Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Forward (+)

52876150 .. 52881279

Gene Structure 5130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0356500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACAGAGGGTGGTTGTTGTACGAATGTGATGAATAGCGGAATCAGAGCACTAGTGGAAGCCATTCACTCTACTCCCACTCAGTCCGTTCTCTATCTCTCCGGCGGAGCCTCTCAGGCGGTGGCGTGGCTGCTCTCCGTTCCCGGGGCCTCAAGTACAGTCCTGGAAACTGTAGTGCCTTATTCCCGAATGTCTATGATCCAATTACTCGGCAAGATTCCGGACAAGTTTTGTAGCCAGCACACTGCTGAAGAAATGGCTCTGTTGGCTTACAATCGCGCTCTCAAGCTCTCCTCACCAGGTTCCCCAGTTCTTGGTGTGGGTTTCACTGGTTCTTTGGCTAGCTCACATCCAAAGCTCGGGGACCACAGGTTTTATTTGTCAACAAGGACATCTGACAGACTCTCGGTATCGACAGTGACCCTTTCCAAGGGTTTACGAAACCGAGAGGAAGAAGATATGGTTGCAAGTCATCTTGTACTCAAGGCAATTGCAAATGCGTGCAAAGTTCCCGGAACATTTGTTTCAGATCTCACTGAATCTGAAGTGCCTGATGAATGTGAAAAACAGTTCAGCGAAGATGAAGAATTAGAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCCTTTTCAAGTGAGCCATCTGTGCCAATTGCAGAAAGAAGGATAATACTGTCTGGTTCTTTTAATCCATTACACGAAGGTCACTTCAAGCTATTGGAGGTTGCTTCCAGCATCTGTGGTGACGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCGATATCACAAATCAAAGATCGTGTCAAGCAATTTCAAAAAGTTGGTCATAATTTTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

289

Amino Acids

31.33

Weight (kDa)

