AT1G59840

Cofactor assembly of complex C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007215
Physical Location & Seq
Forward (+)
22026462 .. 22029379
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59840.2

Sequence Viewer

Length: 894 bp
ATGGAAGCGAGAATCATCCTCCTCCGAATTCAAATCCCTTGGAGCGCTAATCGCCAATTCTCTCATCCTCCTTTAGATTTCCCTCGTTTTATCAGAGCTTCTTCTTCCTCAACCTCACAGAAGCCGAAAACTTACGAAGGTCCGAAACCGAGGAAGAATTTAGTAGCTGATTTCATTTCCAAAAACGATGACTTGGTTCGAAGCTTACCGATCTACGTCGGGGGCGCTTCTCTTTTGGCCGTTCTCTTTAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGATGCTAGCAGCTCACAGTCTAGAGCAGATCTATTAGCGCTTGGCTTGGCTGTCACCAATCTATTGACCGGTTTAGTCTGGTTATCGATTCGACCTAAGTCAATAACACCTGTAAATCCGAAAGGTGTGGAATGCAAAGTTGTAGAATCTGATCTTCCTGCATCGATGGTTTCCGAGTTGTTATGGGCTTGGGAATCTCTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACAATGGAATTTGCCTTATTCAAATTGGGATGGTAGCTGAATCTCCAGAAGATAAGAAAACAGTCATAGTAAAGACCGATAAGTTGATGCAAGGATCGGTTTACAGAGGGGTTATGAAATCCAAAGCACAGAGTTACTTGGCTAATCTTTCTCTTTATCCTGGGAGATCAGAGCTGCCATTTCTACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCATTGGTGGAAATACGATTAGAGGATTCACGTCTTCAGACCAGGCTTGGATTTCTTCAATTGGGGAGAAGCTAGATGCGACACTGGGGAGATATTTTGTTGATTCTGATGAGATTTCCAGAGTAACAGTTTGA

Protein Analysis

297

Amino Acids

32.22

Weight (kDa)

