Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8283785.1

Orthogroup ID

OG0007215

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 344

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8283785.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

atggaagcgggaacgagtagccttctcctcagtcccactccaattcaacggagcccaaaacgcccgctccgacgtcgttttggccccactttcccgcgcttcaatattagggctcagaattccggtagtgattacagaggcccgaagccgaagacgaatttggtcgccgattgggtctctaacaacgacgacgccgctcggagcttgccgatttacgccggcggcgtctccctcttggccgttctcttcaaccgcaccgtttccgacatcgctcccgttgctgacgccagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB2_CCB4

Protein Analysis

97

Amino Acids

10.51

Weight (kDa)

10.83

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59840 AT1G59840 AT1G59840
fragaria_vesca	FvH4_4g35320
malus_domestica	MD13G1084200.v1.1
prunus_persica	Prupe.1G262600_v2.0.a1 Prupe.1G262600_v2.0.a1
pyrus_communis	pycom13g07270
rosa_chinensis	RchiOBHm_Chr4g0444951
rosa_laevigata	RLG00000005784
rosa_multiflora	Rmu_co8283785.1_g000001 Rmu_sc0011561.1_g000003 Rmu_sc0026817.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074040 Rroxscaffold_5G00385440
rosa_rugosa	Rorug04G0356500 Rorug04G0356500 Rorug04G0356600 Rorug04G0356700
rosa_samantha	Rh4AG418200 Rh4BG429900 Rh4CG444600 Rh4DG239800 Rh4DG425800
rosa_wichuraiana	Rw4G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	76
AccBSI	CCGCTC	2 cut(s)	67, 197
AccII	CGCG	1 cut(s)	97
AciI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	118, 157
AcyI	GRCGYC	4 cut(s)	73, 192, 225, 285
AgsI	TTSAA	3 cut(s)	47, 103, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	181, 232
AoxI	GGCC	3 cut(s)	82, 139, 237
ApoI	RAATTY	2 cut(s)	118, 157
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	83, 140
BanII	GRGCYC	2 cut(s)	56, 115
BbsI	GAAGAC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	181, 232
BisI	GCNGC	2 cut(s)	195, 223
BlsI	GCNGC	2 cut(s)	196, 224
BmgT120I	GGNCC	2 cut(s)	83, 140
BmiI	GGNNCC	2 cut(s)	53, 85
BpiI	GAAGAC	1 cut(s)	158
BsaHI	GRCGYC	4 cut(s)	73, 192, 225, 285
BsaI	GGTCTC	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	43, 128
BseRI	GAGGAG	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	84, 141, 239
BsiSI	CCGG	2 cut(s)	123, 219
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	181, 232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	84, 141, 239
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	56, 115
BspACI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
BspANI	GGCC	3 cut(s)	84, 141, 239
BspCNI	CTCAG	2 cut(s)	42, 127
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	53, 85
BspTNI	GGTCTC	1 cut(s)	181
BsrBI	CCGCTC	2 cut(s)	67, 197
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssNI	GRCGYC	4 cut(s)	73, 192, 225, 285
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	4 cut(s)	73, 192, 225, 285
BstC8I	GCNNGC	4 cut(s)	65, 206, 220, 289
BstDEI	CTNAG	2 cut(s)	29, 114
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	181, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 278
BstUI	CGCG	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	84, 141, 239
BtgZI	GCGATG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	65, 206, 220, 289
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	83, 140
CseI	GACGC	2 cut(s)	200, 214
CviJI	RGCY	8 cut(s)	21, 54, 84, 113, 141, 148, 204, 239
CviKI_1	RGCY	8 cut(s)	21, 54, 84, 113, 141, 148, 204, 239
DdeI	CTNAG	2 cut(s)	29, 114
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	56, 115
Eco31I	GGTCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	56, 115
Esp3I	CGTCTC	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	18
FauI	CCCGC	2 cut(s)	72, 102
Fnu4HI	GCNGC	2 cut(s)	195, 223
FriOI	GRGCYC	2 cut(s)	56, 115
Fsp4HI	GCNGC	2 cut(s)	195, 223
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	195, 223
HaeIII	GGCC	3 cut(s)	84, 141, 239
HapII	CCGG	2 cut(s)	123, 219
HgaI	GACGC	2 cut(s)	200, 214
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	4 cut(s)	73, 192, 225, 285
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	123, 219
Hpy188I	TCNGA	4 cut(s)	71, 117, 201, 265
Hpy99I	CGWCG	4 cut(s)	75, 78, 191, 194
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 278
HpyF3I	CTNAG	2 cut(s)	29, 114
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	4 cut(s)	73, 192, 225, 285
HspAI	GCGC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LmnI	GCTCC	4 cut(s)	51, 72, 201, 277
LpnPI	CCDG	2 cut(s)	136, 232
MaeII	ACGT	1 cut(s)	73
MbiI	CCGCTC	2 cut(s)	67, 197
MboII	GAAGA	2 cut(s)	163, 238
MhlI	GDGCHC	2 cut(s)	56, 115
MluCI	AATT	3 cut(s)	42, 118, 157
MmeI	TCCRAC	2 cut(s)	94, 288
MnlI	CCTC	3 cut(s)	38, 131, 242
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MspI	CCGG	2 cut(s)	123, 219
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	60, 278
NaeI	GCCGGC	1 cut(s)	220
NgoMIV	GCCGGC	1 cut(s)	218
NlaIV	GGNNCC	2 cut(s)	53, 85
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 222
PdiI	GCCGGC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	196, 224
PspN4I	GGNNCC	2 cut(s)	53, 85
PspPI	GGNCC	2 cut(s)	83, 140
SatI	GCNGC	2 cut(s)	195, 223
Sau96I	GGNCC	2 cut(s)	83, 140
SduI	GDGCHC	2 cut(s)	56, 115
SetI	ASST	2 cut(s)	76, 206
SgrAI	CRCCGGYG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	42, 118, 157
SsiI	CCGC	6 cut(s)	8, 65, 95, 195, 222, 253
SspI	AATATT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	76
TasI	AATT	3 cut(s)	42, 118, 157
TauI	GCSGC	2 cut(s)	197, 225
TspGWI	ACGGA	1 cut(s)	64
XapI	RAATTY	2 cut(s)	118, 157
ZraI	GACGTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.