCAG 2 cut(s) 163, 259
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 716
BslFI GGGAC 3 cut(s) 225, 698, 764
BslI CCNNNNNNNGG 2 cut(s) 256, 593
BsmAI GTCTC 2 cut(s) 46, 716
BsmFI GGGAC 3 cut(s) 225, 698, 764
BsmI GAATGC 2 cut(s) 398, 876
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 763
BspACI CCGC 1 cut(s) 587
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 343, 776
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 248, 339, 550, 598
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 379
BssNI GRCGYC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 255, 696
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 3 cut(s) 134, 330, 763
BstF5I GGATG 1 cut(s) 823
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 3 cut(s) 162, 386, 683
BstMAI GTCTC 2 cut(s) 46, 716
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 714
BstSFI CTRYAG 2 cut(s) 286, 526
BstV1I GCAGC 3 cut(s) 252, 272, 553
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 823
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 242, 664
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 685
CciI TCATGA 1 cut(s) 201
CfoI GCGC 3 cut(s) 162, 386, 683
CseI GACGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 405, 439, 597
CviAII CATG 6 cut(s) 35, 105, 139, 202, 522, 553
CviQI GTAC 3 cut(s) 405, 439, 597
DdeI CTNAG 3 cut(s) 134, 330, 763
Eam1104I CTCTTC 2 cut(s) 255, 696
EarI CTCTTC 2 cut(s) 255, 696
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 6 cut(s) 38, 108, 142, 205, 525, 556
FaqI GGGAC 3 cut(s) 225, 698, 764
FatI CATG 6 cut(s) 34, 104, 138, 201, 521, 552
Fnu4HI GCNGC 3 cut(s) 241, 286, 567
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 241, 286, 567
FspBI CTAG 3 cut(s) 783, 839, 895
GlaI GCGC 3 cut(s) 161, 385, 682
GluI GCNGC 3 cut(s) 241, 286, 567
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 716
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 162, 386, 683
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 6 cut(s) 38, 108, 142, 205, 525, 556
Hin6I GCGC 3 cut(s) 160, 384, 681
HinP1I GCGC 3 cut(s) 160, 384, 681
HinfI GANTC 4 cut(s) 205, 225, 512, 671
HpaII CCGG 1 cut(s) 716
HphI GGTGA 2 cut(s) 146, 782
Hpy188I TCNGA 3 cut(s) 130, 373, 511
Hpy188III TCNNGA 2 cut(s) 202, 492
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 5 cut(s) 22, 266, 285, 315, 784
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 7 cut(s) 123, 144, 240, 288, 556, 608, 876
HpyF3I CTNAG 3 cut(s) 134, 330, 763
HpySE526I ACGT 1 cut(s) 666
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 6 cut(s) 38, 108, 142, 205, 525, 556
HspAI GCGC 3 cut(s) 160, 384, 681
KpnI GGTACC 1 cut(s) 600
LmnI GCTCC 4 cut(s) 183, 359, 554, 821
LpnPI CCDG 9 cut(s) 130, 170, 194, 200, 229, 288, 711, 720, 729
Lsp1109I GCAGC 3 cut(s) 252, 272, 553
MaeI CTAG 3 cut(s) 783, 839, 895
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 1 cut(s) 841
MboII GAAGA 7 cut(s) 51, 272, 464, 507, 564, 646, 683
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 5 cut(s) 124, 479, 616, 636, 859
MmeI TCCRAC 3 cut(s) 153, 315, 446
MnlI CCTC 5 cut(s) 62, 339, 712, 746, 808
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 798
MspI CCGG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 716
Mva1269I GAATGC 2 cut(s) 398, 876
NciI CCSGG 1 cut(s) 716
NlaIII CATG 6 cut(s) 38, 108, 142, 205, 525, 556
NlaIV GGNNCC 4 cut(s) 248, 339, 550, 598
NspI RCATGY 1 cut(s) 142
PagI TCATGA 1 cut(s) 201
PctI GAATGC 2 cut(s) 398, 876
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 4 cut(s) 205, 225, 512, 671
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 714
PkrI GCNGC 3 cut(s) 242, 287, 568
Psp124BI GAGCTC 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 666
PspN4I GGNNCC 4 cut(s) 248, 339, 550, 598
PstI CTGCAG 1 cut(s) 290
RsaI GTAC 3 cut(s) 406, 440, 598
RsaNI GTAC 3 cut(s) 405, 439, 597
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 3 cut(s) 241, 286, 567
ScaI AGTACT 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 716
SduI GDGCHC 1 cut(s) 180
SetI ASST 9 cut(s) 135, 180, 201, 248, 287, 343, 568, 669, 769
SfcI CTRYAG 2 cut(s) 286, 526
SmiMI CAYNNNNRTG 1 cut(s) 798
Sse9I AATT 5 cut(s) 124, 479, 616, 636, 859
SsiI CCGC 1 cut(s) 587
SspMI CTAG 3 cut(s) 783, 839, 895
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 714
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 669
TasI AATT 5 cut(s) 124, 479, 616, 636, 859
TatI WGTACW 2 cut(s) 404, 438
TfiI GAWTC 4 cut(s) 205, 225, 512, 671
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 2 cut(s) 242, 664
TseI GCWGC 3 cut(s) 240, 285, 566
TspDTI ATGAA 5 cut(s) 17, 65, 93, 243, 285
TspRI CASTG 2 cut(s) 242, 664
Van91I CCANNNNNTGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 2 cut(s) 590, 607
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 783, 839, 895
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.