Prupe.1G262500_v2.0.a1

UPF0392 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014925
Physical Location & Seq
Forward (+)
27116290 .. 27118814
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G262500.1

Sequence Viewer

Length: 1866 bp
ATGTCAGGTATGGACTCATCAGAGCAACGCCGCAAGCGGAAGCGCATGCTTCGGTCCTACTCACAAGCAAAGCACTACTTGTCCCTGAGAAGGCCTCTCATTCTCTGCTTCTCCTTCTTCATCTTCCTCTTGCTCCTCTCCTTCGAACGCTTCCATCCGGCGTCGTTTCGGCCCGTCCTCACCGCCTCCACCACCACCCTCTCCCTCCTATCCTCCACCGCAAGCAATTCGATTCTCGAGTCTTTCACTAACAGAAACAGCAACAGCAGAGACTCGTCCCCTCTTCGAGTTCAAGATCGAATCTTGTTTCCCGATCACGTTCTTCTCATTGTGCCCAATAGGTTTCGCCAAAACGACCAATTGGAGTGCGTTTACCATAGATTATCCAACGGTTCAGATGAGCTTCTTCAAGATGGAGAAAAGAATCCGCACCTGGATTTTGCTATTCGACCGGTTTTGTCCACCGACGTCTACGACGAGCTCCGTTCCATCGCCAGGTGTCCGCTGCCGTCGAATAATTACTCGGAGGCCGTCGATTTGCGGAGGCGTGGCGGCGGTTACGATTGGACGGCTGGGATTAACGGGACGGCTGGGATTAACGGGACGGCTTATCCTTGGGACAGAGTAGTTTACGAGGCGGTTATTGATATTGATGGAGACACGGCGGTTGTGTTCGTTAAGGGGTTGAACCTCAGGCCCCACAGGAAATCGGATCCGACCCGACTCACTTGCCATTTCGGGTTGGGCAACAATGGCAACTGGGAAAAAGACCAGGGCTTTGTGCTCACCACTGAAGCTGTCACGGCGGCTCAGGAAGTTGTCCGGTGCTTGCTGCCCCGGACTATCCGAAACAACCCGGATAAGACCCATGGAGTTCGGGTCACGATTGGTTACAACACTGGCAGCGCCAGAGCTCCAGTTCATGTCACTCTGCCTTCTGTGGCCACACTTTACAGTTCTAAATCCACTGTGAGAAACGAAAACCAGAAGAAGAAGAAACACGAGCTTTGTGCTTGCACCATGTTGTGGAACCAAGCACCAGCGCTAAAAGAGTGGGTTATGTACCACGCTTGGCTTGGAGTTGAGCGCTGGTTCATTTACGACAACAACAGTGACGACGGGATTGAAGATGTGGTTCAGGAGCTTGAGTTGCAGGCCTACAATGTCAGCAGGCAGAGCTGGCCATGGATCAAAACCCAAGAAGCAGGCTTTTCGCGTTGTGCTTTGAGAGCAAGAGACGAGTGCCATTGGGTTGGCTTCTTTGATGTCGACGAGTTCTTCTACTTCCCTAGGGCGTTTCGGCACCACAGAGGAGACGGTGTTCCTGGTGAAAACTCGCTTCGAAACCTTGTTTCGAATTATTCCTATTCGCCGACGATTGGGGAGATCAGAACAGATTGCCATAGCTTTGGGCCATCTGGGCTGAGTTCACATCCATCGCAGGGTGTCACTGTTGGGTACACTTGCAGGCTGCAAAGCCCTGAGAGGCACAAGTCTATAGTAAGGGCAGATTTGCTTGATGTTACTCTGCTCAATGTGGTTCACCATTTTAGGCTGAGACAAGGTTTCAGGCACCTGAATGTGCCTGCAAATGTTGCTGTCATAAACCATTACAAATACCAGGTTTGGGAGACTTTCAGGGCCAAGTTTTTCAGAAGGGTAGCAACCTATGTTGTTGATTGGCAGGAGGATCAAAACCAGGGGTCAAAAGATAGGGCACCTGGGCTAGGAACTGAGGCCATTGAGCCACCCAATTGGCGGTTGAGGTTCTGCGAGGTTTGGGACACTGGCCTTAAAGACTATGTTTTGGGTTACTTTGCTGATCCTGCAACTGGGTCACTGCCATGGGAGAAGTCTCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

622

Amino Acids

70.99

Weight (kDa)

8.79

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27200
fragaria_vesca FvH4_4g35330
malus_domestica MD16G1083500.v1.1
prunus_persica Prupe.1G262500_v2.0.a1
