FvH4_4g35320

Cofactor assembly of complex C subunit B, CCB2/CCB4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007215
Physical Location & Seq
Reverse (-)
32664084 .. 32669102
5019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35320.t1

Sequence Viewer

Length: 882 bp
ATGGAAGCGGGAACGGGAAGCCTTCTCCGAAGTCCCACTCCACTCCCACGGACCCCAAAACGCCCTATCCGACGTCGTTTTGGCTCCTCTATTATCTCTCTGAATTCCGGTAACGATTACAGAGGCCCGAAGCCGAAGACCAATTTGGTCGCCGATTGGGTCTCTAACAACGATGACGCCGCTCGGAGCTTGCCGATTTACGCCGGCGGCGTCTCCCTCCTTGCCGTTCTCTTCAACCGCACGGCTTCTGACATCGCTCTCGTTGCTGACGCCAGCAGCTCACAGTCTAGGGCTGATTTGTTGACATTGGGATTGGCTGTGACGAACATTTTAGCAGGGCTGGTTTGGCTGTCAATCAGACCAAAATCTATTTCCAAGGTGGATCCTGAAGGGGTGGAATGCCGGAGGATGCGTTCTGATCTCCCCGAAACTCTAGTTTCCGAGTTATTGTGGGCGTGGGAATCTCTATCATATGCAACATGTTGCCGGTCTCTTGTTATAGTTTATGGTGGCAGAAATGTGCTTCAGATTGGTTTTGCAGCTGCAGCTTCTGATGGTGGTGAAGCTGTGGCCGTGGATGCTGATAAACTGATTCAAGGATCACTATATCGAGGTGTTATGAAATCAGGAGTTCAGAGTTATTTGGCCAACCTAGCTCTCTATCCTGGGAAGTCTGAGCTGCCATTTCTACCTTCAAACACACAGGCAGTAATATTGCAGCCTCTTGGAGACAATGGAATTGCAATAATTGGTGGTGACACAATTAGAGGATTCACAGCCTCTGATCAGGCATGGATTTCTTTAATTGGAGAGAAGCTGGATGCTACACTAGCAAGATGTGTGGATAACCTCTCATTGTCACAAGACCCAGTTTTGAAGTAA

Protein Analysis

294

Amino Acids

31.16

Weight (kDa)

