Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011561.1

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Reverse (-)

16396 .. 18554

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011561.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggaagcgggaacgagtagccttctcctcagtcccactccaattcaacggagcccaaaacgcccgctccgacgtcgttttggccccactttcccgcgcttcaatattagggctcagaattccggtagtgattacagaggcccgaagccgaagacgaatttggtcgccgattgggtctctaacaacgacgacgccgctcggagcttgccgatttacgccggcggcgtctccctcttggccgttctcttcaaccgcaccgtttccgacatcgctcccgttgctgacgccagcagttcacagtctagagctgatttgttgacattgggattggctgtgaccaacatactagcaggtctggtatggctgtcaatcagaccaaaatctatatcaaaggtgaatcccaaaggggtcgaatgccggaggatgcattccgatctccccacaactctagtttccgagttatcgtgggcatgggaatgtctgtcaaatgcgacatgttgcaggtctcttgttatagtttatggtggcagaaatatacttcagattggttttgcagctgcatcttccaatggtgatggcaaagctgtggctgtggatgctcataaactgattcaaggatccctctatcgaggtgttatgaaatcaggagttcagagctatttggccaacctagctctctatcctgggaagtctgagctgccatttctaccttcaaacacacaggcagtaatattgcagccacttggagacagaggaattgcaataattggtggtgacacaataaggggattcacagcctctgatcaggcatggatttcattaattggagagaagctggatgctacactagcacgatgtgtagataacctcccgttgtcgcaagacccagttttgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

299

Amino Acids

31.98

Weight (kDa)

