Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Forward (+)

4803481 .. 4805513

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTCCAAGTCCTAAAGTCAACAAAAGTCACAAATCTATTTGTCCTTCATGCCTACAAAATTCAGCTAAACGACAGGCCGTTTCCAATCCAAAGCAAAATATCAAATATCAGCGCCACGTCACCTATTCCACAGATTTCGATGGAAGCGGGAAGCCTTGTCCGCAGTCCAATTCCATGGACTCCAAAACGCCCTTTCCGACGTCGTCTCGTCCCCGCTTTCCCGCGCAGCATCAGGGCGTCGAATTCAGACACTCGTTACAGAGGCCCAAAGCCCAAGAGAAATTGGGTCGCCGATTGGGTCTCCAACAACGACGACGCCGCTCGTAGCTTGCCGATATACGCCGGCGGCGCCTCTCTCATGGCCGTCCTCTTCAACCGCACCGTTTCGGACATCGCTCTCGTCGCTGACGCCAGTAGTTCACAGTCCAGAGCTGATTTATTGACGTTGGGATTGGCCGTGACCAACATACTAGCAGGTTTGGTGTGGCTGTCGATCAGGCCAAAATCTATATCTAAGGTGAGTCCGGAAGGGGTCGAATGCGAGCAGATGCATCCGAATCTTCCCAAGACTCTACTTTCTGAGTTGTTGTGGGCATGGGAATCTCTCTCCAGCGTGACATGCTGCCGGTCTCTAGTTATAGTTTATGATGGCAGATGTATCCTTCAGATTGGTTTTGCAGCCGAATTTTCCAATGGTGATGGAAAGGCTGTGGATGTGGATGCTGATAAACTGATGCAAGGATCACTCTATCGAGGGGTTATGAAATCAGGAGTTCAGAGCTATTTGGCCAACCTATATCTTTATCCTGGGAAATCCGAGCTACCATTTCTGCCTTCAAATACGCAGGCAGTAATATTGCAGCCACTTGGAGACAAAGGGATTGCTGTAATTGGTGGTGACACAGTAAGAGGATTCACATCGTCTGATCAGGCATGGATTTCATTAATCGGAGAGAAGCTCGATTCTACGCTATCAAAATACGTGGAAAACCTCCCATTGGCTGTACAAGATCCGGTTCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

343

Amino Acids

37.33

Weight (kDa)