pyrus_communis pycom13g07280 pycom16g07240
rosa_chinensis RchiOBHm_Chr4g0444941
rosa_laevigata RLG00000005785
rosa_multiflora Rmu_sc0011561.1_g000002 Rmu_sc0038487.1_g000001
rosa_roxburghii Rroxscaffold_5G00385430
rosa_rugosa Rorug04G0356500
rosa_samantha Rh4BG429800 Rh4CG444700 Rh4DG425900
rosa_wichuraiana Rw4G035840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccB1I GGYRCC 3 cut(s) 1302, 1572, 1717
AccB7I CCANNNNNTGG 1 cut(s) 1026
AccI GTMKAC 2 cut(s) 471, 1269
AccII CGCG 1 cut(s) 1216
AclWI GGATC 5 cut(s) 707, 720, 1196, 1698, 1817
AcoI YGGCCR 2 cut(s) 942, 1181
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 2 cut(s) 161, 468
AfaI GTAC 2 cut(s) 1064, 1460
AfeI AGCGCT 2 cut(s) 1044, 1088
AfiI CCNNNNNNNGG 9 cut(s) 90, 495, 1026, 1379, 1442, 1627, 1727, 1758, 1832
AgeI ACCGGT 1 cut(s) 451
AgsI TTSAA 4 cut(s) 293, 410, 688, 1127
AjnI CCWGG 7 cut(s) 432, 494, 771, 1324, 1620, 1698, 1720
AloI GAACNNNNNNTCC 2 cut(s) 1305, 1337
AluBI AGCT 8 cut(s) 403, 481, 797, 914, 1006, 1144, 1179, 1407
AluI AGCT 8 cut(s) 403, 481, 797, 914, 1006, 1144, 1179, 1407
Alw21I GWGCWC 3 cut(s) 483, 786, 916
Alw26I GTCTC 7 cut(s) 264, 651, 1230, 1308, 1552, 1625, 1860
AlwI GGATC 5 cut(s) 707, 720, 1196, 1698, 1817
Ama87I CYCGRG 1 cut(s) 236
Aor51HI AGCGCT 2 cut(s) 1044, 1088
ApeKI GCWGC 4 cut(s) 505, 832, 903, 1471
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AsiGI ACCGGT 1 cut(s) 451
AspA2I CCTAGG 1 cut(s) 1289
AspLEI GCGC 4 cut(s) 45, 908, 1045, 1089
AspS9I GGNCC 5 cut(s) 54, 171, 696, 1412, 1641
AsuC2I CCSGG 2 cut(s) 838, 857
AsuHPI GGTGA 4 cut(s) 172, 778, 1340, 1535
AsuII TTCGAA 3 cut(s) 144, 1342, 1355
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 54
AvrII CCTAGG 1 cut(s) 1289
AxyI CCTNAGG 1 cut(s) 692
BaeGI GKGCMC 2 cut(s) 336, 1720
BalI TGGCCA 2 cut(s) 944, 1183
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 3 cut(s) 1302, 1572, 1717
BanII GRGCYC 2 cut(s) 483, 916
BauI CACGAG 1 cut(s) 1001
Bbv12I GWGCWC 3 cut(s) 483, 786, 916
BbvI GCAGC 4 cut(s) 492, 819, 915, 1458
BccI CCATC 6 cut(s) 162, 407, 497, 647, 1423, 1444
BceAI ACGGC 7 cut(s) 493, 515, 585, 603, 621, 678, 819
BcgI CGANNNNNNTGC 8 cut(s) 210, 244, 711, 745, 992, 1026, 1194, 1228
BciT130I CCWGG 7 cut(s) 434, 496, 773, 1326, 1622, 1700, 1722
BcnI CCSGG 2 cut(s) 838, 857
BcoDI GTCTC 7 cut(s) 264, 651, 1230, 1308, 1552, 1625, 1860
BfaI CTAG 2 cut(s) 1290, 1727