9.58

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	76
Acc36I	ACCTGC	2 cut(s)	341, 492
AccBSI	CCGCTC	2 cut(s)	67, 197
AccII	CGCG	1 cut(s)	97
AciI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
AclWI	GGATC	2 cut(s)	612, 625
AcoI	YGGCCR	2 cut(s)	237, 663
AcsI	RAATTY	2 cut(s)	118, 157
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	4 cut(s)	73, 192, 225, 285
AdeI	CACNNNGTG	1 cut(s)	857
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	6 cut(s)	47, 103, 250, 614, 714, 895
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	8 cut(s)	204, 308, 557, 584, 657, 674, 697, 835
AluI	AGCT	8 cut(s)	204, 308, 557, 584, 657, 674, 697, 835
Alw26I	GTCTC	4 cut(s)	181, 232, 510, 741
AlwI	GGATC	2 cut(s)	612, 625
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	4 cut(s)	82, 139, 237, 663
ApeKI	GCWGC	4 cut(s)	554, 557, 697, 736
ApoI	RAATTY	2 cut(s)	118, 157
AseI	ATTAAT	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	83, 140
AsuHPI	GGTGA	3 cut(s)	406, 584, 785
BalI	TGGCCA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	56, 115
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	544, 566, 684, 748
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	4 cut(s)	181, 232, 510, 741
BfaI	CTAG	5 cut(s)	303, 347, 449, 671, 848
BfuAI	ACCTGC	2 cut(s)	341, 492
BisI	GCNGC	6 cut(s)	195, 223, 555, 558, 698, 737
BlsI	GCNGC	6 cut(s)	196, 224, 556, 559, 699, 738
Bme1390I	CCNGG	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	83, 140
BmiI	GGNNCC	3 cut(s)	53, 85, 619
BmrFI	CCNGG	1 cut(s)	684
BmrI	ACTGGG	1 cut(s)	881
BmsI	GCATC	4 cut(s)	414, 569, 586, 829
BmuI	ACTGGG	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	158
BsaHI	GRCGYC	4 cut(s)	73, 192, 225, 285
BsaI	GGTCTC	2 cut(s)	181, 510
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	887
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	3 cut(s)	429, 601, 844
BseMII	CTCAG	3 cut(s)	43, 128, 684
BseNI	ACTGG	1 cut(s)	887
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	544, 566, 684, 748
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	84, 141, 239, 665
BsiSI	CCGG	3 cut(s)	123, 219, 418
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	4 cut(s)	181, 232, 510, 741
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	419, 427
BsnI	GGCC	4 cut(s)	84, 141, 239, 665
Bso31I	GGTCTC	2 cut(s)	181, 510
Bsp1286I	GDGCHC	2 cut(s)	56, 115
Bsp143I	GATC	3 cut(s)	433, 617, 802
BspACI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
BspANI	GGCC	4 cut(s)	84, 141, 239, 665
BspCNI	CTCAG	3 cut(s)	42, 127, 685
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	53, 85, 619
BspMI	ACCTGC	2 cut(s)	341, 492
BspPI	GGATC	2 cut(s)	612, 625
BspTNI	GGTCTC	2 cut(s)	181, 510
BsrBI	CCGCTC	2 cut(s)	67, 197
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	887
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	3 cut(s)	433, 617, 802
BssNI	GRCGYC	4 cut(s)	73, 192, 225, 285
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	259, 300
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	4 cut(s)	73, 192, 225, 285
BstC8I	GCNNGC	4 cut(s)	65, 206, 220, 289
BstDEI	CTNAG	3 cut(s)	29, 114, 693
BstF5I	GGATG	3 cut(s)	429, 601, 844
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	436, 620, 805
BstMAI	GTCTC	4 cut(s)	181, 232, 510, 741
BstMBI	GATC	3 cut(s)	433, 617, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 278, 596, 671, 848
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	544, 566, 684, 748
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	84, 141, 239, 665
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	429, 601, 844
BveI	ACCTGC	2 cut(s)	341, 492
Cac8I	GCNNGC	4 cut(s)	65, 206, 220, 289
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	83, 140
CseI	GACGC	3 cut(s)	200, 214, 293
CviAII	CATG	3 cut(s)	471, 495, 810
DdeI	CTNAG	3 cut(s)	29, 114, 693
DpnI	GATC	3 cut(s)	435, 619, 804
DpnII	GATC	3 cut(s)	433, 617, 802
DraIII	CACNNNGTG	1 cut(s)	857
EaeI	YGGCCR	2 cut(s)	237, 663
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	56, 115
Eco31I	GGTCTC	2 cut(s)	181, 510
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	682
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	56, 115
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	3 cut(s)	474, 498, 813
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	470, 494, 809
FauI	CCCGC	2 cut(s)	72, 102
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	6 cut(s)	195, 223, 555, 558, 698, 737
FokI	GGATG	3 cut(s)	436, 608, 851
FriOI	GRGCYC	2 cut(s)	56, 115
Fsp4HI	GCNGC	6 cut(s)	195, 223, 555, 558, 698, 737
FspBI	CTAG	5 cut(s)	303, 347, 449, 671, 848
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	6 cut(s)	195, 223, 555, 558, 698, 737
HaeIII	GGCC	4 cut(s)	84, 141, 239, 665
HapII	CCGG	3 cut(s)	123, 219, 418
HgaI	GACGC	3 cut(s)	200, 214, 293
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	4 cut(s)	73, 192, 225, 285
Hin1II	CATG	3 cut(s)	474, 498, 813
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	397, 610, 789
HpaII	CCGG	3 cut(s)	123, 219, 418
HphI	GGTGA	3 cut(s)	406, 584, 785
Hpy166II	GTNNAC	2 cut(s)	296, 318
Hpy188III	TCNNGA	2 cut(s)	303, 645
Hpy8I	GTNNAC	2 cut(s)	296, 318
Hpy99I	CGWCG	4 cut(s)	75, 78, 191, 194
HpyAV	CCTTC	2 cut(s)	32, 720
HpyCH4III	ACNGT	2 cut(s)	259, 300
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	427, 501, 554, 560, 736, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 278, 596, 671, 848
HpyF3I	CTNAG	3 cut(s)	29, 114, 693
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	4 cut(s)	73, 192, 225, 285
Hsp92II	CATG	3 cut(s)	474, 498, 813
HspAI	GCGC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	433, 617, 802
LmnI	GCTCC	4 cut(s)	51, 72, 201, 277
Lsp1109I	GCAGC	4 cut(s)	544, 566, 684, 748
LweI	GCATC	4 cut(s)	414, 569, 586, 829
MaeI	CTAG	5 cut(s)	303, 347, 449, 671, 848
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	334, 773
MalI	GATC	3 cut(s)	435, 619, 804
MbiI	CCGCTC	2 cut(s)	67, 197
MboI	GATC	3 cut(s)	433, 617, 802
MboII	GAAGA	3 cut(s)	163, 238, 555
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	56, 115
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	6 cut(s)	42, 118, 157, 756, 765, 822
MluNI	TGGCCA	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	94, 288
MnlI	CCTC	9 cut(s)	38, 131, 242, 414, 623, 632, 746, 808, 878
Mox20I	TGGCCA	1 cut(s)	665
Mph1103I	ATGCAT	1 cut(s)	429
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	1 cut(s)	821
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	123, 219, 418
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	419, 427
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	5 cut(s)	60, 278, 596, 671, 848
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	3 cut(s)	433, 617, 802
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	474, 498, 813
NlaIV	GGNNCC	3 cut(s)	53, 85, 619
NmuCI	GTSAC	2 cut(s)	334, 773
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	498
PciI	ACATGT	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 222
PctI	GAATGC	2 cut(s)	419, 427
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	397, 610, 789
PkrI	GCNGC	6 cut(s)	196, 224, 556, 559, 699, 738
PscI	ACATGT	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	53, 85, 619
PspPI	GGNCC	2 cut(s)	83, 140
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	6 cut(s)	195, 223, 555, 558, 698, 737
Sau3AI	GATC	3 cut(s)	433, 617, 802
Sau96I	GGNCC	2 cut(s)	83, 140
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	56, 115
SfaNI	GCATC	4 cut(s)	414, 569, 586, 829
SgrAI	CRCCGGYG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	475
Sse9I	AATT	6 cut(s)	42, 118, 157, 756, 765, 822
SsiI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
SspI	AATATT	2 cut(s)	106, 732
SspMI	CTAG	5 cut(s)	303, 347, 449, 671, 848
StyD4I	CCNGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	259, 300
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	411, 628
TasI	AATT	6 cut(s)	42, 118, 157, 756, 765, 822
TauI	GCSGC	2 cut(s)	197, 225
TfiI	GAWTC	3 cut(s)	397, 610, 789
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TseFI	GTSAC	2 cut(s)	334, 773
TseI	GCWGC	4 cut(s)	554, 557, 697, 736
Tsp45I	GTSAC	2 cut(s)	334, 773
TspDTI	ATGAA	2 cut(s)	653, 807
TspGWI	ACGGA	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	821
XapI	RAATTY	2 cut(s)	118, 157
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	498
XspI	CTAG	5 cut(s)	303, 347, 449, 671, 848
ZraI	GACGTC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.