9.31

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB2_CCB4 PF11152 69 - 278 2.1e-61 Cofactor assembly of complex C subunit B, CCB2/CCB4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 715
AccI GTMKAC 1 cut(s) 519
AciI CCGC 2 cut(s) 722, 737
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 3 cut(s) 27, 157, 528
AcuI CTGAAG 1 cut(s) 780
AfeI AGCGCT 2 cut(s) 46, 321
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 494
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 3 cut(s) 32, 542, 819
AjiI CACGTC 1 cut(s) 792
AjnI CCWGG 2 cut(s) 679, 801
AluBI AGCT 7 cut(s) 98, 167, 204, 294, 557, 694, 832
AluI AGCT 7 cut(s) 98, 167, 204, 294, 557, 694, 832
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 1 cut(s) 622
Aor51HI AGCGCT 2 cut(s) 46, 321
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 3 cut(s) 291, 694, 733
ApoI RAATTY 3 cut(s) 27, 157, 528
AsiGI ACCGGT 1 cut(s) 350
AspLEI GCGC 3 cut(s) 47, 227, 322
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 328, 736
AsuII TTCGAA 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 287
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 786
BbvI GCAGC 3 cut(s) 303, 681, 745
BccI CCATC 2 cut(s) 442, 544
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 681, 803
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 4 cut(s) 288, 303, 509, 833
BfoI RGCGCY 3 cut(s) 48, 228, 323
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 715
BglII AGATCT 1 cut(s) 310
BisI GCNGC 4 cut(s) 292, 695, 734, 737
BlsI GCNGC 4 cut(s) 293, 696, 735, 738
Bme1390I CCNGG 2 cut(s) 681, 803
Bme18I GGWCC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 792
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 681, 803
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 4 cut(s) 274, 452, 597, 826
BmtI GCTAGC 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 854
BoxI GACNNNNGTC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 199
Bsa29I ATCGAT 2 cut(s) 368, 446
BsaJI CCNNGG 3 cut(s) 38, 149, 680
BsaWI WCCGGW 2 cut(s) 263, 350
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 849
BseBI CCWGG 2 cut(s) 681, 803
BseCI ATCGAT 2 cut(s) 368, 446
BseDI CCNNGG 3 cut(s) 38, 149, 680
BseGI GGATG 3 cut(s) 15, 64, 555
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 3 cut(s) 303, 681, 745
BshFI GGCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 350
BshVI ATCGAT 2 cut(s) 368, 446
BsiSI CCGG 2 cut(s) 264, 351
BsmAI GTCTC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 210, 310, 433, 614, 686
BspACI CCGC 2 cut(s) 722, 737
BspANI GGCC 1 cut(s) 239
BspDI ATCGAT 2 cut(s) 368, 446
BspMI ACCTGC 1 cut(s) 715
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 622
BspT104I TTCGAA 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 1 cut(s) 849
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 38, 149, 680
BssMI GATC 5 cut(s) 210, 310, 433, 614, 686
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 2 cut(s) 681, 803
Bst4CI ACNGT 4 cut(s) 259, 300, 583, 889
BstAFI CTTAAG 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 15, 64, 555
BstH2I RGCGCY 3 cut(s) 48, 228, 323
BstHHI GCGC 3 cut(s) 47, 227, 322
BstKTI GATC 5 cut(s) 213, 313, 436, 617, 689
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 5 cut(s) 210, 310, 433, 614, 686
BstMWI GCNNNNNNNGC 2 cut(s) 51, 278
BstNI CCWGG 2 cut(s) 681, 803
BstNSI RCATGY 1 cut(s) 498
BstPAI GACNNNNGTC 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 679, 801
BstV1I GCAGC 3 cut(s) 303, 681, 745
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu15I ATCGAT 2 cut(s) 368, 446
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 2 cut(s) 368, 446
BtrI CACGTC 1 cut(s) 792
BtsCI GGATG 3 cut(s) 15, 64, 555
BtsIMutI CAGTG 1 cut(s) 842
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 3 cut(s) 47, 227, 322
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 140
ClaI ATCGAT 2 cut(s) 368, 446
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 1 cut(s) 495
DdeI CTNAG 1 cut(s) 378
DpnI GATC 5 cut(s) 212, 312, 435, 616, 688
DpnII GATC 5 cut(s) 210, 310, 433, 614, 686
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 140
Eco47III AGCGCT 2 cut(s) 46, 321
Eco57I CTGAAG 1 cut(s) 780
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 679, 801
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 498
FaiI YATR 4 cut(s) 466, 496, 587, 635
FatI CATG 1 cut(s) 494
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 4 cut(s) 292, 695, 734, 737
FokI GGATG 3 cut(s) 2, 51, 562
Fsp4HI GCNGC 4 cut(s) 292, 695, 734, 737
FspBI CTAG 4 cut(s) 288, 303, 509, 833
GlaI GCGC 3 cut(s) 46, 226, 321
GluI GCNGC 4 cut(s) 292, 695, 734, 737
GsuI CTGGAG 1 cut(s) 549
HaeII RGCGCY 3 cut(s) 48, 228, 323
HaeIII GGCC 1 cut(s) 239
HapII CCGG 2 cut(s) 264, 351
HhaI GCGC 3 cut(s) 47, 227, 322
Hin1II CATG 1 cut(s) 498
Hin6I GCGC 3 cut(s) 45, 225, 320
HinP1I GCGC 3 cut(s) 45, 225, 320
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 8 cut(s) 12, 370, 428, 476, 560, 753, 786, 863
HpaII CCGG 2 cut(s) 264, 351
HphI GGTGA 2 cut(s) 328, 736
Hpy166II GTNNAC 2 cut(s) 520, 622
Hpy188III TCNNGA 3 cut(s) 303, 566, 879
Hpy8I GTNNAC 2 cut(s) 520, 622
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 4 cut(s) 259, 300, 583, 889
HpyCH4IV ACGT 2 cut(s) 216, 791
HpyCH4V TGCA 5 cut(s) 417, 443, 610, 710, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 278
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 216, 791
Hsp92II CATG 1 cut(s) 498
HspAI GCGC 3 cut(s) 45, 225, 320
Kzo9I GATC 5 cut(s) 210, 310, 433, 614, 686
LmnI GCTCC 2 cut(s) 42, 277
Lsp1109I GCAGC 3 cut(s) 303, 681, 745
LweI GCATC 4 cut(s) 274, 452, 597, 826
MaeI CTAG 4 cut(s) 288, 303, 509, 833
MaeII ACGT 2 cut(s) 216, 791
MaeIII GTNAC 3 cut(s) 334, 653, 883
MalI GATC 5 cut(s) 212, 312, 435, 616, 688
MboI GATC 5 cut(s) 210, 310, 433, 614, 686
MboII GAAGA 7 cut(s) 93, 96, 166, 428, 581, 786, 807
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 310
MluCI AATT 6 cut(s) 27, 56, 157, 528, 543, 819
MnlI CCTC 9 cut(s) 29, 32, 78, 93, 118, 124, 144, 620, 776
MseI TTAA 2 cut(s) 249, 483
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 264, 351
MspR9I CCNGG 2 cut(s) 681, 803
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 681, 803
MwoI GCNNNNNNNGC 2 cut(s) 51, 278
NdeII GATC 5 cut(s) 210, 310, 433, 614, 686
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 498
NspV TTCGAA 1 cut(s) 199
PciI ACATGT 1 cut(s) 494
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 8 cut(s) 12, 370, 428, 476, 560, 753, 786, 863
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 4 cut(s) 293, 696, 735, 738
PscI ACATGT 1 cut(s) 494
PshAI GACNNNNGTC 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 679, 801
PspGI CCWGG 2 cut(s) 679, 801
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 2 cut(s) 249, 483
SatI GCNGC 4 cut(s) 292, 695, 734, 737
Sau3AI GATC 5 cut(s) 210, 310, 433, 614, 686
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 681, 803
SfaNI GCATC 4 cut(s) 274, 452, 597, 826
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 6 cut(s) 27, 56, 157, 528, 543, 819
SsiI CCGC 2 cut(s) 722, 737
SspMI CTAG 4 cut(s) 288, 303, 509, 833
StyD4I CCNGG 2 cut(s) 679, 801
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 4 cut(s) 259, 300, 583, 889
TaiI ACGT 2 cut(s) 219, 794
TaqI TCGA 4 cut(s) 199, 368, 373, 446
TaqII GACCGA 1 cut(s) 611
TasI AATT 6 cut(s) 27, 56, 157, 528, 543, 819
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 8 cut(s) 12, 370, 428, 476, 560, 753, 786, 863
Tru1I TTAA 2 cut(s) 249, 483
Tru9I TTAA 2 cut(s) 249, 483
TscAI CASTG 1 cut(s) 849
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 291, 694, 733
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 163, 650
TspRI CASTG 1 cut(s) 849
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 3 cut(s) 27, 157, 528
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 4 cut(s) 288, 303, 509, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.