Rorug04G0239000

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008130
Physical Location & Seq
Reverse (-)
40637215 .. 40638779
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0239000.1

Sequence Viewer

Length: 1260 bp
ATGGATTTCTTCAAGTCCGTCTTCTCCGACGATCCCGATCCCTCCGACGACGACTCTAACTCACTCACCCAAAACGACGCCGTCGCCGCCAGCCACGACCCGGAGCAAAGTCCGCAACCGGACTCCGGTACCGGCGCGTGGAGCTTCGGGGGTCTGATGACGACGCTGGCGACGAGGTCCGAGTCGGTGCTGCAGACCTACCGCCGCGATCTCGCGGAGCTCGGGTCGGGGCTGAAGAAGGAGACGGCGGTGATCCGGGAGGTGGCGTCACGCGCCGTGAAGGAGCTCCCTGCTAAGCTGGATGTCGGCGCGTCGGTGGCGCAGGTGTCGCTGGAGTCGGTCGGGCAGGCGATCGACGACATCGGAAGCAGCGTGTGGAAGTCGACGGCGGAGATCATCTCTCACGGTAGGGAAGCTATGGCTGATGATATTGAATCTGATAATAATTCTGAAAATAATGCTAGTGAGAGGAGATTGAGTAGCAGTGGTAGATATAGTAGGTTTGAAGCTCAGGTTAAGGCAATTCAGAGTAATATGAATACTTACTTGGAGGAACCGGAGGATTTGGAGAGCTATGGAGAGTGGAAATTAGGGTTTGTGTTGGAGGAGAAAGCAGAGGAAATTGAGAATTTGATGAAGGAAAATGGAGTGATTGGTGAGATTCATGAGGAAATTGTGCCTGTTAAGGTTGACAATGGGAGTTTCTGGAGTAGGTACTTTTATAAGGTGCATAAGTTGAAGGAAGTGGAGGATGCTAGAGCTAAGCTTGTGAAGCGTGCGATTTCCGGTGAAGAAGAGGATTTGAGTTGGGATTTCGATGACGATGACGATGAGGACGAGGAGAAGAAGAAGAAGAAGGAAGAGGGTGATGGGTTGGAGTCGGAGGCTGGTCCTAGTGGGAGTGTGGAGTTGGAGAAGGGAAACCAGAGTTCTGATGATGCTGTGGGTGTTGAAAGTGTGCCGAGGCAGTCTGTCAGCAGTGACAAGTCGGAGGCGAAATCAGAGGGGAAGACGGATAGTGGCGATTCTTGCAAAGAGAGTGATATTTCGATTGTATCGAGCCAGCCGTCAATGCCAGGGGAAGAAGATCTAGGGTGGGATGAGATTGAAGATATTGGAAGCAGTGATGAGAAGAAAGGGGAGGCTGTTGGGAGCACAAGTAGAGTCGATTTGCATAAGAGGCTTAGTGCTGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGATGAAGATGATGCTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

419

Amino Acids

45.91

Weight (kDa)