BfmI CTRYAG 1 cut(s) 1497
BfoI RGCGCY 3 cut(s) 909, 1046, 1090
BglI GCCNNNNNGGC 1 cut(s) 1420
BisI GCNGC 7 cut(s) 31, 506, 553, 807, 833, 904, 1472
BlnI CCTAGG 1 cut(s) 1289
BlsI GCNGC 7 cut(s) 32, 507, 554, 808, 834, 905, 1473
Bme1390I CCNGG 9 cut(s) 434, 496, 773, 838, 857, 1326, 1622, 1700, 1722
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 5 cut(s) 54, 171, 696, 1412, 1641
BmiI GGNNCC 6 cut(s) 698, 714, 1031, 1304, 1574, 1719
BmrFI CCNGG 9 cut(s) 434, 496, 773, 838, 857, 1326, 1622, 1700, 1722
BmrI ACTGGG 2 cut(s) 769, 1842
BmuI ACTGGG 2 cut(s) 769, 1842
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpmI CTGGAG 1 cut(s) 900
Bpu10I CCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 3 cut(s) 144, 1342, 1355
BpuEI CTTGAG 1 cut(s) 1166
BpuMI CCSGG 2 cut(s) 838, 857
BsaHI GRCGYC 2 cut(s) 161, 468
BsaJI CCNNGG 9 cut(s) 614, 772, 836, 868, 1184, 1289, 1699, 1721, 1844
BsaWI WCCGGW 2 cut(s) 451, 822
BsaXI ACNNNNNCTCC 6 cut(s) 864, 894, 1133, 1163, 1305, 1335
Bsc4I CCNNNNNNNGG 9 cut(s) 90, 495, 1026, 1379, 1442, 1627, 1727, 1758, 1832
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 5 cut(s) 764, 904, 917, 1792, 1837
Bse21I CCTNAGG 1 cut(s) 692
BseBI CCWGG 7 cut(s) 434, 496, 773, 1326, 1622, 1700, 1722
BseDI CCNNGG 9 cut(s) 614, 772, 836, 868, 1184, 1289, 1699, 1721, 1844
BseGI GGATG 2 cut(s) 154, 1432
BseLI CCNNNNNNNGG 9 cut(s) 90, 495, 1026, 1379, 1442, 1627, 1727, 1758, 1832
BseMII CTCAG 7 cut(s) 77, 706, 824, 1415, 1473, 1547, 1725
BseNI ACTGG 5 cut(s) 764, 904, 917, 1792, 1837
BseRI GAGGAG 2 cut(s) 125, 1326
BseSI GKGCMC 2 cut(s) 336, 1720
BseXI GCAGC 4 cut(s) 492, 819, 915, 1458
BseYI CCCAGC 2 cut(s) 572, 590
Bsh1236I CGCG 1 cut(s) 1216
Bsh1285I CGRYCG 1 cut(s) 452
BshNI GGYRCC 3 cut(s) 1302, 1572, 1717
BshTI ACCGGT 1 cut(s) 451
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 3 cut(s) 483, 786, 916
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 5 cut(s) 158, 452, 823, 838, 857
BslFI GGGAC 6 cut(s) 67, 262, 598, 616, 632, 1796
BslI CCNNNNNNNGG 9 cut(s) 90, 495, 1026, 1379, 1442, 1627, 1727, 1758, 1832
BsmAI GTCTC 7 cut(s) 264, 651, 1230, 1308, 1552, 1625, 1860
BsmBI CGTCTC 2 cut(s) 1230, 1308
BsmFI GGGAC 6 cut(s) 67, 262, 598, 616, 632, 1796
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 3 cut(s) 144, 1342, 1355
Bsp1286I GDGCHC 5 cut(s) 336, 483, 786, 916, 1720