9.37

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	7 cut(s)	149, 163, 216, 224, 321, 348, 379
AclWI	GGATC	2 cut(s)	751, 1007
AcoI	YGGCCR	3 cut(s)	363, 456, 789
AcsI	RAATTY	3 cut(s)	60, 244, 686
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
AfaI	GTAC	1 cut(s)	1008
AfiI	CCNNNNNNNGG	1 cut(s)	1000
AgsI	TTSAA	2 cut(s)	376, 840
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	808
AluBI	AGCT	6 cut(s)	67, 330, 434, 783, 823, 961
AluI	AGCT	6 cut(s)	67, 330, 434, 783, 823, 961
Alw26I	GTCTC	4 cut(s)	212, 307, 636, 867
AlwI	GGATC	2 cut(s)	751, 1007
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	6 cut(s)	77, 265, 363, 456, 500, 789
ApeKI	GCWGC	4 cut(s)	228, 624, 680, 862
ApoI	RAATTY	3 cut(s)	60, 244, 686
AseI	ATTAAT	1 cut(s)	947
AspLEI	GCGC	3 cut(s)	116, 228, 353
AspS9I	GGNCC	2 cut(s)	4, 266
AsuHPI	GGTGA	4 cut(s)	114, 532, 710, 911
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	240, 611, 692, 874
BccI	CCATC	3 cut(s)	136, 644, 695
BceAI	ACGGC	3 cut(s)	64, 350, 443
BciT130I	CCWGG	1 cut(s)	810
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	4 cut(s)	212, 307, 636, 867
BfaI	CTAG	2 cut(s)	473, 635
BfoI	RGCGCY	2 cut(s)	117, 354
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	6 cut(s)	229, 321, 349, 625, 681, 863
BlsI	GCNGC	6 cut(s)	230, 322, 350, 626, 682, 864
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	4, 266
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	810
BmsI	GCATC	5 cut(s)	240, 540, 562, 712, 726
BplI	GAGNNNNNCTC	2 cut(s)	945, 977
BpmI	CTGGAG	1 cut(s)	595
BsaAI	YACGTR	1 cut(s)	985
BsaBI	GATNNNNATC	1 cut(s)	919
BsaHI	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
BsaI	GGTCTC	2 cut(s)	307, 636
BsaJI	CCNNGG	2 cut(s)	176, 809
BsaWI	WCCGGW	2 cut(s)	526, 1015
Bsc4I	CCNNNNNNNGG	1 cut(s)	1000
Bse118I	RCCGGY	2 cut(s)	344, 627
Bse1I	ACTGG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	919
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	176, 809
BseGI	GGATG	3 cut(s)	553, 721, 727
BseJI	GATNNNNATC	1 cut(s)	919
BseLI	CCNNNNNNNGG	1 cut(s)	1000
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	4 cut(s)	240, 611, 692, 874
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	6 cut(s)	79, 267, 365, 458, 502, 791
BshNI	GGYRCC	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	345, 527, 628, 1016
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	1000
BsmAI	GTCTC	4 cut(s)	212, 307, 636, 867
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	6 cut(s)	79, 267, 365, 458, 502, 791
Bso31I	GGTCTC	2 cut(s)	307, 636
Bsp13I	TCCGGA	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	4 cut(s)	495, 743, 928, 1012
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	7 cut(s)	149, 163, 216, 224, 321, 348, 379
BspANI	GGCC	6 cut(s)	79, 267, 365, 458, 502, 791
BspCNI	CTCAG	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	751, 1007
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	2 cut(s)	307, 636
BsrBI	CCGCTC	1 cut(s)	323
BsrFI	RCCGGY	2 cut(s)	344, 627
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	344, 627
BssECI	CCNNGG	2 cut(s)	176, 809
BssMI	GATC	4 cut(s)	495, 743, 928, 1012
BssNI	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	3 cut(s)	385, 426, 907
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
BstAUI	TGTACA	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	4 cut(s)	332, 346, 545, 849
BstDEI	CTNAG	2 cut(s)	516, 582
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	553, 721, 727
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	2 cut(s)	117, 354
BstHHI	GCGC	3 cut(s)	116, 228, 353
BstKTI	GATC	4 cut(s)	498, 746, 931, 1015
BstMAI	GTCTC	4 cut(s)	212, 307, 636, 867
BstMBI	GATC	4 cut(s)	495, 743, 928, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 350, 404, 621
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	808
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	4 cut(s)	240, 611, 692, 874
BstX2I	RGATCY	1 cut(s)	1012
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	1012
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	6 cut(s)	79, 267, 365, 458, 502, 791
BtgI	CCRYGG	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	553, 721, 727
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	332, 346, 545, 849
CfoI	GCGC	3 cut(s)	116, 228, 353
Cfr10I	RCCGGY	2 cut(s)	344, 627
Cfr13I	GGNCC	2 cut(s)	4, 266
CseI	GACGC	3 cut(s)	228, 326, 419
Csp6I	GTAC	1 cut(s)	1007
CspCI	CAANNNNNGTGG	2 cut(s)	966, 1001
CviAII	CATG	6 cut(s)	50, 177, 361, 597, 621, 936
CviQI	GTAC	1 cut(s)	1007
DdeI	CTNAG	2 cut(s)	516, 582
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	4 cut(s)	497, 745, 930, 1014
DpnII	GATC	4 cut(s)	495, 743, 928, 1012
EaeI	YGGCCR	3 cut(s)	363, 456, 789
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	176
Eco31I	GGTCTC	2 cut(s)	307, 636
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	555