4.25

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 195 - 251 3.2e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 383
AccII CGCG 5 cut(s) 137, 207, 215, 273, 311
AciI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
AclWI GGATC 3 cut(s) 26, 32, 247
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 2 cut(s) 78, 266
AfaI GTAC 2 cut(s) 130, 716
AfiI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
AgsI TTSAA 6 cut(s) 13, 434, 506, 739, 953, 1109
AjnI CCWGG 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
Alw21I GWGCWC 3 cut(s) 222, 288, 1157
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 26, 32, 247
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 190, 369, 1190
ApoI RAATTY 1 cut(s) 628
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 4 cut(s) 137, 275, 311, 322
AspS9I GGNCC 2 cut(s) 177, 890
AsuC2I CCSGG 2 cut(s) 101, 257
AsuHPI GGTGA 5 cut(s) 58, 262, 668, 800, 878
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 177, 890
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 222, 288
BbsI GAAGAC 2 cut(s) 13, 1016
Bbv12I GWGCWC 3 cut(s) 222, 288, 1157
BbvI GCAGC 3 cut(s) 177, 381, 1177
BccI CCATC 1 cut(s) 863
BceAI ACGGC 5 cut(s) 65, 260, 261, 402, 1051
BciT130I CCWGG 1 cut(s) 1077
BcnI CCSGG 2 cut(s) 101, 257
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 462, 756, 894, 1091
BfmI CTRYAG 2 cut(s) 191, 1191
BfuAI ACCTGC 1 cut(s) 313
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
BlpI GCTNAGC 2 cut(s) 294, 762
BlsI GCNGC 5 cut(s) 88, 192, 206, 371, 1192
Bme1390I CCNGG 3 cut(s) 101, 257, 1077
Bme18I GGWCC 2 cut(s) 177, 890
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 177, 890
BmiI GGNNCC 2 cut(s) 130, 555
BmrFI CCNGG 3 cut(s) 101, 257, 1077
BmsI GCATC 3 cut(s) 742, 928, 1234
BpiI GAAGAC 2 cut(s) 13, 1016
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 2 cut(s) 353, 727
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 2 cut(s) 294, 762
BpuMI CCSGG 2 cut(s) 101, 257
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 78, 266
BsaJI CCNNGG 2 cut(s) 962, 1076
BsaWI WCCGGW 4 cut(s) 118, 125, 556, 785
BsaXI ACNNNNNCTCC 8 cut(s) 209, 239, 251, 281, 463, 493, 1144, 1174
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
Bse118I RCCGGY 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 1 cut(s) 1077
BseDI CCNNGG 2 cut(s) 962, 1076
BseGI GGATG 3 cut(s) 307, 757, 1105
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BseMII CTCAG 1 cut(s) 524
BseRI GAGGAG 4 cut(s) 484, 620, 854, 1217
BseXI GCAGC 3 cut(s) 177, 381, 1177
BseYI CCCAGC 1 cut(s) 1215
Bsh1236I CGCG 5 cut(s) 137, 207, 215, 273, 311
Bsh1285I CGRYCG 2 cut(s) 342, 354
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 342, 354
BsiHKAI GWGCWC 3 cut(s) 222, 288, 1157
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 7 cut(s) 101, 119, 126, 132, 256, 557, 786
BslI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 222, 288, 1157
Bsp143I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
Bsp1720I GCTNAGC 2 cut(s) 294, 762
BspACI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 5 cut(s) 137, 207, 215, 273, 311
BspHI TCATGA 2 cut(s) 664, 1256
BspLI GGNNCC 2 cut(s) 130, 555
BspMAI CTGCAG 2 cut(s) 195, 1195
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 26, 32, 247