Bsp143I GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
Bsp19I CCATGG 3 cut(s) 868, 1184, 1844
BspCNI CTCAG 7 cut(s) 78, 705, 823, 1416, 1474, 1548, 1726
BspFNI CGCG 1 cut(s) 1216
BspLI GGNNCC 6 cut(s) 698, 714, 1031, 1304, 1574, 1719
BspPI GGATC 5 cut(s) 707, 720, 1196, 1698, 1817
BspT104I TTCGAA 3 cut(s) 144, 1342, 1355
BspT107I GGYRCC 3 cut(s) 1302, 1572, 1717
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 5 cut(s) 764, 904, 917, 1792, 1837
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 9 cut(s) 614, 772, 836, 868, 1184, 1289, 1699, 1721, 1844
BssMI GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
BssNI GRCGYC 2 cut(s) 161, 468
BssSI CACGAG 1 cut(s) 1001
BssT1I CCWWGG 5 cut(s) 614, 868, 1184, 1289, 1844
Bst2BI CACGAG 1 cut(s) 1001
Bst2UI CCWGG 7 cut(s) 434, 496, 773, 1326, 1622, 1700, 1722
Bst4CI ACNGT 6 cut(s) 392, 956, 970, 1112, 1319, 1453
Bst6I CTCTTC 2 cut(s) 288, 1863
BstACI GRCGYC 2 cut(s) 161, 468
BstAPI GCANNNNNTGC 1 cut(s) 1595
BstBI TTCGAA 3 cut(s) 144, 1342, 1355
BstDEI CTNAG 7 cut(s) 86, 692, 810, 1424, 1482, 1556, 1734
BstDSI CCRYGG 3 cut(s) 868, 1184, 1844
BstENI CCTNNNNNAGG 1 cut(s) 1725
BstF5I GGATG 2 cut(s) 154, 1432
BstFNI CGCG 1 cut(s) 1216
BstH2I RGCGCY 3 cut(s) 909, 1046, 1090
BstHHI GCGC 4 cut(s) 45, 908, 1045, 1089
BstKTI GATC 7 cut(s) 298, 316, 715, 1191, 1389, 1693, 1825
BstMAI GTCTC 7 cut(s) 264, 651, 1230, 1308, 1552, 1625, 1860
BstMBI GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 9 cut(s) 753, 803, 1150, 1176, 1180, 1229, 1420, 1595, 1826
BstNI CCWGG 7 cut(s) 434, 496, 773, 1326, 1622, 1700, 1722
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 9 cut(s) 432, 494, 771, 836, 855, 1324, 1620, 1698, 1720
BstSFI CTRYAG 1 cut(s) 1497
BstSLI GKGCMC 2 cut(s) 336, 1720
BstUI CGCG 1 cut(s) 1216
BstV1I GCAGC 4 cut(s) 492, 819, 915, 1458
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 3 cut(s) 1253, 1409, 1755
BstYI RGATCY 1 cut(s) 712
Bsu36I CCTNAGG 1 cut(s) 692
BtgI CCRYGG 3 cut(s) 868, 1184, 1844
BtgZI GCGATG 2 cut(s) 475, 1422
BtsCI GGATG 2 cut(s) 154, 1432
BtsI GCAGTG 1 cut(s) 1838
BtsIMutI CAGTG 7 cut(s) 789, 897, 966, 1117, 1449, 1785, 1838
CfoI GCGC 4 cut(s) 45, 908, 1045, 1089
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 5 cut(s) 54, 171, 696, 1412, 1641
CseI GACGC 1 cut(s) 150
CsiI ACCWGGT 1 cut(s) 1620
Csp6I GTAC 2 cut(s) 1063, 1459
CspAI ACCGGT 1 cut(s) 451