8.32

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 64 - 273 2.1e-58 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 4 cut(s) 8, 180, 207, 238
AclWI GGATC 3 cut(s) 377, 390, 607
AcoI YGGCCR 2 cut(s) 570, 645
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 408, 509
AcyI GRCGYC 4 cut(s) 73, 177, 210, 270
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 235, 596, 696, 877
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 355, 387
AloI GAACNNNNNNTCC 2 cut(s) 397, 429
AluBI AGCT 8 cut(s) 189, 279, 542, 548, 566, 656, 679, 817
AluI AGCT 8 cut(s) 189, 279, 542, 548, 566, 656, 679, 817
Alw26I GTCTC 4 cut(s) 166, 217, 495, 723
AlwI GGATC 3 cut(s) 377, 390, 607
AlwNI CAGNNNCTG 2 cut(s) 551, 782
AoxI GGCC 3 cut(s) 124, 570, 645
ApeKI GCWGC 6 cut(s) 276, 539, 542, 545, 679, 718
ApoI RAATTY 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 51, 125
AsuHPI GGTGA 2 cut(s) 572, 767
AvaII GGWCC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 647
BamHI GGATCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 6 cut(s) 288, 529, 551, 557, 666, 730
BccI CCATC 1 cut(s) 548
BceAI ACGGC 3 cut(s) 209, 258, 557
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 4 cut(s) 166, 217, 495, 723
BfaI CTAG 4 cut(s) 288, 434, 653, 830
BfmI CTRYAG 1 cut(s) 543
BisI GCNGC 8 cut(s) 180, 208, 277, 540, 543, 546, 680, 719
BlsI GCNGC 8 cut(s) 181, 209, 278, 541, 544, 547, 681, 720
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 125
BmiI GGNNCC 3 cut(s) 53, 85, 384
BmrFI CCNGG 1 cut(s) 666
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 3 cut(s) 399, 568, 811
BmuI ACTGGG 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 143
BsaHI GRCGYC 4 cut(s) 73, 177, 210, 270
BsaI GGTCTC 2 cut(s) 166, 495
BsaJI CCNNGG 4 cut(s) 47, 375, 573, 665
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse118I RCCGGY 2 cut(s) 203, 486
Bse1I ACTGG 1 cut(s) 869
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 47, 375, 573, 665
BseGI GGATG 3 cut(s) 414, 583, 826
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 1 cut(s) 869
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 6 cut(s) 288, 529, 551, 557, 666, 730
BshFI GGCC 3 cut(s) 126, 572, 647
BsiSI CCGG 4 cut(s) 108, 204, 403, 487
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 4 cut(s) 166, 217, 495, 723
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 3 cut(s) 126, 572, 647
Bso31I GGTCTC 2 cut(s) 166, 495
Bsp143I GATC 4 cut(s) 382, 418, 599, 784
BspACI CCGC 4 cut(s) 8, 180, 207, 238
BspANI GGCC 3 cut(s) 126, 572, 647
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 53, 85, 384
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 3 cut(s) 377, 390, 607
BspTNI GGTCTC 2 cut(s) 166, 495
BsrBI CCGCTC 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 203, 486
BsrI ACTGG 1 cut(s) 869
BssAI RCCGGY 2 cut(s) 203, 486
BssECI CCNNGG 4 cut(s) 47, 375, 573, 665
BssMI GATC 4 cut(s) 382, 418, 599, 784
BssNI GRCGYC 4 cut(s) 73, 177, 210, 270
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 4 cut(s) 73, 177, 210, 270
BstC8I GCNNGC 3 cut(s) 191, 205, 274
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 2 cut(s) 47, 573
BstF5I GGATG 3 cut(s) 414, 583, 826
BstKTI GATC 4 cut(s) 385, 421, 602, 787
BstMAI GTCTC 4 cut(s) 166, 217, 495, 723
BstMBI GATC 4 cut(s) 382, 418, 599, 784
BstMWI GCNNNNNNNGC 6 cut(s) 263, 346, 545, 578, 653, 830
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 6 cut(s) 288, 529, 551, 557, 666, 730
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 3 cut(s) 126, 572, 647
BtgI CCRYGG 2 cut(s) 47, 573
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 414, 583, 826
Cac8I GCNNGC 3 cut(s) 191, 205, 274
CaiI CAGNNNCTG 2 cut(s) 551, 782
Cfr10I RCCGGY 2 cut(s) 203, 486
Cfr13I GGNCC 2 cut(s) 51, 125
CseI GACGC 3 cut(s) 185, 199, 278
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 2 cut(s) 480, 792
DdeI CTNAG 1 cut(s) 675
DpnI GATC 4 cut(s) 384, 420, 601, 786
DpnII GATC 4 cut(s) 382, 418, 599, 784
EaeI YGGCCR 2 cut(s) 570, 645