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 962, 1076
BssMI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
BssNI GRCGYC 2 cut(s) 78, 266
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 789, 855, 1194
BstACI GRCGYC 2 cut(s) 78, 266
BstC8I GCNNGC 5 cut(s) 91, 168, 348, 777, 1064
BstDEI CTNAG 4 cut(s) 294, 510, 762, 1184
BstF5I GGATG 3 cut(s) 307, 757, 1105
BstFNI CGCG 5 cut(s) 137, 207, 215, 273, 311
BstHHI GCGC 4 cut(s) 137, 275, 311, 322
BstKTI GATC 7 cut(s) 34, 40, 211, 255, 354, 396, 1090
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
BstMCI CGRYCG 2 cut(s) 342, 354
BstNI CCWGG 1 cut(s) 1077
BstSCI CCNGG 3 cut(s) 99, 255, 1075
BstSFI CTRYAG 2 cut(s) 191, 1191
BstUI CGCG 5 cut(s) 137, 207, 215, 273, 311
BstV1I GCAGC 3 cut(s) 177, 381, 1177
BstV2I GAAGAC 2 cut(s) 13, 1016
BstX2I RGATCY 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 1087
BtsCI GGATG 3 cut(s) 307, 757, 1105
BtsI GCAGTG 3 cut(s) 490, 985, 1129
BtsIMutI CAGTG 3 cut(s) 490, 985, 1129
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 91, 168, 348, 777, 1064
CciI TCATGA 2 cut(s) 664, 1256
CfoI GCGC 4 cut(s) 137, 275, 311, 322
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 177, 890
CseI GACGC 4 cut(s) 86, 172, 255, 300
Csp6I GTAC 2 cut(s) 129, 715
CviAII CATG 2 cut(s) 665, 1257
CviQI GTAC 2 cut(s) 129, 715
DdeI CTNAG 4 cut(s) 294, 510, 762, 1184
DpnI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1089
DpnII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
Eam1104I CTCTTC 3 cut(s) 789, 855, 1194
EarI CTCTTC 3 cut(s) 789, 855, 1194
EciI GGCGGA 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 220, 286
Eco24I GRGCYC 2 cut(s) 222, 288
Eco32I GATATC 1 cut(s) 1222
Eco47I GGWCC 2 cut(s) 177, 890
Eco53kI GAGCTC 2 cut(s) 220, 286
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 2 cut(s) 220, 286
EcoRII CCWGG 1 cut(s) 1075
EcoRV GATATC 1 cut(s) 1222
EcoT38I GRGCYC 2 cut(s) 222, 288
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 668, 1260
FaiI YATR 9 cut(s) 419, 495, 536, 576, 666, 723, 732, 1176, 1258
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 664, 1256
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
FokI GGATG 3 cut(s) 314, 764, 1112
FriOI GRGCYC 2 cut(s) 222, 288
Fsp4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
FspBI CTAG 4 cut(s) 462, 756, 894, 1091
GlaI GCGC 4 cut(s) 136, 274, 310, 321
GluI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
GsaI CCCAGC 1 cut(s) 1219
GsuI CTGGAG 2 cut(s) 353, 727
HapII CCGG 7 cut(s) 101, 119, 126, 132, 256, 557, 786
HgaI GACGC 4 cut(s) 86, 172, 255, 300
HhaI GCGC 4 cut(s) 137, 275, 311, 322
Hin1I GRCGYC 2 cut(s) 78, 266
Hin1II CATG 2 cut(s) 668, 1260
Hin6I GCGC 4 cut(s) 135, 273, 309, 320
HinP1I GCGC 4 cut(s) 135, 273, 309, 320
HincII GTYRAC 2 cut(s) 384, 691
HindII GTYRAC 2 cut(s) 384, 691
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 9 cut(s) 53, 122, 182, 335, 434, 661, 878, 1025, 1164
HpaII CCGG 7 cut(s) 101, 119, 126, 132, 256, 557, 786
HphI GGTGA 5 cut(s) 58, 262, 668, 800, 878
Hpy166II GTNNAC 2 cut(s) 384, 691
Hpy188III TCNNGA 4 cut(s) 35, 665, 706, 1257
Hpy8I GTNNAC 2 cut(s) 384, 691
HpyAV CCTTC 6 cut(s) 232, 274, 631, 733, 850, 910
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 5 cut(s) 193, 730, 1032, 1174, 1193
HpyF3I CTNAG 4 cut(s) 294, 510, 762, 1184