CviAII CATG 6 cut(s) 46, 869, 923, 1021, 1185, 1845
CviQI GTAC 2 cut(s) 1063, 1459
DdeI CTNAG 7 cut(s) 86, 692, 810, 1424, 1482, 1556, 1734
DpnI GATC 7 cut(s) 297, 315, 714, 1190, 1388, 1692, 1824
DpnII GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
EaeI YGGCCR 2 cut(s) 942, 1181
Eam1104I CTCTTC 2 cut(s) 288, 1863
EarI CTCTTC 2 cut(s) 288, 1863
Ecl136II GAGCTC 2 cut(s) 481, 914
Eco130I CCWWGG 5 cut(s) 614, 868, 1184, 1289, 1844
Eco147I AGGCCT 2 cut(s) 94, 1157
Eco24I GRGCYC 2 cut(s) 483, 916
Eco47I GGWCC 1 cut(s) 54
Eco47III AGCGCT 2 cut(s) 1044, 1088
Eco53kI GAGCTC 2 cut(s) 481, 914
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 2 cut(s) 481, 914
EcoNI CCTNNNNNAGG 1 cut(s) 1725
EcoO109I RGGNCCY 1 cut(s) 696
EcoRII CCWGG 7 cut(s) 432, 494, 771, 1324, 1620, 1698, 1720
EcoT14I CCWWGG 5 cut(s) 614, 868, 1184, 1289, 1844
EcoT38I GRGCYC 2 cut(s) 483, 916
ErhI CCWWGG 5 cut(s) 614, 868, 1184, 1289, 1844
Esp3I CGTCTC 2 cut(s) 1230, 1308
FaeI CATG 6 cut(s) 49, 872, 926, 1024, 1188, 1848
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 6 cut(s) 67, 262, 598, 616, 632, 1796
FatI CATG 6 cut(s) 45, 868, 922, 1020, 1184, 1844
FblI GTMKAC 2 cut(s) 471, 1269
Fnu4HI GCNGC 7 cut(s) 31, 506, 553, 807, 833, 904, 1472
FokI GGATG 2 cut(s) 141, 1419
FriOI GRGCYC 2 cut(s) 483, 916
Fsp4HI GCNGC 7 cut(s) 31, 506, 553, 807, 833, 904, 1472
FspBI CTAG 2 cut(s) 1290, 1727
GlaI GCGC 4 cut(s) 44, 907, 1044, 1088
GluI GCNGC 7 cut(s) 31, 506, 553, 807, 833, 904, 1472
GsaI CCCAGC 2 cut(s) 576, 594
GsuI CTGGAG 1 cut(s) 900
HaeII RGCGCY 3 cut(s) 909, 1046, 1090
HapII CCGG 5 cut(s) 158, 452, 823, 838, 857
HgaI GACGC 1 cut(s) 150
HhaI GCGC 4 cut(s) 45, 908, 1045, 1089
Hin1I GRCGYC 2 cut(s) 161, 468
Hin1II CATG 6 cut(s) 49, 872, 926, 1024, 1188, 1848
Hin6I GCGC 4 cut(s) 43, 906, 1043, 1087
HinP1I GCGC 4 cut(s) 43, 906, 1043, 1087
HincII GTYRAC 1 cut(s) 1270
HindII GTYRAC 1 cut(s) 1270
HinfI GANTC 7 cut(s) 14, 232, 239, 272, 300, 424, 723
HpaII CCGG 5 cut(s) 158, 452, 823, 838, 857
HphI GGTGA 4 cut(s) 172, 778, 1340, 1535
Hpy166II GTNNAC 8 cut(s) 373, 462, 472, 631, 1270, 1430, 1461, 1543
Hpy188I TCNGA 8 cut(s) 22, 397, 526, 712, 717, 848, 1391, 1655
Hpy188III TCNNGA 7 cut(s) 236, 293, 311, 410, 812, 883, 1139
Hpy8I GTNNAC 8 cut(s) 373, 462, 472, 631, 1270, 1430, 1461, 1543
Hpy99I CGWCG 8 cut(s) 166, 470, 479, 514, 536, 1121, 1274, 1378