5.78

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	3 cut(s)	39, 105, 119
AclWI	GGATC	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	270, 564
AfaI	GTAC	3 cut(s)	22, 157, 480
AfiI	CCNNNNNNNGG	4 cut(s)	144, 314, 359, 430
AgsI	TTSAA	5 cut(s)	622, 639, 718, 770, 842
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	162, 298
AluBI	AGCT	4 cut(s)	289, 345, 358, 721
AluI	AGCT	4 cut(s)	289, 345, 358, 721
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	744
Ama87I	CYCGRG	2 cut(s)	143, 359
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	130
ArsI	GACNNNNNNTTYG	4 cut(s)	813, 835, 845, 867
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	147, 364
AsuC2I	CCSGG	3 cut(s)	144, 145, 513
AsuHPI	GGTGA	2 cut(s)	288, 761
AsuNHI	GCTAGC	1 cut(s)	341
AvaI	CYCGRG	2 cut(s)	143, 359
AvaII	GGWCC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	769
BciT130I	CCWGG	2 cut(s)	164, 300
BcnI	CCSGG	3 cut(s)	144, 145, 513
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	2 cut(s)	53, 342
BfmI	CTRYAG	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	5 cut(s)	144, 145, 164, 300, 513
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	2 cut(s)	143, 359
BmgT120I	GGNCC	2 cut(s)	147, 364
BmiI	GGNNCC	4 cut(s)	109, 148, 304, 365
BmrFI	CCNGG	5 cut(s)	144, 145, 164, 300, 513
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	750
BmtI	GCTAGC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	302
BpuEI	CTTGAG	3 cut(s)	136, 269, 467
BpuMI	CCSGG	3 cut(s)	144, 145, 513
BsaJI	CCNNGG	3 cut(s)	143, 144, 429
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 314, 359, 430
Bse1I	ACTGG	2 cut(s)	308, 334
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	164, 300
BseDI	CCNNGG	3 cut(s)	143, 144, 429
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	4 cut(s)	144, 314, 359, 430
BseMII	CTCAG	2 cut(s)	95, 128
BseNI	ACTGG	2 cut(s)	308, 334
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	2 cut(s)	143, 359
BsiSI	CCGG	4 cut(s)	102, 144, 221, 513
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	144, 314, 359, 430
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	2 cut(s)	143, 359
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	198, 529, 823
BspACI	CCGC	3 cut(s)	39, 105, 119
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	94, 127
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	109, 148, 304, 365
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	308, 334
BssECI	CCNNGG	3 cut(s)	143, 144, 429
BssMI	GATC	3 cut(s)	198, 529, 823
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	164, 300
Bst4CI	ACNGT	5 cut(s)	160, 172, 418, 570, 681
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	239, 343, 502
BstDEI	CTNAG	2 cut(s)	81, 114
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	201, 532, 826
BstMBI	GATC	3 cut(s)	198, 529, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 266, 652, 762, 785
BstNI	CCWGG	2 cut(s)	164, 300
BstSCI	CCNGG	5 cut(s)	142, 143, 162, 298, 511
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	243, 327, 423, 534
Cac8I	GCNNGC	3 cut(s)	239, 343, 502
CaiI	CAGNNNCTG	1 cut(s)	744
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	147, 364
Cfr9I	CCCGGG	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	21, 156, 479
CviAII	CATG	1 cut(s)	762
CviQI	GTAC	3 cut(s)	21, 156, 479
DdeI	CTNAG	2 cut(s)	81, 114
DpnI	GATC	3 cut(s)	200, 531, 825
DpnII	GATC	3 cut(s)	198, 529, 823
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	270, 564
Eco88I	CYCGRG	2 cut(s)	143, 359
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	162, 298
EcoRV	GATATC	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	765
FaiI	YATR	6 cut(s)	197, 461, 602, 616, 763, 855
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	761
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	53, 342
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	4 cut(s)	102, 144, 221, 513
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	765
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	4 cut(s)	42, 217, 402, 539
HpaII	CCGG	4 cut(s)	102, 144, 221, 513
HphI	GGTGA	2 cut(s)	288, 761
Hpy166II	GTNNAC	2 cut(s)	384, 437
Hpy188I	TCNGA	4 cut(s)	47, 397, 529, 544
Hpy188III	TCNNGA	2 cut(s)	186, 221
Hpy8I	GTNNAC	2 cut(s)	384, 437
HpyAV	CCTTC	2 cut(s)	663, 701
HpyCH4III	ACNGT	5 cut(s)	160, 172, 418, 570, 681
HpyCH4V	TGCA	5 cut(s)	467, 494, 504, 662, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 266, 652, 762, 785
HpyF3I	CTNAG	2 cut(s)	81, 114
Hsp92II	CATG	1 cut(s)	765
HspAI	GCGC	1 cut(s)	279
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	198, 529, 823
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	750
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	53, 342
MaeIII	GTNAC	3 cut(s)	418, 710, 749
MalI	GATC	3 cut(s)	200, 531, 825
MboI	GATC	3 cut(s)	198, 529, 823
MboII	GAAGA	5 cut(s)	263, 464, 467, 590, 596
MfeI	CAATTG	2 cut(s)	489, 657
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	6 cut(s)	203, 489, 587, 657, 836, 856
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	121, 160, 304, 442, 721, 807
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	693
MspI	CCGG	4 cut(s)	102, 144, 221, 513
MspR9I	CCNGG	5 cut(s)	144, 145, 164, 300, 513
MunI	CAATTG	2 cut(s)	489, 657
MvaI	CCWGG	2 cut(s)	164, 300
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	5 cut(s)	116, 266, 652, 762, 785
NciI	CCSGG	3 cut(s)	144, 145, 513
NdeII	GATC	3 cut(s)	198, 529, 823
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	765
NlaIV	GGNNCC	4 cut(s)	109, 148, 304, 365
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	3 cut(s)	418, 710, 749
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	42, 217, 539
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	2 cut(s)	162, 511
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	162, 298
PspGI	CCWGG	2 cut(s)	162, 298
PspN4I	GGNNCC	4 cut(s)	109, 148, 304, 365
PspPI	GGNCC	2 cut(s)	147, 364
PstNI	CAGNNNCTG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	3 cut(s)	22, 157, 480
RsaNI	GTAC	3 cut(s)	21, 156, 479
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	198, 529, 823
Sau96I	GGNCC	2 cut(s)	147, 364
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	5 cut(s)	144, 145, 164, 300, 513
SduI	GDGCHC	1 cut(s)	52
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	364
SmaI	CCCGGG	1 cut(s)	145
SmlI	CTYRAG	3 cut(s)	151, 284, 482
SmoI	CTYRAG	3 cut(s)	151, 284, 482
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	6 cut(s)	203, 489, 587, 657, 836, 856
SsiI	CCGC	3 cut(s)	39, 105, 119
SspMI	CTAG	2 cut(s)	53, 342
StyD4I	CCNGG	5 cut(s)	142, 143, 162, 298, 511
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	5 cut(s)	160, 172, 418, 570, 681
TaqI	TCGA	2 cut(s)	413, 806
TasI	AATT	6 cut(s)	203, 489, 587, 657, 836, 856
TatI	WGTACW	2 cut(s)	155, 478
TfiI	GAWTC	3 cut(s)	42, 217, 539
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	4 cut(s)	250, 334, 423, 541
TseFI	GTSAC	3 cut(s)	418, 710, 749
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	3 cut(s)	418, 710, 749
TspDTI	ATGAA	3 cut(s)	47, 570, 597
TspGWI	ACGGA	2 cut(s)	76, 127
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	4 cut(s)	250, 334, 423, 541
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	428
XmaI	CCCGGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	53, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.