Hsp92I GRCGYC 2 cut(s) 78, 266
Hsp92II CATG 2 cut(s) 668, 1260
HspAI GCGC 4 cut(s) 135, 273, 309, 320
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
LmnI GCTCC 6 cut(s) 103, 141, 217, 283, 291, 1152
Lsp1109I GCAGC 3 cut(s) 177, 381, 1177
LweI GCATC 3 cut(s) 742, 928, 1234
MaeI CTAG 4 cut(s) 462, 756, 894, 1091
MaeIII GTNAC 2 cut(s) 267, 980
MalI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1089
MboI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
MflI RGATCY 1 cut(s) 1087
MhlI GDGCHC 3 cut(s) 222, 288, 1157
MluCI AATT 6 cut(s) 445, 522, 587, 621, 628, 672
MlyI GAGTC 6 cut(s) 47, 116, 191, 344, 887, 1173
MmeI TCCRAC 7 cut(s) 51, 69, 582, 855, 861, 891, 969
MseI TTAA 3 cut(s) 516, 684, 1251
MspI CCGG 7 cut(s) 101, 119, 126, 132, 256, 557, 786
MspR9I CCNGG 3 cut(s) 101, 257, 1077
MvaI CCWGG 1 cut(s) 1077
MvnI CGCG 5 cut(s) 137, 207, 215, 273, 311
NciI CCSGG 2 cut(s) 101, 257
NdeII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
NlaIII CATG 2 cut(s) 668, 1260
NlaIV GGNNCC 2 cut(s) 130, 555
NmeAIII GCCGAG 1 cut(s) 987
NmuCI GTSAC 2 cut(s) 267, 980
PagI TCATGA 2 cut(s) 664, 1256
PaqCI CACCTGC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 6 cut(s) 167, 170, 369, 834, 1055, 1064
PfeI GAWTC 3 cut(s) 434, 661, 1025
PflFI GACNNNGTC 2 cut(s) 80, 175
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 5 cut(s) 88, 192, 206, 371, 1192
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 6 cut(s) 47, 116, 190, 343, 886, 1172
PpsI GAGTC 6 cut(s) 47, 116, 190, 343, 886, 1172
PsiI TTATAA 1 cut(s) 723
Psp124BI GAGCTC 2 cut(s) 222, 288
Psp6I CCWGG 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 2 cut(s) 130, 555
PspPI GGNCC 2 cut(s) 177, 890
PstI CTGCAG 2 cut(s) 195, 1195
PsuI RGATCY 1 cut(s) 1087
PsyI GACNNNGTC 2 cut(s) 80, 175
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 2 cut(s) 130, 716
RsaNI GTAC 2 cut(s) 129, 715
SacI GAGCTC 2 cut(s) 222, 288
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 516, 684, 1251
SatI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
Sau3AI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1087
Sau96I GGNCC 2 cut(s) 177, 890
SchI GAGTC 6 cut(s) 47, 116, 191, 344, 887, 1173
ScrFI CCNGG 3 cut(s) 101, 257, 1077
SduI GDGCHC 3 cut(s) 222, 288, 1157
SfaNI GCATC 3 cut(s) 742, 928, 1234
SfcI CTRYAG 2 cut(s) 191, 1191
SinI GGWCC 2 cut(s) 177, 890
Sse9I AATT 6 cut(s) 445, 522, 587, 621, 628, 672
SsiI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
SspMI CTAG 4 cut(s) 462, 756, 894, 1091
SstI GAGCTC 2 cut(s) 222, 288
StyD4I CCNGG 3 cut(s) 99, 255, 1075
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 7 cut(s) 354, 383, 816, 1049, 1058, 1167, 1224
TaqII GACCGA 1 cut(s) 328
TasI AATT 6 cut(s) 445, 522, 587, 621, 628, 672
TauI GCSGC 2 cut(s) 89, 207
TfiI GAWTC 3 cut(s) 434, 661, 1025
Tru1I TTAA 3 cut(s) 516, 684, 1251
Tru9I TTAA 3 cut(s) 516, 684, 1251
TscAI CASTG 3 cut(s) 490, 985, 1129
TseFI GTSAC 2 cut(s) 267, 980
TseI GCWGC 3 cut(s) 190, 369, 1190
Tsp45I GTSAC 2 cut(s) 267, 980
TspDTI ATGAA 4 cut(s) 551, 650, 653, 1251
TspGWI ACGGA 2 cut(s) 7, 1028
TspRI CASTG 3 cut(s) 490, 985, 1129
Tth111I GACNNNGTC 2 cut(s) 80, 175
VpaK11BI GGWCC 2 cut(s) 177, 890
XapI RAATTY 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 462, 756, 894, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.