HpyAV CCTTC 5 cut(s) 84, 124, 151, 945, 1650
HpyCH4III ACNGT 6 cut(s) 392, 956, 970, 1112, 1319, 1453
HpyCH4IV ACGT 2 cut(s) 318, 468
HpyCH4V TGCA 6 cut(s) 1017, 1153, 1467, 1474, 1589, 1829
HpyF10VI GCNNNNNNNGC 9 cut(s) 753, 803, 1150, 1176, 1180, 1229, 1420, 1595, 1826
HpyF3I CTNAG 7 cut(s) 86, 692, 810, 1424, 1482, 1556, 1734
HpySE526I ACGT 2 cut(s) 318, 468
Hsp92I GRCGYC 2 cut(s) 161, 468
Hsp92II CATG 6 cut(s) 49, 872, 926, 1024, 1188, 1848
HspAI GCGC 4 cut(s) 43, 906, 1043, 1087
Kzo9I GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
LmnI GCTCC 4 cut(s) 138, 486, 919, 1141
Lsp1109I GCAGC 4 cut(s) 492, 819, 915, 1458
MabI ACCWGGT 1 cut(s) 1620
MaeI CTAG 2 cut(s) 1290, 1727
MaeII ACGT 2 cut(s) 318, 468
MalI GATC 7 cut(s) 297, 315, 714, 1190, 1388, 1692, 1824
MboI GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
MfeI CAATTG 2 cut(s) 359, 1753
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 5 cut(s) 336, 483, 786, 916, 1720
MlsI TGGCCA 2 cut(s) 944, 1183
MluCI AATT 5 cut(s) 226, 359, 517, 1357, 1753
MluNI TGGCCA 2 cut(s) 944, 1183
MlyI GAGTC 4 cut(s) 8, 248, 266, 717
MmeI TCCRAC 2 cut(s) 411, 740
Mox20I TGGCCA 2 cut(s) 944, 1183
MscI TGGCCA 2 cut(s) 944, 1183
MseI TTAA 4 cut(s) 579, 597, 678, 1794
MslI CAYNNNNRTG 2 cut(s) 1578, 1843
Msp20I TGGCCA 2 cut(s) 944, 1183
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 5 cut(s) 158, 452, 823, 838, 857
MspR9I CCNGG 9 cut(s) 434, 496, 773, 838, 857, 1326, 1622, 1700, 1722
MunI CAATTG 2 cut(s) 359, 1753
MvaI CCWGG 7 cut(s) 434, 496, 773, 1326, 1622, 1700, 1722
MvnI CGCG 1 cut(s) 1216
MwoI GCNNNNNNNGC 9 cut(s) 753, 803, 1150, 1176, 1180, 1229, 1420, 1595, 1826
NciI CCSGG 2 cut(s) 838, 857
NcoI CCATGG 3 cut(s) 868, 1184, 1844
NdeII GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
NlaIII CATG 6 cut(s) 49, 872, 926, 1024, 1188, 1848
NlaIV GGNNCC 6 cut(s) 698, 714, 1031, 1304, 1574, 1719
NmuCI GTSAC 6 cut(s) 799, 880, 925, 1112, 1447, 1836
NspI RCATGY 1 cut(s) 49
NspV TTCGAA 3 cut(s) 144, 1342, 1355
PaeI GCATGC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 236
PceI AGGCCT 2 cut(s) 94, 1157
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 3 cut(s) 232, 300, 424
PflMI CCANNNNNTGG 1 cut(s) 1026
PinAI ACCGGT 1 cut(s) 451
PkrI GCNGC 7 cut(s) 32, 507, 554, 808, 834, 905, 1473
PleI GAGTC 4 cut(s) 8, 247, 266, 717
PpsI GAGTC 4 cut(s) 8, 247, 266, 717