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	6 cut(s)	53, 180, 364, 600, 624, 939
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	49, 176, 360, 596, 620, 935
FauI	CCCGC	3 cut(s)	142, 223, 231
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	6 cut(s)	229, 321, 349, 625, 681, 863
FokI	GGATG	3 cut(s)	540, 728, 734
Fsp4HI	GCNGC	6 cut(s)	229, 321, 349, 625, 681, 863
FspBI	CTAG	2 cut(s)	473, 635
GlaI	GCGC	3 cut(s)	115, 227, 352
GluI	GCNGC	6 cut(s)	229, 321, 349, 625, 681, 863
GsuI	CTGGAG	1 cut(s)	595
HaeII	RGCGCY	2 cut(s)	117, 354
HaeIII	GGCC	6 cut(s)	79, 267, 365, 458, 502, 791
HapII	CCGG	4 cut(s)	345, 527, 628, 1016
HgaI	GACGC	3 cut(s)	228, 326, 419
HhaI	GCGC	3 cut(s)	116, 228, 353
Hin1I	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
Hin1II	CATG	6 cut(s)	53, 180, 364, 600, 624, 939
Hin6I	GCGC	3 cut(s)	114, 226, 351
HinP1I	GCGC	3 cut(s)	114, 226, 351
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	7 cut(s)	181, 523, 559, 571, 602, 915, 965
HpaII	CCGG	4 cut(s)	345, 527, 628, 1016
HphI	GGTGA	4 cut(s)	114, 532, 710, 911
Hpy166II	GTNNAC	2 cut(s)	21, 422
Hpy188III	TCNNGA	3 cut(s)	429, 527, 771
Hpy8I	GTNNAC	2 cut(s)	21, 422
Hpy99I	CGWCG	6 cut(s)	204, 207, 244, 317, 320, 407
HpyAV	CCTTC	4 cut(s)	56, 524, 674, 846
HpyCH4III	ACNGT	3 cut(s)	385, 426, 907
HpyCH4IV	ACGT	4 cut(s)	119, 202, 446, 984
HpyCH4V	TGCA	4 cut(s)	553, 680, 739, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 350, 404, 621
HpyF3I	CTNAG	2 cut(s)	516, 582
HpySE526I	ACGT	4 cut(s)	119, 202, 446, 984
Hsp92I	GRCGYC	5 cut(s)	202, 239, 318, 351, 411
Hsp92II	CATG	6 cut(s)	53, 180, 364, 600, 624, 939
HspAI	GCGC	3 cut(s)	114, 226, 351
KasI	GGCGCC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	495, 743, 928, 1012
Lsp1109I	GCAGC	4 cut(s)	240, 611, 692, 874
LweI	GCATC	5 cut(s)	240, 540, 562, 712, 726
MaeI	CTAG	2 cut(s)	473, 635
MaeII	ACGT	4 cut(s)	119, 202, 446, 984
MaeIII	GTNAC	6 cut(s)	28, 120, 257, 460, 616, 899
MalI	GATC	4 cut(s)	497, 745, 930, 1014
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	4 cut(s)	495, 743, 928, 1012
MboII	GAAGA	2 cut(s)	364, 554
MflI	RGATCY	1 cut(s)	1012
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	6 cut(s)	60, 171, 244, 283, 686, 891
MluNI	TGGCCA	1 cut(s)	791
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	175, 532, 565
MmeI	TCCRAC	2 cut(s)	223, 330
MnlI	CCTC	6 cut(s)	257, 364, 380, 749, 905, 1004
Mox20I	TGGCCA	1 cut(s)	791
Mph1103I	ATGCAT	1 cut(s)	555
MreI	CGCCGGCG	1 cut(s)	344
MroI	TCCGGA	1 cut(s)	526
MroNI	GCCGGC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	1 cut(s)	947
Msp20I	TGGCCA	1 cut(s)	791
MspI	CCGG	4 cut(s)	345, 527, 628, 1016
MspR9I	CCNGG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	162, 350, 404, 621
NaeI	GCCGGC	1 cut(s)	346
NarI	GGCGCC	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	4 cut(s)	495, 743, 928, 1012
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	6 cut(s)	53, 180, 364, 600, 624, 939
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	5 cut(s)	28, 120, 460, 616, 899
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PctI	GAATGC	1 cut(s)	545
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	4 cut(s)	559, 602, 915, 965
PflFI	GACNNNGTC	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	230, 322, 350, 626, 682, 864
PleI	GAGTC	3 cut(s)	175, 531, 565
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	3 cut(s)	175, 531, 565
Ppu21I	YACGTR	1 cut(s)	985
PshBI	ATTAAT	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	4, 266
PsuI	RGATCY	1 cut(s)	1012
PsyI	GACNNNGTC	1 cut(s)	204
RsaI	GTAC	1 cut(s)	1008
RsaNI	GTAC	1 cut(s)	1007
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	6 cut(s)	229, 321, 349, 625, 681, 863
Sau3AI	GATC	4 cut(s)	495, 743, 928, 1012
Sau96I	GGNCC	2 cut(s)	4, 266
SchI	GAGTC	3 cut(s)	175, 532, 565
ScrFI	CCNGG	1 cut(s)	810
SfaNI	GCATC	5 cut(s)	240, 540, 562, 712, 726
SfoI	GGCGCC	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	6 cut(s)	60, 171, 244, 283, 686, 891
SsiI	CCGC	7 cut(s)	149, 163, 216, 224, 321, 348, 379
SspDI	GGCGCC	1 cut(s)	350
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	2 cut(s)	473, 635
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	3 cut(s)	385, 426, 907
TaiI	ACGT	4 cut(s)	122, 205, 449, 987
TaqI	TCGA	6 cut(s)	140, 242, 494, 537, 754, 963
TasI	AATT	6 cut(s)	60, 171, 244, 283, 686, 891
TatI	WGTACW	1 cut(s)	1006
TauI	GCSGC	2 cut(s)	323, 351
TfiI	GAWTC	4 cut(s)	559, 602, 915, 965
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TseFI	GTSAC	5 cut(s)	28, 120, 460, 616, 899
TseI	GCWGC	4 cut(s)	228, 624, 680, 862
Tsp45I	GTSAC	5 cut(s)	28, 120, 460, 616, 899
TspDTI	ATGAA	3 cut(s)	38, 779, 933
Tth111I	GACNNNGTC	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	947
XapI	RAATTY	3 cut(s)	60, 244, 686
XceI	RCATGY	1 cut(s)	624
XspI	CTAG	2 cut(s)	473, 635
ZraI	GACGTC	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.