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 2 cut(s) 166, 495
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 408, 509
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 2 cut(s) 483, 795
FaiI YATR 8 cut(s) 472, 474, 481, 500, 507, 607, 620, 793
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 479, 791
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 8 cut(s) 180, 208, 277, 540, 543, 546, 680, 719
FokI GGATG 3 cut(s) 421, 590, 833
Fsp4HI GCNGC 8 cut(s) 180, 208, 277, 540, 543, 546, 680, 719
FspBI CTAG 4 cut(s) 288, 434, 653, 830
GluI GCNGC 8 cut(s) 180, 208, 277, 540, 543, 546, 680, 719
HaeIII GGCC 3 cut(s) 126, 572, 647
HapII CCGG 4 cut(s) 108, 204, 403, 487
HgaI GACGC 3 cut(s) 185, 199, 278
Hin1I GRCGYC 4 cut(s) 73, 177, 210, 270
Hin1II CATG 2 cut(s) 483, 795
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 3 cut(s) 461, 592, 771
HpaII CCGG 4 cut(s) 108, 204, 403, 487
HphI GGTGA 2 cut(s) 572, 767
Hpy166II GTNNAC 1 cut(s) 303
Hpy188III TCNNGA 2 cut(s) 386, 627
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 2 cut(s) 75, 78
HpyAV CCTTC 3 cut(s) 32, 383, 702
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 5 cut(s) 476, 539, 545, 718, 743
HpyF10VI GCNNNNNNNGC 6 cut(s) 263, 346, 545, 578, 653, 830
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 4 cut(s) 73, 177, 210, 270
Hsp92II CATG 2 cut(s) 483, 795
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 4 cut(s) 382, 418, 599, 784
LmnI GCTCC 2 cut(s) 89, 186
Lsp1109I GCAGC 6 cut(s) 288, 529, 551, 557, 666, 730
LweI GCATC 3 cut(s) 399, 568, 811
MaeI CTAG 4 cut(s) 288, 434, 653, 830
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 4 cut(s) 110, 319, 755, 858
MalI GATC 4 cut(s) 384, 420, 601, 786
MbiI CCGCTC 1 cut(s) 182
MboI GATC 4 cut(s) 382, 418, 599, 784
MboII GAAGA 2 cut(s) 148, 223
MflI RGATCY 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 6 cut(s) 103, 142, 738, 747, 762, 804
MluNI TGGCCA 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 9 cut(s) 97, 116, 227, 399, 605, 732, 761, 790, 860
Mox20I TGGCCA 1 cut(s) 647
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MscI TGGCCA 1 cut(s) 647
MseI TTAA 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 4 cut(s) 108, 204, 403, 487
MspR9I CCNGG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 6 cut(s) 263, 346, 545, 578, 653, 830
NaeI GCCGGC 1 cut(s) 205
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 382, 418, 599, 784
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 2 cut(s) 483, 795
NlaIV GGNNCC 3 cut(s) 53, 85, 384
NmuCI GTSAC 3 cut(s) 319, 755, 858
NspI RCATGY 1 cut(s) 483
PciI ACATGT 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 207
PctI GAATGC 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 461, 592, 771
PkrI GCNGC 8 cut(s) 181, 209, 278, 541, 544, 547, 681, 720
PscI ACATGT 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 53, 85, 384
PspPI GGNCC 2 cut(s) 51, 125
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 551, 782
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 542
SaqAI TTAA 1 cut(s) 803
SatI GCNGC 8 cut(s) 180, 208, 277, 540, 543, 546, 680, 719
Sau3AI GATC 4 cut(s) 382, 418, 599, 784
Sau96I GGNCC 2 cut(s) 51, 125
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 3 cut(s) 399, 568, 811
SfcI CTRYAG 1 cut(s) 543
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 51
Sse9I AATT 6 cut(s) 103, 142, 738, 747, 762, 804
SsiI CCGC 4 cut(s) 8, 180, 207, 238
SspI AATATT 1 cut(s) 714
SspMI CTAG 4 cut(s) 288, 434, 653, 830
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 610
TasI AATT 6 cut(s) 103, 142, 738, 747, 762, 804
TauI GCSGC 2 cut(s) 182, 210
TfiI GAWTC 3 cut(s) 461, 592, 771
Tru1I TTAA 1 cut(s) 803
Tru9I TTAA 1 cut(s) 803
TseFI GTSAC 3 cut(s) 319, 755, 858
TseI GCWGC 6 cut(s) 276, 539, 542, 545, 679, 718
Tsp45I GTSAC 3 cut(s) 319, 755, 858
TspDTI ATGAA 1 cut(s) 635
TspGWI ACGGA 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 483
XspI CTAG 4 cut(s) 288, 434, 653, 830
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.