Psp124BI GAGCTC 2 cut(s) 483, 916
Psp6I CCWGG 7 cut(s) 432, 494, 771, 1324, 1620, 1698, 1720
PspFI CCCAGC 2 cut(s) 572, 590
PspGI CCWGG 7 cut(s) 432, 494, 771, 1324, 1620, 1698, 1720
PspN4I GGNNCC 6 cut(s) 698, 714, 1031, 1304, 1574, 1719
PspPI GGNCC 5 cut(s) 54, 171, 696, 1412, 1641
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 2 cut(s) 1064, 1460
RsaNI GTAC 2 cut(s) 1063, 1459
RseI CAYNNNNRTG 2 cut(s) 1578, 1843
SacI GAGCTC 2 cut(s) 483, 916
SalI GTCGAC 1 cut(s) 1268
SaqAI TTAA 4 cut(s) 579, 597, 678, 1794
SatI GCNGC 7 cut(s) 31, 506, 553, 807, 833, 904, 1472
Sau3AI GATC 7 cut(s) 295, 313, 712, 1188, 1386, 1690, 1822
Sau96I GGNCC 5 cut(s) 54, 171, 696, 1412, 1641
SchI GAGTC 4 cut(s) 8, 248, 266, 717
ScrFI CCNGG 9 cut(s) 434, 496, 773, 838, 857, 1326, 1622, 1700, 1722
SduI GDGCHC 5 cut(s) 336, 483, 786, 916, 1720
SexAI ACCWGGT 1 cut(s) 1620
SfcI CTRYAG 1 cut(s) 1497
Sfr274I CTCGAG 1 cut(s) 236
SfuI TTCGAA 3 cut(s) 144, 1342, 1355
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 1578, 1843
SmlI CTYRAG 2 cut(s) 236, 1145
SmoI CTYRAG 2 cut(s) 236, 1145
SphI GCATGC 1 cut(s) 49
Sse9I AATT 5 cut(s) 226, 359, 517, 1357, 1753
SseBI AGGCCT 2 cut(s) 94, 1157
SspMI CTAG 2 cut(s) 1290, 1727
SstI GAGCTC 2 cut(s) 483, 916
StuI AGGCCT 2 cut(s) 94, 1157
StyD4I CCNGG 9 cut(s) 432, 494, 771, 836, 855, 1324, 1620, 1698, 1720
StyI CCWWGG 5 cut(s) 614, 868, 1184, 1289, 1844
TaaI ACNGT 6 cut(s) 392, 956, 970, 1112, 1319, 1453
TaiI ACGT 2 cut(s) 321, 471
TaqII GACCGA 1 cut(s) 42
TasI AATT 5 cut(s) 226, 359, 517, 1357, 1753
TauI GCSGC 3 cut(s) 33, 555, 809
TfiI GAWTC 3 cut(s) 232, 300, 424
Tru1I TTAA 4 cut(s) 579, 597, 678, 1794
Tru9I TTAA 4 cut(s) 579, 597, 678, 1794
TscAI CASTG 7 cut(s) 796, 904, 973, 1117, 1456, 1792, 1845
TseFI GTSAC 6 cut(s) 799, 880, 925, 1112, 1447, 1836
TseI GCWGC 4 cut(s) 505, 832, 903, 1471
Tsp45I GTSAC 6 cut(s) 799, 880, 925, 1112, 1447, 1836
TspDTI ATGAA 3 cut(s) 109, 911, 1084
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 7 cut(s) 796, 904, 973, 1117, 1456, 1792, 1845
Van91I CCANNNNNTGG 1 cut(s) 1026
VpaK11BI GGWCC 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 1725
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 1073
XhoI CTCGAG 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 1289
XmiI GTMKAC 2 cut(s) 471, 1269
XspI CTAG 2 cut(s) 1290, 1727
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.